Wall clock time and date at job start Tue Mar 31 2020 12:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 H 1.09007 * 109.47227 * 175.22150 * 3 2 1 5 5 C 1.50703 * 109.46744 * 55.22460 * 3 2 1 6 6 H 1.08007 * 119.99794 * 245.71939 * 5 3 2 7 7 C 1.37880 * 120.00209 * 65.72300 * 5 3 2 8 8 N 1.31516 * 119.99777 * 5.51496 * 7 5 3 9 9 Si 1.86794 * 120.00161 * 185.51323 * 7 5 3 10 10 H 1.48493 * 109.47372 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47377 * 300.00240 * 9 7 5 12 12 H 1.48503 * 109.46988 * 59.99778 * 9 7 5 13 13 N 1.46897 * 109.47355 * 295.22635 * 3 2 1 14 14 C 1.46906 * 110.99751 * 279.79500 * 13 3 2 15 15 C 1.50702 * 109.46933 * 184.98626 * 14 13 3 16 16 C 1.38288 * 119.96860 * 269.72687 * 15 14 13 17 17 C 1.38244 * 120.11077 * 179.73207 * 16 15 14 18 18 C 1.38163 * 120.05481 * 0.54009 * 17 16 15 19 19 C 1.38711 * 119.94249 * 359.72872 * 18 17 16 20 20 O 1.35904 * 120.05237 * 179.97438 * 19 18 17 21 21 C 1.42901 * 117.00067 * 0.02562 * 20 19 18 22 22 C 1.53004 * 109.47023 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.47183 * 59.99730 * 22 21 20 24 24 F 1.39897 * 109.47330 * 180.02562 * 22 21 20 25 25 F 1.39905 * 109.46790 * 300.00342 * 22 21 20 26 26 C 1.38120 * 119.97780 * 90.00000 * 15 14 13 27 27 H 1.08994 * 109.47238 * 304.94402 * 1 2 3 28 28 H 1.09005 * 109.47252 * 64.94677 * 1 2 3 29 29 H 1.09006 * 109.46849 * 184.94575 * 1 2 3 30 30 H 1.09004 * 109.47300 * 240.00405 * 2 1 3 31 31 H 1.08999 * 109.47335 * 120.00150 * 2 1 3 32 32 H 0.96996 * 120.00132 * 355.15656 * 8 7 5 33 33 H 1.00896 * 111.00277 * 155.84291 * 13 3 2 34 34 H 1.08998 * 109.46881 * 304.97873 * 14 13 3 35 35 H 1.08994 * 109.46987 * 64.98401 * 14 13 3 36 36 H 1.07997 * 119.94484 * 359.97378 * 16 15 14 37 37 H 1.08001 * 119.97587 * 180.25478 * 17 16 15 38 38 H 1.07998 * 120.02909 * 179.75880 * 18 17 16 39 39 H 1.09000 * 109.47021 * 299.99839 * 21 20 19 40 40 H 1.08991 * 109.47033 * 60.00465 * 21 20 19 41 41 H 1.08005 * 120.02517 * 359.97150 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1266 1.4438 0.0856 5 6 1.4433 2.1862 1.1671 6 1 0.7589 3.0036 0.9937 7 6 1.7710 1.8231 2.4562 8 7 2.6852 0.9016 2.6676 9 14 0.9164 2.6399 3.9025 10 1 1.4444 2.0777 5.1714 11 1 1.1708 4.1026 3.8661 12 1 -0.5450 2.3896 3.8197 13 7 1.6466 2.1010 -1.2529 14 6 2.5539 1.7331 -2.3482 15 6 2.1951 2.5190 -3.5830 16 6 1.2801 2.0082 -4.4853 17 6 0.9447 2.7292 -5.6162 18 6 1.5316 3.9573 -5.8532 19 6 2.4538 4.4693 -4.9524 20 8 3.0329 5.6768 -5.1836 21 6 2.6448 6.3652 -6.3743 22 6 3.3962 7.6950 -6.4625 23 9 4.7735 7.4513 -6.4926 24 9 3.0158 8.3692 -7.6278 25 9 3.0860 8.4808 -5.3473 26 6 2.7846 3.7462 -3.8154 27 1 -0.3633 0.5886 0.8423 28 1 -0.3634 0.4352 -0.9310 29 1 -0.3633 -1.0239 0.0886 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.0784 0.4276 1.9182 33 1 1.6062 3.1025 -1.1378 34 1 3.5808 1.9577 -2.0603 35 1 2.4594 0.6672 -2.5557 36 1 0.8238 1.0462 -4.3043 37 1 0.2267 2.3300 -6.3173 38 1 1.2722 4.5184 -6.7388 39 1 2.8869 5.7531 -7.2431 40 1 1.5717 6.5547 -6.3509 41 1 3.5022 4.1429 -3.1124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184089255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:25 Heat of formation + Delta-G solvation = -174.696879 kcal Electronic energy + Delta-G solvation = -26037.296247 eV Core-core repulsion = 21695.111266 eV Total energy + Delta-G solvation = -4342.184980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.51771 -48.08266 -47.95319 -40.43932 -38.13753 -36.39099 -33.32326 -31.53365 -31.20478 -29.96379 -29.30070 -26.38071 -24.49642 -23.68595 -23.42038 -22.63888 -21.14224 -19.32654 -19.05514 -19.04351 -18.21126 -17.80712 -16.88893 -16.22314 -16.08248 -15.79667 -14.91901 -14.79504 -14.53026 -14.42302 -14.32999 -14.24919 -14.12998 -14.12774 -13.73968 -13.55719 -13.46080 -12.97745 -12.82046 -12.27188 -12.07472 -11.97700 -11.84679 -11.38130 -11.32269 -11.12930 -10.87128 -10.77224 -10.15984 -10.09357 -9.91250 -9.74742 -8.94527 -8.52722 -8.36604 -8.30359 -7.42816 -6.35238 -4.07525 1.24667 1.36677 1.85933 2.69531 3.27681 3.43659 3.45323 3.49319 3.63626 3.69815 3.93092 4.36437 4.45898 4.51090 4.69602 4.71270 5.04777 5.19973 5.32242 5.36671 5.39370 5.55055 5.78806 5.98333 6.09008 6.13954 6.30127 6.35783 6.38996 6.56058 6.58660 6.72764 6.92645 7.02866 7.09313 7.23403 7.41538 7.55485 7.83826 8.07047 8.47460 8.55708 8.86353 9.63212 11.01388 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002698 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.068912 B =10374.940031 C =11478.189994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.203 3.797 4 H -0.008 1.008 5 C -0.591 4.591 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.671 5.671 14 C 0.092 3.908 15 C -0.027 4.027 16 C -0.128 4.128 17 C -0.082 4.082 18 C -0.214 4.214 19 C 0.120 3.880 20 O -0.302 6.302 21 C 0.016 3.984 22 C 0.465 3.535 23 F -0.173 7.173 24 F -0.174 7.174 25 F -0.172 7.172 26 C -0.137 4.137 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.017 0.983 30 H 0.020 0.980 31 H 0.058 0.942 32 H 0.271 0.729 33 H 0.336 0.664 34 H 0.032 0.968 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 8.489 -21.547 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.010 0.990 5 C -0.630 4.630 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.549 5.549 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.303 5.303 14 C -0.037 4.037 15 C -0.028 4.028 16 C -0.147 4.147 17 C -0.100 4.100 18 C -0.233 4.233 19 C 0.076 3.924 20 O -0.216 6.216 21 C -0.062 4.062 22 C 0.410 3.590 23 F -0.155 7.155 24 F -0.155 7.155 25 F -0.153 7.153 26 C -0.156 4.156 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.153 0.847 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.235 8.201 -19.905 21.564 hybrid contribution 0.775 0.656 -1.745 2.019 sum -0.461 8.857 -21.651 23.397 Atomic orbital electron populations 1.21454 0.96385 0.97858 1.02061 1.21529 0.96488 0.98247 0.98360 1.19302 0.93211 0.91698 0.86246 0.99024 1.21910 1.30636 1.18742 0.91685 0.92758 1.25707 0.95496 0.96911 1.00074 1.70801 1.24192 1.24113 1.35755 0.83577 0.75711 0.75497 0.75750 1.20884 1.21548 1.21348 1.60694 1.50045 1.13621 1.05892 1.20991 0.94924 0.98638 0.89192 1.19870 0.94118 0.93135 0.95636 1.21049 0.98415 1.01015 0.94204 1.20903 0.98342 0.93622 0.97182 1.21102 1.01936 0.99325 1.00932 1.18795 0.94043 0.84071 0.95446 1.86038 1.64455 1.31224 1.39865 1.23738 1.00843 0.90498 0.91099 1.20021 0.78277 0.86690 0.73974 1.93240 1.31917 1.94275 1.96046 1.93222 1.91147 1.81866 1.49276 1.93252 1.92610 1.76792 1.52679 1.20360 1.03739 0.94915 0.96584 0.91777 0.93601 0.96423 0.96109 0.92363 0.91722 0.84659 0.95026 0.90598 0.85465 0.85713 0.85874 0.87467 0.87367 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.53 37.16 0.35 -2.25 16 2 C -0.11 -2.47 5.47 -26.73 -0.15 -2.61 16 3 C 0.20 4.90 1.92 -68.86 -0.13 4.76 16 4 H -0.01 -0.20 7.31 -51.93 -0.38 -0.58 16 5 C -0.59 -15.82 6.92 -34.44 -0.24 -16.06 16 6 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 7 C 0.02 0.63 5.28 -17.82 -0.09 0.53 16 8 N -0.91 -26.69 13.20 55.43 0.73 -25.96 16 9 Si 1.07 24.77 29.91 -169.99 -5.08 19.68 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 13 N -0.67 -13.68 5.85 -109.22 -0.64 -14.31 16 14 C 0.09 1.57 5.63 -4.97 -0.03 1.54 16 15 C -0.03 -0.40 5.34 -104.65 -0.56 -0.95 16 16 C -0.13 -1.66 9.70 -39.56 -0.38 -2.05 16 17 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 18 C -0.21 -2.23 9.04 -39.43 -0.36 -2.59 16 19 C 0.12 1.49 6.69 -39.22 -0.26 1.23 16 20 O -0.30 -3.51 10.02 -19.44 -0.19 -3.71 16 21 C 0.02 0.12 4.70 37.16 0.17 0.29 16 22 C 0.46 4.07 3.32 37.16 0.12 4.19 16 23 F -0.17 -1.78 17.26 2.25 0.04 -1.74 16 24 F -0.17 -1.39 17.32 2.25 0.04 -1.35 16 25 F -0.17 -1.83 17.26 2.25 0.04 -1.79 16 26 C -0.14 -1.94 9.64 -39.44 -0.38 -2.32 16 27 H 0.06 1.53 6.89 -51.93 -0.36 1.17 16 28 H 0.04 0.94 7.89 -51.93 -0.41 0.53 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 31 H 0.06 1.46 6.18 -51.93 -0.32 1.14 16 32 H 0.27 7.87 5.62 -40.82 -0.23 7.64 16 33 H 0.34 6.97 8.30 -39.29 -0.33 6.64 16 34 H 0.03 0.56 7.89 -51.93 -0.41 0.15 16 35 H 0.08 1.27 7.14 -51.93 -0.37 0.90 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.12 0.89 6.30 -52.49 -0.33 0.56 16 39 H 0.11 0.57 7.66 -51.93 -0.40 0.17 16 40 H 0.11 0.61 7.66 -51.93 -0.40 0.22 16 41 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 351.41 15.07 5.30 5.30 Total: -1.00 -29.71 351.41 -7.29 -37.00 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.19 Total: 4.46 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.33 Total: -17.57 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.09 Total: -40.27 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.19 Total: -3.71 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.12 Total: -4.88 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.71 -7.29 -37.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184089255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.694 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds