Wall clock time and date at job start Tue Mar 31 2020 12:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 H 1.09007 * 109.47227 * 175.22150 * 3 2 1 5 5 C 1.50703 * 109.46744 * 55.22460 * 3 2 1 6 6 H 1.08007 * 119.99794 * 245.71939 * 5 3 2 7 7 C 1.37880 * 120.00209 * 65.72300 * 5 3 2 8 8 N 1.31516 * 119.99777 * 5.51496 * 7 5 3 9 9 Si 1.86794 * 120.00161 * 185.51323 * 7 5 3 10 10 H 1.48493 * 109.47372 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47377 * 300.00240 * 9 7 5 12 12 H 1.48503 * 109.46988 * 59.99778 * 9 7 5 13 13 N 1.46897 * 109.47355 * 295.22635 * 3 2 1 14 14 C 1.46906 * 110.99751 * 279.79500 * 13 3 2 15 15 C 1.50702 * 109.46933 * 184.98626 * 14 13 3 16 16 C 1.38288 * 119.96860 * 269.72687 * 15 14 13 17 17 C 1.38244 * 120.11077 * 179.73207 * 16 15 14 18 18 C 1.38163 * 120.05481 * 0.54009 * 17 16 15 19 19 C 1.38711 * 119.94249 * 359.72872 * 18 17 16 20 20 O 1.35904 * 120.05237 * 179.97438 * 19 18 17 21 21 C 1.42901 * 117.00067 * 0.02562 * 20 19 18 22 22 C 1.53004 * 109.47023 * 180.02562 * 21 20 19 23 23 F 1.39901 * 109.47183 * 59.99730 * 22 21 20 24 24 F 1.39897 * 109.47330 * 180.02562 * 22 21 20 25 25 F 1.39905 * 109.46790 * 300.00342 * 22 21 20 26 26 C 1.38120 * 119.97780 * 90.00000 * 15 14 13 27 27 H 1.08994 * 109.47238 * 304.94402 * 1 2 3 28 28 H 1.09005 * 109.47252 * 64.94677 * 1 2 3 29 29 H 1.09006 * 109.46849 * 184.94575 * 1 2 3 30 30 H 1.09004 * 109.47300 * 240.00405 * 2 1 3 31 31 H 1.08999 * 109.47335 * 120.00150 * 2 1 3 32 32 H 0.96996 * 120.00132 * 355.15656 * 8 7 5 33 33 H 1.00896 * 111.00277 * 155.84291 * 13 3 2 34 34 H 1.08998 * 109.46881 * 304.97873 * 14 13 3 35 35 H 1.08994 * 109.46987 * 64.98401 * 14 13 3 36 36 H 1.07997 * 119.94484 * 359.97378 * 16 15 14 37 37 H 1.08001 * 119.97587 * 180.25478 * 17 16 15 38 38 H 1.07998 * 120.02909 * 179.75880 * 18 17 16 39 39 H 1.09000 * 109.47021 * 299.99839 * 21 20 19 40 40 H 1.08991 * 109.47033 * 60.00465 * 21 20 19 41 41 H 1.08005 * 120.02517 * 359.97150 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1266 1.4438 0.0856 5 6 1.4433 2.1862 1.1671 6 1 0.7589 3.0036 0.9937 7 6 1.7710 1.8231 2.4562 8 7 2.6852 0.9016 2.6676 9 14 0.9164 2.6399 3.9025 10 1 1.4444 2.0777 5.1714 11 1 1.1708 4.1026 3.8661 12 1 -0.5450 2.3896 3.8197 13 7 1.6466 2.1010 -1.2529 14 6 2.5539 1.7331 -2.3482 15 6 2.1951 2.5190 -3.5830 16 6 1.2801 2.0082 -4.4853 17 6 0.9447 2.7292 -5.6162 18 6 1.5316 3.9573 -5.8532 19 6 2.4538 4.4693 -4.9524 20 8 3.0329 5.6768 -5.1836 21 6 2.6448 6.3652 -6.3743 22 6 3.3962 7.6950 -6.4625 23 9 4.7735 7.4513 -6.4926 24 9 3.0158 8.3692 -7.6278 25 9 3.0860 8.4808 -5.3473 26 6 2.7846 3.7462 -3.8154 27 1 -0.3633 0.5886 0.8423 28 1 -0.3634 0.4352 -0.9310 29 1 -0.3633 -1.0239 0.0886 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.0784 0.4276 1.9182 33 1 1.6062 3.1025 -1.1378 34 1 3.5808 1.9577 -2.0603 35 1 2.4594 0.6672 -2.5557 36 1 0.8238 1.0462 -4.3043 37 1 0.2267 2.3300 -6.3173 38 1 1.2722 4.5184 -6.7388 39 1 2.8869 5.7531 -7.2431 40 1 1.5717 6.5547 -6.3509 41 1 3.5022 4.1429 -3.1124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184089255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:24 Heat of formation + Delta-G solvation = -191.743979 kcal Electronic energy + Delta-G solvation = -26038.035464 eV Core-core repulsion = 21695.111266 eV Total energy + Delta-G solvation = -4342.924198 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.22490 -48.76637 -48.71486 -41.32093 -39.22685 -38.02164 -34.95138 -33.01034 -32.26474 -31.36122 -30.13657 -28.06039 -25.96089 -25.30137 -24.57608 -23.56881 -22.16813 -21.16536 -19.87460 -19.75659 -19.09483 -18.93293 -18.41569 -17.01635 -16.94591 -16.82042 -16.19261 -15.84619 -15.75983 -15.60650 -15.53836 -15.46887 -15.14540 -14.97456 -14.87796 -14.86032 -14.41595 -14.32841 -13.96690 -13.63515 -13.51537 -13.32717 -13.08981 -12.84360 -12.60241 -12.46502 -12.21598 -11.97975 -11.95513 -11.95203 -11.69222 -11.54753 -10.60294 -10.40157 -9.90437 -9.27898 -9.15465 -8.55300 -6.27811 0.28792 0.42814 1.17154 1.54736 1.61648 1.80411 1.97769 2.57616 2.63112 2.72002 2.87231 3.23498 3.24441 3.62250 3.75571 3.83000 3.92619 3.94070 4.10423 4.25490 4.38763 4.40296 4.46555 4.55611 4.64701 4.74365 4.77102 5.01608 5.04291 5.20713 5.21378 5.38791 5.43998 5.51016 5.64445 5.70270 5.72737 5.89419 6.09858 6.21980 6.48138 6.60281 6.78174 7.51101 8.81756 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002698 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.068912 B =10374.940031 C =11478.189994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.102 4.102 3 C 0.207 3.793 4 H -0.043 1.043 5 C -0.595 4.595 6 H 0.049 0.951 7 C -0.025 4.025 8 N -0.939 5.939 9 Si 1.109 2.891 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.270 1.270 13 N -0.664 5.664 14 C 0.097 3.903 15 C -0.044 4.044 16 C -0.138 4.138 17 C -0.074 4.074 18 C -0.201 4.201 19 C 0.118 3.882 20 O -0.324 6.324 21 C 0.011 3.989 22 C 0.464 3.536 23 F -0.186 7.186 24 F -0.167 7.167 25 F -0.187 7.187 26 C -0.160 4.160 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.260 0.740 33 H 0.331 0.669 34 H 0.017 0.983 35 H 0.079 0.921 36 H 0.131 0.869 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 9.048 -24.141 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.141 4.141 3 C 0.098 3.902 4 H -0.026 1.026 5 C -0.633 4.633 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.577 5.577 9 Si 0.932 3.068 10 H -0.213 1.213 11 H -0.200 1.200 12 H -0.196 1.196 13 N -0.294 5.294 14 C -0.031 4.031 15 C -0.045 4.045 16 C -0.157 4.157 17 C -0.092 4.092 18 C -0.219 4.219 19 C 0.074 3.926 20 O -0.238 6.238 21 C -0.065 4.065 22 C 0.410 3.590 23 F -0.167 7.167 24 F -0.149 7.149 25 F -0.168 7.168 26 C -0.179 4.179 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.148 0.852 34 H 0.035 0.965 35 H 0.097 0.903 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.277 8.770 -22.537 24.404 hybrid contribution 1.447 0.561 -1.098 1.901 sum -1.830 9.331 -23.635 25.476 Atomic orbital electron populations 1.21331 0.94941 0.98962 1.01450 1.21419 0.97620 0.97097 0.97974 1.19137 0.90921 0.92735 0.87417 1.02573 1.22187 1.29934 1.18444 0.92736 0.93253 1.27000 0.95420 0.96884 1.03050 1.70905 1.25830 1.25577 1.35353 0.83026 0.75642 0.75395 0.72773 1.21311 1.20026 1.19558 1.60638 1.50746 1.12998 1.05036 1.20923 0.93501 0.99302 0.89416 1.19580 0.96097 0.93527 0.95291 1.21190 0.98097 1.01596 0.94818 1.21299 0.98103 0.93255 0.96516 1.21546 0.99981 0.99129 1.01282 1.18801 0.94351 0.84259 0.95157 1.85989 1.64888 1.31070 1.41888 1.24083 1.02092 0.89699 0.90660 1.20243 0.77861 0.87207 0.73670 1.93217 1.33081 1.94345 1.96082 1.93234 1.90997 1.81853 1.48770 1.93224 1.92656 1.77360 1.53600 1.20303 1.04344 0.95515 0.97780 0.94270 0.92502 0.94100 0.94181 0.94984 0.92900 0.85185 0.96522 0.90301 0.85061 0.82176 0.81779 0.84393 0.84696 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.66 9.53 71.98 0.69 -3.97 16 2 C -0.10 -4.76 5.47 30.59 0.17 -4.59 16 3 C 0.21 10.29 1.92 44.17 0.08 10.37 16 4 H -0.04 -2.41 7.31 -2.38 -0.02 -2.43 16 5 C -0.59 -32.54 6.92 25.60 0.18 -32.37 16 6 H 0.05 2.70 7.75 -2.91 -0.02 2.68 16 7 C -0.02 -1.39 5.28 84.65 0.45 -0.95 16 8 N -0.94 -56.61 13.20 21.45 0.28 -56.33 16 9 Si 1.11 50.13 29.91 68.60 2.05 52.18 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 N -0.66 -27.66 5.85 -499.45 -2.92 -30.58 16 14 C 0.10 3.43 5.63 85.56 0.48 3.91 16 15 C -0.04 -1.30 5.34 -19.88 -0.11 -1.40 16 16 C -0.14 -3.31 9.70 22.28 0.22 -3.09 16 17 C -0.07 -1.30 10.04 22.25 0.22 -1.08 16 18 C -0.20 -3.34 9.04 22.37 0.20 -3.13 16 19 C 0.12 2.72 6.69 22.50 0.15 2.87 16 20 O -0.32 -6.98 10.02 -92.47 -0.93 -7.91 16 21 C 0.01 0.13 4.70 71.98 0.34 0.47 16 22 C 0.46 7.30 3.32 71.98 0.24 7.54 16 23 F -0.19 -3.64 17.26 44.97 0.78 -2.86 16 24 F -0.17 -2.29 17.32 44.97 0.78 -1.51 16 25 F -0.19 -3.82 17.26 44.97 0.78 -3.04 16 26 C -0.16 -4.59 9.64 22.36 0.22 -4.37 16 27 H 0.04 1.84 6.89 -2.39 -0.02 1.82 16 28 H 0.06 2.26 7.89 -2.38 -0.02 2.24 16 29 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.04 1.67 7.13 -2.38 -0.02 1.66 16 31 H 0.03 1.65 6.18 -2.39 -0.01 1.63 16 32 H 0.26 15.83 5.62 -92.71 -0.52 15.30 16 33 H 0.33 14.18 8.30 -89.70 -0.74 13.44 16 34 H 0.02 0.63 7.89 -2.39 -0.02 0.61 16 35 H 0.08 2.68 7.14 -2.39 -0.02 2.66 16 36 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.16 1.34 6.30 -2.91 -0.02 1.32 16 39 H 0.14 0.83 7.66 -2.39 -0.02 0.81 16 40 H 0.14 0.92 7.66 -2.39 -0.02 0.90 16 41 H 0.11 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -66.62 351.41 4.91 -61.71 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.57 Total: 18.14 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 3.52 Total: -29.80 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.64 Total: -86.91 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.93 Total: -7.91 kcal Atomic # 9 Polarization: -9.75 SS G_CDS: 2.33 Total: -7.42 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Total: -66.62 4.91 -61.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184089255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.032 kcal (2) G-P(sol) polarization free energy of solvation -66.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds