Wall clock time and date at job start Tue Mar 31 2020 12:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47223 * 2 1 4 4 H 1.08999 * 109.47300 * 54.72402 * 3 2 1 5 5 C 1.50703 * 109.47103 * 174.72792 * 3 2 1 6 6 H 1.08004 * 119.99526 * 120.14201 * 5 3 2 7 7 C 1.37874 * 119.99966 * 300.13903 * 5 3 2 8 8 N 1.31512 * 119.99812 * 166.71074 * 7 5 3 9 9 Si 1.86801 * 119.99965 * 346.71135 * 7 5 3 10 10 H 1.48502 * 109.46974 * 264.64882 * 9 7 5 11 11 H 1.48496 * 109.47187 * 24.65538 * 9 7 5 12 12 H 1.48500 * 109.47156 * 144.65190 * 9 7 5 13 13 N 1.46901 * 109.47095 * 294.72906 * 3 2 1 14 14 C 1.46893 * 111.00349 * 101.50415 * 13 3 2 15 15 C 1.50701 * 109.47290 * 182.99301 * 14 13 3 16 16 C 1.38268 * 119.94480 * 269.72664 * 15 14 13 17 17 C 1.38144 * 120.05182 * 179.72489 * 16 15 14 18 18 C 1.38731 * 119.94501 * 0.56865 * 17 16 15 19 19 O 1.35901 * 120.05705 * 179.67926 * 18 17 16 20 20 C 1.42902 * 116.99871 * 0.02581 * 19 18 17 21 21 C 1.52995 * 109.47360 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.46873 * 60.00286 * 21 20 19 23 23 F 1.39900 * 109.47135 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.47358 * 300.00108 * 21 20 19 25 25 C 1.38726 * 119.89083 * 359.70873 * 18 17 16 26 26 C 1.38148 * 119.94563 * 359.97438 * 25 18 17 27 27 H 1.08998 * 109.47228 * 186.79544 * 1 2 3 28 28 H 1.09005 * 109.46657 * 306.79383 * 1 2 3 29 29 H 1.08999 * 109.47146 * 66.79499 * 1 2 3 30 30 H 1.09001 * 109.47073 * 239.99515 * 2 1 3 31 31 H 1.09000 * 109.46919 * 119.99779 * 2 1 3 32 32 H 0.97008 * 119.99911 * 180.02562 * 8 7 5 33 33 H 1.00905 * 110.99752 * 337.55043 * 13 3 2 34 34 H 1.09001 * 109.47145 * 302.99242 * 14 13 3 35 35 H 1.09000 * 109.46885 * 62.99415 * 14 13 3 36 36 H 1.07996 * 119.97114 * 359.97438 * 16 15 14 37 37 H 1.08002 * 120.02709 * 180.25101 * 17 16 15 38 38 H 1.09002 * 109.47254 * 300.00093 * 20 19 18 39 39 H 1.09002 * 109.47053 * 59.99882 * 20 19 18 40 40 H 1.08001 * 120.03347 * 179.97438 * 25 18 17 41 41 H 1.07995 * 119.97573 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 0.8389 5 6 3.5414 1.4444 0.1306 6 1 4.1500 1.8898 -0.6425 7 6 4.1379 0.8777 1.2369 8 7 5.4317 0.6418 1.2379 9 14 3.1084 0.4450 2.7343 10 1 3.1735 1.5559 3.7176 11 1 1.6982 0.2319 2.3206 12 1 3.6351 -0.7970 3.3550 13 7 1.6570 2.0973 -1.2580 14 6 0.4909 2.9692 -1.0639 15 6 0.0832 3.5647 -2.3869 16 6 0.6208 4.7713 -2.7956 17 6 0.2529 5.3164 -4.0104 18 6 -0.6656 4.6581 -4.8152 19 8 -1.0340 5.1956 -6.0078 20 6 -0.4352 6.4414 -6.3706 21 6 -0.9679 6.8852 -7.7344 22 9 -2.3568 7.0380 -7.6654 23 9 -0.3821 8.1051 -8.0893 24 9 -0.6522 5.9188 -8.6954 25 6 -1.2078 3.4505 -4.4002 26 6 -0.8318 2.9062 -3.1875 27 1 -0.3633 -1.0204 0.1216 28 1 -0.3633 0.6156 0.8230 29 1 -0.3633 0.4049 -0.9445 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8513 0.2428 2.0161 33 1 1.4827 1.4161 -1.9817 34 1 -0.3355 2.3858 -0.6580 35 1 0.7469 3.7689 -0.3689 36 1 1.3318 5.2859 -2.1664 37 1 0.6761 6.2569 -4.3311 38 1 -0.6808 7.1943 -5.6216 39 1 0.6469 6.3222 -6.4248 40 1 -1.9233 2.9362 -5.0247 41 1 -1.2533 1.9659 -2.8642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184093196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:28 Heat of formation + Delta-G solvation = -160.671983 kcal Electronic energy + Delta-G solvation = -25869.334311 eV Core-core repulsion = 21527.757497 eV Total energy + Delta-G solvation = -4341.576815 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.54306 -48.10104 -47.98955 -40.43459 -38.22801 -36.53903 -32.87574 -31.84553 -31.26081 -30.59118 -29.34548 -27.26602 -24.59243 -24.08642 -22.53271 -22.41812 -21.03994 -20.00881 -19.30049 -19.07609 -18.19628 -18.04448 -16.80138 -16.23132 -15.86244 -15.45644 -15.19591 -14.92054 -14.81903 -14.66246 -14.45048 -14.16450 -14.15930 -14.08021 -13.83350 -13.58800 -13.48227 -13.29943 -12.84323 -12.66320 -12.20977 -11.96349 -11.88016 -11.76868 -11.48375 -11.26028 -10.92886 -10.87689 -10.70970 -10.40560 -9.94051 -9.33043 -9.26202 -9.05398 -8.42163 -8.25221 -7.35392 -6.05756 -3.98782 1.27244 1.35602 1.84962 2.67730 3.25850 3.26424 3.34788 3.38151 3.48257 3.69868 3.91796 4.39110 4.42148 4.46408 4.73526 4.75849 4.96217 5.20421 5.21077 5.31849 5.38664 5.51959 5.71001 5.78429 5.81458 5.96804 6.01770 6.06220 6.17945 6.29975 6.44241 6.52997 6.58569 6.72017 6.73307 6.83169 7.07725 7.16179 7.74807 7.91745 8.30163 8.71636 9.11085 9.60016 11.07788 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.002305 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.548530 B =12146.944703 C =12624.656800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C 0.193 3.807 4 H 0.023 0.977 5 C -0.499 4.499 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.897 5.897 9 Si 0.856 3.144 10 H -0.284 1.284 11 H -0.247 1.247 12 H -0.288 1.288 13 N -0.665 5.665 14 C 0.093 3.907 15 C -0.096 4.096 16 C -0.057 4.057 17 C -0.205 4.205 18 C 0.112 3.888 19 O -0.304 6.304 20 C 0.015 3.985 21 C 0.465 3.535 22 F -0.174 7.174 23 F -0.173 7.173 24 F -0.173 7.173 25 C -0.142 4.142 26 C -0.077 4.077 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.262 0.738 33 H 0.329 0.671 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.129 0.871 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.590 11.165 -14.255 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C 0.084 3.916 4 H 0.041 0.959 5 C -0.537 4.537 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.535 5.535 9 Si 0.684 3.316 10 H -0.210 1.210 11 H -0.171 1.171 12 H -0.214 1.214 13 N -0.296 5.296 14 C -0.036 4.036 15 C -0.097 4.097 16 C -0.075 4.075 17 C -0.224 4.224 18 C 0.068 3.932 19 O -0.218 6.218 20 C -0.063 4.063 21 C 0.411 3.589 22 F -0.156 7.156 23 F -0.154 7.154 24 F -0.155 7.155 25 C -0.161 4.161 26 C -0.096 4.096 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.147 0.853 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -15.118 11.535 -14.232 23.752 hybrid contribution -0.968 -0.711 0.845 1.468 sum -16.086 10.824 -13.387 23.561 Atomic orbital electron populations 1.21947 0.98481 1.00299 1.00382 1.22749 0.92872 1.01679 1.02253 1.19580 0.96739 0.88130 0.87103 0.95926 1.21009 0.89086 1.37040 1.06581 0.90177 1.24926 0.94727 0.95095 0.98440 1.69959 1.10344 1.43482 1.29717 0.87436 0.82327 0.77988 0.83892 1.21019 1.17127 1.21447 1.60710 1.33515 1.25371 1.09955 1.21046 0.92990 0.97260 0.92334 1.20023 0.96859 0.95189 0.97625 1.20913 0.97060 0.94811 0.94731 1.21188 1.01980 1.02041 0.97197 1.18833 0.96136 0.94001 0.84203 1.85996 1.64998 1.34705 1.36145 1.23754 1.00606 0.88941 0.92953 1.20028 0.76156 0.75265 0.87475 1.93233 1.30355 1.95439 1.96564 1.93230 1.84146 1.45158 1.92878 1.93241 1.92477 1.63089 1.66647 1.20322 1.03434 0.94508 0.97841 1.20915 0.96561 0.99192 0.92898 0.93940 0.93546 0.93660 0.92318 0.91680 0.92821 0.85398 0.94877 0.90694 0.85072 0.85680 0.87363 0.87222 0.85261 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.63 37.16 0.32 -2.19 16 2 C -0.16 -3.18 4.37 -26.73 -0.12 -3.30 16 3 C 0.19 4.29 1.75 -68.86 -0.12 4.17 16 4 H 0.02 0.52 6.67 -51.93 -0.35 0.17 16 5 C -0.50 -13.71 9.35 -34.44 -0.32 -14.03 16 6 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 7 C 0.07 1.96 5.35 -17.82 -0.10 1.86 16 8 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 9 Si 0.86 20.50 25.68 -169.99 -4.37 16.14 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.25 -5.43 5.15 56.52 0.29 -5.14 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.67 -12.75 6.08 -109.22 -0.66 -13.42 16 14 C 0.09 1.45 5.20 -4.98 -0.03 1.43 16 15 C -0.10 -1.31 5.36 -104.60 -0.56 -1.87 16 16 C -0.06 -0.72 9.69 -39.60 -0.38 -1.10 16 17 C -0.21 -2.24 9.04 -39.43 -0.36 -2.59 16 18 C 0.11 1.28 6.69 -39.22 -0.26 1.01 16 19 O -0.30 -3.19 10.02 -19.43 -0.19 -3.38 16 20 C 0.01 0.11 4.70 37.16 0.17 0.28 16 21 C 0.47 3.77 3.32 37.16 0.12 3.90 16 22 F -0.17 -1.63 17.26 2.25 0.04 -1.59 16 23 F -0.17 -1.34 17.32 2.25 0.04 -1.30 16 24 F -0.17 -1.68 17.26 2.25 0.04 -1.64 16 25 C -0.14 -1.64 9.99 -39.43 -0.39 -2.03 16 26 C -0.08 -0.93 9.69 -39.60 -0.38 -1.32 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.04 0.65 6.72 -51.93 -0.35 0.31 16 30 H 0.06 1.19 8.03 -51.93 -0.42 0.77 16 31 H 0.06 1.43 4.10 -51.93 -0.21 1.21 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.33 5.98 7.94 -39.29 -0.31 5.67 16 34 H 0.03 0.49 5.98 -51.93 -0.31 0.18 16 35 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 36 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.13 1.01 6.30 -52.49 -0.33 0.68 16 38 H 0.11 0.56 7.66 -51.93 -0.40 0.16 16 39 H 0.11 0.62 7.66 -51.93 -0.40 0.22 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -30.61 345.98 -6.80 -37.41 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.27 Total: 4.70 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -2.40 Total: -15.78 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.11 Total: -39.77 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: -0.19 Total: -3.38 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.12 Total: -4.53 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.37 Total: 16.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.61 -6.80 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184093196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.262 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds