Wall clock time and date at job start Tue Mar 31 2020 12:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47223 * 2 1 4 4 H 1.08999 * 109.47300 * 54.72402 * 3 2 1 5 5 C 1.50703 * 109.47103 * 174.72792 * 3 2 1 6 6 H 1.08004 * 119.99526 * 120.14201 * 5 3 2 7 7 C 1.37874 * 119.99966 * 300.13903 * 5 3 2 8 8 N 1.31512 * 119.99812 * 166.71074 * 7 5 3 9 9 Si 1.86801 * 119.99965 * 346.71135 * 7 5 3 10 10 H 1.48502 * 109.46974 * 264.64882 * 9 7 5 11 11 H 1.48496 * 109.47187 * 24.65538 * 9 7 5 12 12 H 1.48500 * 109.47156 * 144.65190 * 9 7 5 13 13 N 1.46901 * 109.47095 * 294.72906 * 3 2 1 14 14 C 1.46893 * 111.00349 * 101.50415 * 13 3 2 15 15 C 1.50701 * 109.47290 * 182.99301 * 14 13 3 16 16 C 1.38268 * 119.94480 * 269.72664 * 15 14 13 17 17 C 1.38144 * 120.05182 * 179.72489 * 16 15 14 18 18 C 1.38731 * 119.94501 * 0.56865 * 17 16 15 19 19 O 1.35901 * 120.05705 * 179.67926 * 18 17 16 20 20 C 1.42902 * 116.99871 * 0.02581 * 19 18 17 21 21 C 1.52995 * 109.47360 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.46873 * 60.00286 * 21 20 19 23 23 F 1.39900 * 109.47135 * 179.97438 * 21 20 19 24 24 F 1.39899 * 109.47358 * 300.00108 * 21 20 19 25 25 C 1.38726 * 119.89083 * 359.70873 * 18 17 16 26 26 C 1.38148 * 119.94563 * 359.97438 * 25 18 17 27 27 H 1.08998 * 109.47228 * 186.79544 * 1 2 3 28 28 H 1.09005 * 109.46657 * 306.79383 * 1 2 3 29 29 H 1.08999 * 109.47146 * 66.79499 * 1 2 3 30 30 H 1.09001 * 109.47073 * 239.99515 * 2 1 3 31 31 H 1.09000 * 109.46919 * 119.99779 * 2 1 3 32 32 H 0.97008 * 119.99911 * 180.02562 * 8 7 5 33 33 H 1.00905 * 110.99752 * 337.55043 * 13 3 2 34 34 H 1.09001 * 109.47145 * 302.99242 * 14 13 3 35 35 H 1.09000 * 109.46885 * 62.99415 * 14 13 3 36 36 H 1.07996 * 119.97114 * 359.97438 * 16 15 14 37 37 H 1.08002 * 120.02709 * 180.25101 * 17 16 15 38 38 H 1.09002 * 109.47254 * 300.00093 * 20 19 18 39 39 H 1.09002 * 109.47053 * 59.99882 * 20 19 18 40 40 H 1.08001 * 120.03347 * 179.97438 * 25 18 17 41 41 H 1.07995 * 119.97573 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9829 0.8389 5 6 3.5414 1.4444 0.1306 6 1 4.1500 1.8898 -0.6425 7 6 4.1379 0.8777 1.2369 8 7 5.4317 0.6418 1.2379 9 14 3.1084 0.4450 2.7343 10 1 3.1735 1.5559 3.7176 11 1 1.6982 0.2319 2.3206 12 1 3.6351 -0.7970 3.3550 13 7 1.6570 2.0973 -1.2580 14 6 0.4909 2.9692 -1.0639 15 6 0.0832 3.5647 -2.3869 16 6 0.6208 4.7713 -2.7956 17 6 0.2529 5.3164 -4.0104 18 6 -0.6656 4.6581 -4.8152 19 8 -1.0340 5.1956 -6.0078 20 6 -0.4352 6.4414 -6.3706 21 6 -0.9679 6.8852 -7.7344 22 9 -2.3568 7.0380 -7.6654 23 9 -0.3821 8.1051 -8.0893 24 9 -0.6522 5.9188 -8.6954 25 6 -1.2078 3.4505 -4.4002 26 6 -0.8318 2.9062 -3.1875 27 1 -0.3633 -1.0204 0.1216 28 1 -0.3633 0.6156 0.8230 29 1 -0.3633 0.4049 -0.9445 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8513 0.2428 2.0161 33 1 1.4827 1.4161 -1.9817 34 1 -0.3355 2.3858 -0.6580 35 1 0.7469 3.7689 -0.3689 36 1 1.3318 5.2859 -2.1664 37 1 0.6761 6.2569 -4.3311 38 1 -0.6808 7.1943 -5.6216 39 1 0.6469 6.3222 -6.4248 40 1 -1.9233 2.9362 -5.0247 41 1 -1.2533 1.9659 -2.8642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184093196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:28 Heat of formation + Delta-G solvation = -180.058476 kcal Electronic energy + Delta-G solvation = -25870.174973 eV Core-core repulsion = 21527.757497 eV Total energy + Delta-G solvation = -4342.417476 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.20349 -48.74752 -48.68628 -41.26093 -39.26398 -37.94559 -34.58678 -33.39730 -32.16260 -31.48517 -30.44760 -28.89766 -25.77699 -24.98037 -23.98953 -23.35445 -22.06614 -21.69773 -20.00913 -19.73610 -18.92594 -18.83735 -18.69316 -16.97323 -16.89885 -16.88576 -16.44145 -15.88659 -15.69297 -15.56848 -15.50810 -15.12306 -14.97841 -14.86404 -14.85027 -14.83822 -14.56780 -14.33627 -14.29577 -13.75753 -13.46394 -13.31104 -13.15730 -12.83800 -12.77330 -12.59981 -12.37063 -12.14153 -12.02056 -11.77212 -11.63200 -11.26422 -11.03275 -10.52674 -9.93348 -9.20431 -8.84497 -8.23466 -6.21197 0.38565 0.43702 1.19786 1.35784 1.40652 1.48559 2.00632 2.39148 2.65280 2.75224 2.89683 3.10199 3.27810 3.73641 3.79216 3.91372 3.94068 4.00432 4.07391 4.29956 4.34905 4.41699 4.46930 4.50511 4.60109 4.76939 4.83214 4.89086 5.11960 5.13429 5.20387 5.24061 5.27281 5.38099 5.55061 5.70793 5.75197 5.79061 6.10148 6.24422 6.75400 6.84817 6.85883 7.42731 8.94166 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.028843 B = 0.002305 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.548530 B =12146.944703 C =12624.656800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.155 4.155 3 C 0.199 3.801 4 H 0.024 0.976 5 C -0.504 4.504 6 H 0.029 0.971 7 C 0.009 3.991 8 N -0.951 5.951 9 Si 0.924 3.076 10 H -0.284 1.284 11 H -0.211 1.211 12 H -0.290 1.290 13 N -0.680 5.680 14 C 0.099 3.901 15 C -0.115 4.115 16 C -0.071 4.071 17 C -0.203 4.203 18 C 0.113 3.887 19 O -0.316 6.316 20 C 0.010 3.990 21 C 0.467 3.533 22 F -0.183 7.183 23 F -0.170 7.170 24 F -0.184 7.184 25 C -0.150 4.150 26 C -0.076 4.076 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.262 0.738 33 H 0.334 0.666 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.127 0.873 37 H 0.153 0.847 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.144 0.856 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.367 11.413 -14.412 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.194 4.194 3 C 0.090 3.910 4 H 0.042 0.958 5 C -0.543 4.543 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.749 3.251 10 H -0.211 1.211 11 H -0.134 1.134 12 H -0.217 1.217 13 N -0.310 5.310 14 C -0.030 4.030 15 C -0.116 4.116 16 C -0.089 4.089 17 C -0.221 4.221 18 C 0.069 3.931 19 O -0.231 6.231 20 C -0.067 4.067 21 C 0.413 3.587 22 F -0.165 7.165 23 F -0.151 7.151 24 F -0.166 7.166 25 C -0.169 4.169 26 C -0.094 4.094 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.152 0.848 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.171 0.829 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.931 11.800 -14.419 25.859 hybrid contribution -0.051 -0.668 0.698 0.968 sum -17.982 11.132 -13.721 25.210 Atomic orbital electron populations 1.21863 0.94771 1.01961 1.01720 1.22598 0.96127 0.99441 1.01243 1.19341 0.93129 0.89958 0.88586 0.95835 1.21348 0.91999 1.35788 1.05120 0.95278 1.25820 0.95848 0.95257 1.01830 1.70126 1.12726 1.45528 1.30811 0.86340 0.82401 0.77292 0.79096 1.21061 1.13372 1.21681 1.60490 1.36228 1.25580 1.08740 1.20977 0.91898 0.96371 0.93707 1.19895 0.98423 0.96034 0.97257 1.21016 0.97331 0.94956 0.95625 1.21410 1.01537 1.02938 0.96248 1.18952 0.95754 0.93974 0.84405 1.85967 1.65396 1.36058 1.35630 1.24030 1.01491 0.88355 0.92813 1.20150 0.75751 0.75121 0.87673 1.93217 1.31163 1.95476 1.96597 1.93236 1.84026 1.44946 1.92902 1.93220 1.92522 1.63593 1.67261 1.20556 1.03672 0.94803 0.97838 1.21035 0.96003 0.99569 0.92801 0.91923 0.93057 0.91754 0.92942 0.93232 0.92880 0.84797 0.93361 0.91726 0.85479 0.82920 0.84872 0.85363 0.83856 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 8.63 71.98 0.62 -3.58 16 2 C -0.15 -6.01 4.37 30.59 0.13 -5.87 16 3 C 0.20 8.74 1.75 44.17 0.08 8.82 16 4 H 0.02 1.04 6.67 -2.39 -0.02 1.03 16 5 C -0.50 -28.57 9.35 25.60 0.24 -28.33 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 7 C 0.01 0.51 5.35 84.65 0.45 0.97 16 8 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 9 Si 0.92 42.50 25.68 68.60 1.76 44.26 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.21 -8.44 5.15 99.48 0.51 -7.93 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 N -0.68 -25.71 6.08 -499.47 -3.04 -28.75 16 14 C 0.10 2.96 5.20 85.56 0.45 3.40 16 15 C -0.12 -2.96 5.36 -19.85 -0.11 -3.07 16 16 C -0.07 -1.70 9.69 22.25 0.22 -1.49 16 17 C -0.20 -3.95 9.04 22.37 0.20 -3.75 16 18 C 0.11 2.31 6.69 22.50 0.15 2.46 16 19 O -0.32 -5.85 10.02 -92.43 -0.93 -6.78 16 20 C 0.01 0.11 4.70 71.98 0.34 0.45 16 21 C 0.47 6.74 3.32 71.98 0.24 6.97 16 22 F -0.18 -3.15 17.26 44.97 0.78 -2.38 16 23 F -0.17 -2.32 17.32 44.97 0.78 -1.54 16 24 F -0.18 -3.33 17.26 44.97 0.78 -2.56 16 25 C -0.15 -3.10 9.99 22.37 0.22 -2.88 16 26 C -0.08 -1.65 9.69 22.26 0.22 -1.44 16 27 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 1.44 8.08 -2.38 -0.02 1.42 16 29 H 0.06 1.60 6.72 -2.39 -0.02 1.59 16 30 H 0.05 2.07 8.03 -2.39 -0.02 2.05 16 31 H 0.05 2.06 4.10 -2.39 -0.01 2.05 16 32 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 33 H 0.33 11.87 7.94 -89.69 -0.71 11.16 16 34 H 0.05 1.30 5.98 -2.39 -0.01 1.28 16 35 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 36 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 37 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 38 H 0.13 0.93 7.66 -2.39 -0.02 0.91 16 39 H 0.13 1.06 7.66 -2.39 -0.02 1.04 16 40 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -68.79 345.98 4.04 -64.76 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.16 Total: 19.83 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 3.45 Total: -27.34 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -2.74 Total: -88.26 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.93 Total: -6.78 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 2.33 Total: -6.47 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.76 Total: 44.26 kcal Total: -68.79 4.04 -64.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184093196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.302 kcal (2) G-P(sol) polarization free energy of solvation -68.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds