Wall clock time and date at job start Tue Mar 31 2020 12:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47029 * 2 1 4 4 H 1.09007 * 109.47010 * 174.09112 * 3 2 1 5 5 C 1.50698 * 109.47596 * 54.08624 * 3 2 1 6 6 H 1.07996 * 120.00565 * 239.99722 * 5 3 2 7 7 C 1.37878 * 119.99766 * 60.00078 * 5 3 2 8 8 N 1.31521 * 120.00047 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00053 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46926 * 119.99947 * 9 7 5 12 12 H 1.48500 * 109.47332 * 239.99791 * 9 7 5 13 13 N 1.46904 * 109.47294 * 294.08577 * 3 2 1 14 14 C 1.46903 * 111.00121 * 275.74738 * 13 3 2 15 15 C 1.50695 * 109.47333 * 176.25629 * 14 13 3 16 16 C 1.38270 * 119.94642 * 89.99747 * 15 14 13 17 17 C 1.38138 * 120.05793 * 180.02562 * 16 15 14 18 18 C 1.38739 * 119.94585 * 359.97438 * 17 16 15 19 19 O 1.35896 * 120.05712 * 180.02562 * 18 17 16 20 20 C 1.42899 * 117.00175 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47172 * 179.97438 * 20 19 18 22 22 F 1.39906 * 109.47126 * 59.99736 * 21 20 19 23 23 F 1.39902 * 109.46923 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.47022 * 299.99461 * 21 20 19 25 25 C 1.38732 * 119.88419 * 0.27706 * 18 17 16 26 26 C 1.38143 * 119.94644 * 359.47195 * 25 18 17 27 27 H 1.08999 * 109.47494 * 178.56039 * 1 2 3 28 28 H 1.08999 * 109.46869 * 298.55882 * 1 2 3 29 29 H 1.09000 * 109.46959 * 58.55864 * 1 2 3 30 30 H 1.09002 * 109.46745 * 239.99777 * 2 1 3 31 31 H 1.09001 * 109.46530 * 120.00050 * 2 1 3 32 32 H 0.96997 * 119.99812 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99536 * 39.69692 * 13 3 2 34 34 H 1.09004 * 109.46936 * 56.25627 * 14 13 3 35 35 H 1.08994 * 109.47164 * 296.25910 * 14 13 3 36 36 H 1.07999 * 119.96750 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.03007 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.46404 * 299.99683 * 20 19 18 39 39 H 1.08991 * 109.47125 * 59.99412 * 20 19 18 40 40 H 1.08003 * 120.02449 * 179.72089 * 25 18 17 41 41 H 1.07997 * 119.96949 * 180.23038 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1939 1.1507 6 1 0.8150 3.0671 0.9617 7 6 1.6309 1.7668 2.4448 8 7 2.3695 0.7032 2.6750 9 14 0.8652 2.6986 3.8712 10 1 0.0852 3.8493 3.3490 11 1 -0.0362 1.7925 4.6274 12 1 1.9374 3.1943 4.7712 13 7 1.6704 2.0926 -1.2644 14 6 2.6516 1.7945 -2.3162 15 6 2.1926 2.4000 -3.6176 16 6 2.5707 3.6875 -3.9512 17 6 2.1509 4.2450 -5.1433 18 6 1.3496 3.5118 -6.0065 19 8 0.9358 4.0578 -7.1801 20 6 0.1126 3.2452 -8.0192 21 6 -0.2514 4.0239 -9.2849 22 9 0.9173 4.3696 -9.9719 23 9 -1.0568 3.2281 -10.1066 24 9 -0.9470 5.1858 -8.9337 25 6 0.9674 2.2220 -5.6672 26 6 1.3942 1.6671 -4.4762 27 1 -0.3634 -1.0273 -0.0258 28 1 -0.3633 0.4913 0.9026 29 1 -0.3633 0.5361 -0.8768 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.5163 0.4025 3.5854 33 1 0.7407 1.8242 -1.5506 34 1 2.7446 0.7145 -2.4308 35 1 3.6186 2.2152 -2.0408 36 1 3.1940 4.2580 -3.2786 37 1 2.4461 5.2509 -5.4031 38 1 0.6544 2.3398 -8.2924 39 1 -0.7980 2.9762 -7.4840 40 1 0.3400 1.6508 -6.3354 41 1 1.0999 0.6618 -4.2134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184093215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:32 Heat of formation + Delta-G solvation = -170.293924 kcal Electronic energy + Delta-G solvation = -25831.800279 eV Core-core repulsion = 21489.806225 eV Total energy + Delta-G solvation = -4341.994054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.54013 -48.10047 -47.98416 -40.40106 -38.13426 -36.29566 -32.98785 -31.52603 -31.08058 -30.41493 -29.04386 -26.40943 -24.47361 -24.07479 -23.21152 -22.44222 -21.07761 -19.31096 -19.28500 -19.07195 -18.19795 -18.01863 -16.38639 -16.21679 -15.77535 -15.29157 -14.94384 -14.83073 -14.78704 -14.44925 -14.43565 -14.30504 -14.16011 -14.15643 -13.62544 -13.46990 -13.26303 -13.07131 -12.70488 -12.44950 -12.14147 -12.11955 -11.73663 -11.43501 -11.17085 -10.93324 -10.89598 -10.63483 -10.53817 -9.99827 -9.84142 -9.58227 -9.02070 -8.98290 -8.36362 -8.21234 -7.23399 -5.99122 -4.00501 1.33636 1.37731 1.85848 2.69041 3.26746 3.30567 3.39061 3.44139 3.48499 3.74794 3.92476 4.38992 4.44175 4.46336 4.74529 4.77551 5.07463 5.27082 5.32921 5.41451 5.55000 5.59856 5.86892 6.07761 6.14322 6.24133 6.29341 6.33632 6.36262 6.54046 6.64427 6.80177 6.86103 7.11180 7.24233 7.25916 7.47656 7.67318 7.87736 8.25709 8.51128 8.59720 9.05696 9.63379 11.08003 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.002226 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.123692 B =12574.007429 C =12664.791936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.214 3.786 4 H 0.034 0.966 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.096 3.904 15 C -0.094 4.094 16 C -0.059 4.059 17 C -0.142 4.142 18 C 0.110 3.890 19 O -0.304 6.304 20 C 0.015 3.985 21 C 0.465 3.535 22 F -0.174 7.174 23 F -0.173 7.173 24 F -0.173 7.173 25 C -0.206 4.206 26 C -0.077 4.077 27 H 0.022 0.978 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.010 0.990 31 H 0.092 0.908 32 H 0.258 0.742 33 H 0.327 0.673 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 2.404 -22.420 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.033 4.033 15 C -0.095 4.095 16 C -0.077 4.077 17 C -0.161 4.161 18 C 0.066 3.934 19 O -0.218 6.218 20 C -0.062 4.062 21 C 0.411 3.589 22 F -0.155 7.155 23 F -0.155 7.155 24 F -0.154 7.154 25 C -0.224 4.224 26 C -0.096 4.096 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.145 0.855 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.940 3.116 -22.188 22.598 hybrid contribution -0.830 -0.708 0.396 1.161 sum -3.770 2.407 -21.792 22.246 Atomic orbital electron populations 1.21565 0.97674 0.97961 1.01279 1.22109 0.95037 1.01174 1.00196 1.19236 0.96143 0.88641 0.85322 0.94856 1.21092 1.30367 1.11483 0.89674 0.91967 1.24913 0.95580 0.95184 0.98721 1.69892 1.39349 1.24163 1.20230 0.86523 0.79026 0.79931 0.82445 1.19737 1.21260 1.21189 1.60965 1.03781 1.63143 1.03016 1.20885 0.97434 0.96786 0.88239 1.20081 0.98235 0.94621 0.96514 1.20952 0.97890 0.94397 0.94480 1.20413 1.00764 1.00645 0.94241 1.18836 0.96816 0.92641 0.85060 1.86003 1.65120 1.41069 1.29612 1.23735 0.98954 0.94240 0.89287 1.20033 0.75034 0.78440 0.85429 1.93236 1.48110 1.92614 1.81590 1.93227 1.74101 1.73854 1.74283 1.93242 1.79641 1.50760 1.91802 1.21099 1.06095 0.95088 1.00163 1.20884 0.96076 0.99773 0.92850 0.95925 0.91507 0.95218 0.97105 0.88931 0.93179 0.85468 0.95350 0.90843 0.84699 0.85165 0.87425 0.87349 0.85854 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.39 37.16 0.35 -2.29 16 2 C -0.15 -3.29 5.50 -26.73 -0.15 -3.44 16 3 C 0.21 5.10 2.33 -68.87 -0.16 4.94 16 4 H 0.03 0.88 7.86 -51.93 -0.41 0.47 16 5 C -0.49 -12.89 7.35 -34.44 -0.25 -13.14 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.51 5.22 -17.82 -0.09 1.42 16 8 N -0.90 -24.85 11.39 55.43 0.63 -24.22 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.68 -13.70 6.24 -109.22 -0.68 -14.38 16 14 C 0.10 1.61 5.61 -4.98 -0.03 1.59 16 15 C -0.09 -1.35 5.36 -104.60 -0.56 -1.91 16 16 C -0.06 -0.78 9.69 -39.61 -0.38 -1.17 16 17 C -0.14 -1.74 9.99 -39.43 -0.39 -2.14 16 18 C 0.11 1.30 6.69 -39.21 -0.26 1.03 16 19 O -0.30 -3.27 10.02 -19.41 -0.19 -3.46 16 20 C 0.02 0.11 4.70 37.16 0.17 0.29 16 21 C 0.47 3.81 3.32 37.16 0.12 3.93 16 22 F -0.17 -1.65 17.26 2.25 0.04 -1.62 16 23 F -0.17 -1.34 17.32 2.25 0.04 -1.30 16 24 F -0.17 -1.69 17.26 2.25 0.04 -1.65 16 25 C -0.21 -2.26 9.04 -39.43 -0.36 -2.61 16 26 C -0.08 -0.97 9.69 -39.60 -0.38 -1.36 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 1.53 7.05 -51.93 -0.37 1.16 16 29 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 30 H 0.01 0.22 7.24 -51.93 -0.38 -0.16 16 31 H 0.09 2.37 6.25 -51.93 -0.32 2.04 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.33 6.40 6.55 -39.29 -0.26 6.15 16 34 H 0.03 0.48 7.18 -51.93 -0.37 0.10 16 35 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 36 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.11 0.57 7.67 -51.93 -0.40 0.17 16 39 H 0.11 0.61 7.65 -51.93 -0.40 0.21 16 40 H 0.12 0.99 6.30 -52.48 -0.33 0.66 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 350.90 15.07 5.29 5.29 Total: -1.00 -28.41 350.90 -7.46 -35.87 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.22 Total: 4.28 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -2.38 Total: -14.85 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: -0.05 Total: -38.60 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.19 Total: -3.46 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.12 Total: -4.57 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.41 -7.46 -35.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184093215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.425 kcal (2) G-P(sol) polarization free energy of solvation -28.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds