Wall clock time and date at job start Tue Mar 31 2020 12:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47029 * 2 1 4 4 H 1.09007 * 109.47010 * 174.09112 * 3 2 1 5 5 C 1.50698 * 109.47596 * 54.08624 * 3 2 1 6 6 H 1.07996 * 120.00565 * 239.99722 * 5 3 2 7 7 C 1.37878 * 119.99766 * 60.00078 * 5 3 2 8 8 N 1.31521 * 120.00047 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00053 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47031 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46926 * 119.99947 * 9 7 5 12 12 H 1.48500 * 109.47332 * 239.99791 * 9 7 5 13 13 N 1.46904 * 109.47294 * 294.08577 * 3 2 1 14 14 C 1.46903 * 111.00121 * 275.74738 * 13 3 2 15 15 C 1.50695 * 109.47333 * 176.25629 * 14 13 3 16 16 C 1.38270 * 119.94642 * 89.99747 * 15 14 13 17 17 C 1.38138 * 120.05793 * 180.02562 * 16 15 14 18 18 C 1.38739 * 119.94585 * 359.97438 * 17 16 15 19 19 O 1.35896 * 120.05712 * 180.02562 * 18 17 16 20 20 C 1.42899 * 117.00175 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47172 * 179.97438 * 20 19 18 22 22 F 1.39906 * 109.47126 * 59.99736 * 21 20 19 23 23 F 1.39902 * 109.46923 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.47022 * 299.99461 * 21 20 19 25 25 C 1.38732 * 119.88419 * 0.27706 * 18 17 16 26 26 C 1.38143 * 119.94644 * 359.47195 * 25 18 17 27 27 H 1.08999 * 109.47494 * 178.56039 * 1 2 3 28 28 H 1.08999 * 109.46869 * 298.55882 * 1 2 3 29 29 H 1.09000 * 109.46959 * 58.55864 * 1 2 3 30 30 H 1.09002 * 109.46745 * 239.99777 * 2 1 3 31 31 H 1.09001 * 109.46530 * 120.00050 * 2 1 3 32 32 H 0.96997 * 119.99812 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99536 * 39.69692 * 13 3 2 34 34 H 1.09004 * 109.46936 * 56.25627 * 14 13 3 35 35 H 1.08994 * 109.47164 * 296.25910 * 14 13 3 36 36 H 1.07999 * 119.96750 * 359.97438 * 16 15 14 37 37 H 1.08003 * 120.03007 * 179.97438 * 17 16 15 38 38 H 1.08998 * 109.46404 * 299.99683 * 20 19 18 39 39 H 1.08991 * 109.47125 * 59.99412 * 20 19 18 40 40 H 1.08003 * 120.02449 * 179.72089 * 25 18 17 41 41 H 1.07997 * 119.96949 * 180.23038 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1058 5 6 1.4218 2.1939 1.1507 6 1 0.8150 3.0671 0.9617 7 6 1.6309 1.7668 2.4448 8 7 2.3695 0.7032 2.6750 9 14 0.8652 2.6986 3.8712 10 1 0.0852 3.8493 3.3490 11 1 -0.0362 1.7925 4.6274 12 1 1.9374 3.1943 4.7712 13 7 1.6704 2.0926 -1.2644 14 6 2.6516 1.7945 -2.3162 15 6 2.1926 2.4000 -3.6176 16 6 2.5707 3.6875 -3.9512 17 6 2.1509 4.2450 -5.1433 18 6 1.3496 3.5118 -6.0065 19 8 0.9358 4.0578 -7.1801 20 6 0.1126 3.2452 -8.0192 21 6 -0.2514 4.0239 -9.2849 22 9 0.9173 4.3696 -9.9719 23 9 -1.0568 3.2281 -10.1066 24 9 -0.9470 5.1858 -8.9337 25 6 0.9674 2.2220 -5.6672 26 6 1.3942 1.6671 -4.4762 27 1 -0.3634 -1.0273 -0.0258 28 1 -0.3633 0.4913 0.9026 29 1 -0.3633 0.5361 -0.8768 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.5163 0.4025 3.5854 33 1 0.7407 1.8242 -1.5506 34 1 2.7446 0.7145 -2.4308 35 1 3.6186 2.2152 -2.0408 36 1 3.1940 4.2580 -3.2786 37 1 2.4461 5.2509 -5.4031 38 1 0.6544 2.3398 -8.2924 39 1 -0.7980 2.9762 -7.4840 40 1 0.3400 1.6508 -6.3354 41 1 1.0999 0.6618 -4.2134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184093215.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:31 Heat of formation + Delta-G solvation = -185.884994 kcal Electronic energy + Delta-G solvation = -25832.476358 eV Core-core repulsion = 21489.806225 eV Total energy + Delta-G solvation = -4342.670133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.19301 -48.73731 -48.67777 -41.26050 -39.19558 -37.86702 -34.63905 -32.96582 -32.14065 -31.38992 -30.23366 -28.17987 -25.75802 -25.04682 -24.86788 -23.31770 -22.11962 -21.13881 -20.00283 -19.72556 -18.90128 -18.78018 -18.20317 -16.91245 -16.87658 -16.74870 -16.44981 -15.81719 -15.60154 -15.50072 -15.36249 -15.11402 -15.09234 -14.84335 -14.82922 -14.71100 -14.40580 -14.29955 -14.10702 -13.83471 -13.49720 -13.28378 -12.91765 -12.81044 -12.74568 -12.42994 -12.28984 -12.12509 -11.88076 -11.74351 -11.60707 -11.37497 -10.93593 -10.41881 -9.93549 -9.21001 -8.84657 -8.03812 -6.11796 0.39708 0.41686 1.20591 1.42245 1.45694 1.56433 2.01522 2.46946 2.66341 2.76333 2.90741 3.25200 3.28728 3.77448 3.83616 3.90500 3.95582 4.02262 4.10671 4.32498 4.47025 4.56359 4.58179 4.64895 4.74267 4.78421 4.87745 5.11762 5.13296 5.23579 5.35141 5.38778 5.46286 5.71110 5.71620 5.76502 5.78330 5.87512 6.24277 6.34711 6.70783 6.88273 7.01990 7.56122 9.01513 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.026913 B = 0.002226 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.123692 B =12574.007429 C =12664.791936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.220 3.780 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.051 0.949 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.102 3.898 15 C -0.114 4.114 16 C -0.068 4.068 17 C -0.151 4.151 18 C 0.115 3.885 19 O -0.317 6.317 20 C 0.009 3.991 21 C 0.466 3.534 22 F -0.184 7.184 23 F -0.169 7.169 24 F -0.185 7.185 25 C -0.198 4.198 26 C -0.079 4.079 27 H 0.043 0.957 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.258 0.742 33 H 0.332 0.668 34 H 0.030 0.970 35 H 0.061 0.939 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.159 0.841 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 2.079 -24.097 24.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.313 5.313 14 C -0.027 4.027 15 C -0.115 4.115 16 C -0.087 4.087 17 C -0.170 4.170 18 C 0.071 3.929 19 O -0.231 6.231 20 C -0.067 4.067 21 C 0.412 3.588 22 F -0.166 7.166 23 F -0.151 7.151 24 F -0.166 7.166 25 C -0.217 4.217 26 C -0.098 4.098 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.151 0.849 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.177 0.823 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.400 2.797 -23.890 24.452 hybrid contribution -0.378 -0.577 0.769 1.033 sum -4.778 2.220 -23.121 23.714 Atomic orbital electron populations 1.21448 0.95954 0.99325 1.00852 1.21946 0.96491 0.99939 0.99438 1.18971 0.93760 0.89560 0.86564 0.98367 1.21306 1.30126 1.11265 0.90910 0.93094 1.25567 0.96049 0.95921 1.00903 1.70017 1.40324 1.25246 1.20552 0.85640 0.78226 0.78864 0.79697 1.19448 1.20787 1.21136 1.60805 1.04754 1.62927 1.02808 1.20787 0.96164 0.97016 0.88691 1.19871 1.00325 0.95380 0.95904 1.20961 0.98275 0.94281 0.95141 1.20541 1.01067 1.01323 0.94063 1.18910 0.96061 0.92805 0.85170 1.85972 1.65599 1.42157 1.29419 1.24051 0.99898 0.94309 0.88438 1.20180 0.74623 0.78159 0.85815 1.93219 1.48683 1.92739 1.81913 1.93236 1.73962 1.73604 1.74261 1.93221 1.79898 1.51624 1.91897 1.21401 1.05600 0.94831 0.99833 1.21035 0.95469 1.00156 0.93098 0.93778 0.94129 0.93215 0.95287 0.92152 0.93258 0.84880 0.95193 0.92020 0.85087 0.84191 0.84764 0.85057 0.82309 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 9.39 71.98 0.68 -4.08 16 2 C -0.14 -6.25 5.50 30.59 0.17 -6.09 16 3 C 0.22 10.68 2.33 44.17 0.10 10.79 16 4 H 0.00 -0.09 7.86 -2.38 -0.02 -0.11 16 5 C -0.50 -26.71 7.35 25.60 0.19 -26.53 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 7 C 0.01 0.74 5.22 84.65 0.44 1.18 16 8 N -0.92 -52.03 11.39 21.45 0.24 -51.79 16 9 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 13 N -0.68 -27.57 6.24 -499.46 -3.12 -30.69 16 14 C 0.10 3.45 5.61 85.55 0.48 3.93 16 15 C -0.11 -3.17 5.36 -19.85 -0.11 -3.28 16 16 C -0.07 -1.79 9.69 22.25 0.22 -1.57 16 17 C -0.15 -3.52 9.99 22.37 0.22 -3.29 16 18 C 0.11 2.39 6.69 22.51 0.15 2.54 16 19 O -0.32 -5.93 10.02 -92.39 -0.93 -6.85 16 20 C 0.01 0.11 4.70 71.98 0.34 0.44 16 21 C 0.47 6.57 3.32 71.98 0.24 6.81 16 22 F -0.18 -3.18 17.26 44.97 0.78 -2.41 16 23 F -0.17 -2.21 17.32 44.97 0.78 -1.43 16 24 F -0.18 -3.31 17.26 44.97 0.78 -2.53 16 25 C -0.20 -3.65 9.04 22.37 0.20 -3.44 16 26 C -0.08 -1.80 9.69 22.25 0.22 -1.58 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.83 7.05 -2.39 -0.02 1.81 16 29 H 0.05 1.77 6.42 -2.39 -0.02 1.75 16 30 H 0.03 1.17 7.24 -2.39 -0.02 1.15 16 31 H 0.06 3.14 6.25 -2.39 -0.01 3.12 16 32 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.33 12.69 6.55 -89.69 -0.59 12.10 16 34 H 0.03 0.99 7.18 -2.38 -0.02 0.98 16 35 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 36 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.13 0.81 7.67 -2.39 -0.02 0.80 16 39 H 0.13 0.90 7.65 -2.39 -0.02 0.88 16 40 H 0.16 1.72 6.30 -2.91 -0.02 1.70 16 41 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -61.75 350.90 4.57 -57.18 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.48 Total: 17.11 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 3.54 Total: -24.16 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -2.87 Total: -82.47 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.93 Total: -6.85 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 2.33 Total: -6.37 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -61.75 4.57 -57.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184093215.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.703 kcal (2) G-P(sol) polarization free energy of solvation -61.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds