Wall clock time and date at job start Tue Mar 31 2020 12:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.38323 * 120.00353 * 275.00379 * 13 3 2 15 15 N 1.32541 * 120.63451 * 359.97438 * 14 13 3 16 16 C 1.32088 * 121.13675 * 180.02562 * 15 14 13 17 17 C 1.50701 * 118.86169 * 179.97438 * 16 15 14 18 18 N 1.31304 * 122.27722 * 0.02562 * 16 15 14 19 19 C 1.34086 * 120.87682 * 359.97421 * 18 16 15 20 20 S 1.75399 * 131.29769 * 180.02562 * 19 18 16 21 21 C 1.76331 * 92.45338 * 179.97438 * 20 19 18 22 22 C 1.32535 * 111.35843 * 0.05230 * 21 20 19 23 23 C 1.39093 * 119.09620 * 359.71855 * 19 18 16 24 24 C 1.52880 * 110.19929 * 179.97438 * 22 21 20 25 25 C 1.54123 * 104.89943 * 17.58531 * 24 22 21 26 26 C 1.52608 * 138.12552 * 180.02562 * 21 20 19 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 1.08999 * 109.46653 * 90.00392 * 17 16 15 35 35 H 1.09003 * 109.46915 * 210.00114 * 17 16 15 36 36 H 1.08996 * 109.46606 * 330.00073 * 17 16 15 37 37 H 1.09002 * 110.35326 * 136.44438 * 24 22 21 38 38 H 1.09003 * 110.34873 * 258.62350 * 24 22 21 39 39 H 1.08996 * 111.01426 * 91.48206 * 25 24 22 40 40 H 1.08999 * 111.01072 * 215.31544 * 25 24 22 41 41 H 1.09004 * 110.36641 * 281.31845 * 26 21 20 42 42 H 1.09000 * 110.35997 * 43.63472 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4031 2.6792 1.3701 15 7 -0.4531 2.6520 0.3587 16 6 -1.6484 3.2048 0.4606 17 6 -2.5810 3.1443 -0.7217 18 7 -2.0518 3.8060 1.5560 19 6 -1.2550 3.8838 2.6316 20 16 -1.5073 4.6078 4.2091 21 6 0.0976 4.1356 4.7664 22 6 0.7632 3.4832 3.8241 23 6 0.0117 3.3117 2.5778 24 6 2.1489 3.0875 4.3344 25 6 2.0549 3.2051 5.8682 26 6 0.9453 4.2634 6.0289 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -3.1875 2.2408 -0.6601 35 1 -3.2310 4.0193 -0.7167 36 1 -1.9989 3.1293 -1.6431 37 1 2.3805 2.0621 4.0462 38 1 2.9050 3.7698 3.9458 39 1 1.7582 2.2564 6.3155 40 1 2.9956 3.5571 6.2916 41 1 1.3792 5.2612 6.0952 42 1 0.3438 4.0510 6.9127 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184153536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:48 Heat of formation + Delta-G solvation = 63.706609 kcal Electronic energy + Delta-G solvation = -24630.511943 eV Core-core repulsion = 21315.567276 eV Total energy + Delta-G solvation = -3314.944667 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.68040 -38.50016 -36.69512 -33.80940 -33.37777 -31.58777 -30.70583 -29.90196 -28.31582 -27.10423 -26.25357 -23.96027 -22.83017 -22.08542 -21.06301 -19.95723 -19.12009 -17.90102 -16.78692 -16.74581 -16.09041 -15.72514 -15.05283 -15.00899 -14.82969 -13.86242 -13.55458 -13.14718 -12.92813 -12.86382 -12.84504 -12.64318 -12.40631 -12.16706 -11.99557 -11.80560 -11.51185 -11.34656 -11.21845 -11.13255 -10.99795 -10.78426 -10.78130 -10.52599 -10.38264 -10.27024 -10.08279 -9.68333 -9.13520 -8.68230 -8.62945 -8.47055 -8.03841 -7.10286 -6.21423 -4.31121 0.92732 1.31934 1.72594 2.10494 2.38695 3.17880 3.26297 3.28359 3.80418 4.23731 4.27318 4.34025 4.48648 4.55688 4.87421 4.89966 5.04929 5.10809 5.22381 5.46029 5.51545 5.59810 5.64898 5.79614 5.83651 5.84191 5.93871 6.05359 6.07589 6.19333 6.31209 6.37078 6.45379 6.52716 6.71083 6.94755 7.07028 7.25890 7.31731 7.43511 7.57150 7.76081 7.93432 8.12550 8.35801 8.68042 8.90050 9.35543 10.83794 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.004953 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.726120 B = 5651.931899 C = 7328.953740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.059 0.941 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.666 5.666 14 C 0.494 3.506 15 N -0.568 5.568 16 C 0.375 3.625 17 C -0.080 4.080 18 N -0.557 5.557 19 C 0.131 3.869 20 S 0.150 5.850 21 C -0.228 4.228 22 C -0.064 4.064 23 C -0.242 4.242 24 C -0.070 4.070 25 C -0.115 4.115 26 C -0.036 4.036 27 H 0.030 0.970 28 H 0.022 0.978 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.102 0.898 32 H 0.265 0.735 33 H 0.401 0.599 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.156 5.496 12.126 14.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.077 0.923 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.516 5.516 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.290 5.290 14 C 0.240 3.760 15 N -0.296 5.296 16 C 0.103 3.897 17 C -0.138 4.138 18 N -0.282 5.282 19 C -0.118 4.118 20 S 0.410 5.590 21 C -0.344 4.344 22 C -0.076 4.076 23 C -0.260 4.260 24 C -0.109 4.109 25 C -0.154 4.154 26 C -0.076 4.076 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.828 6.029 11.666 15.288 hybrid contribution 2.849 -0.786 0.114 2.958 sum -4.978 5.243 11.781 13.822 Atomic orbital electron populations 1.21828 0.98305 0.97912 1.01015 1.21935 0.92722 0.99533 1.02330 1.19005 0.94368 0.89341 0.80359 0.92320 1.21222 0.90524 1.39395 1.06495 0.92148 1.24840 0.98649 0.94615 0.95263 1.69886 1.35095 1.37375 1.09284 0.86404 0.84744 0.77853 0.78193 1.19755 1.20785 1.20787 1.45706 1.10317 1.54004 1.18939 1.18590 0.86959 0.84347 0.86154 1.68038 1.04591 1.26874 1.30116 1.22837 0.89112 0.85925 0.91859 1.20509 0.96875 1.03246 0.93215 1.67938 1.35248 1.25501 0.99509 1.23105 0.92104 0.97863 0.98761 1.83627 1.12324 1.60291 1.02743 1.25189 0.98350 1.08871 1.02023 1.20929 0.96582 0.98902 0.91238 1.19610 0.97407 1.12928 0.96061 1.21211 0.92295 1.02335 0.95071 1.22274 0.98610 0.99265 0.95273 1.20838 0.94140 0.99894 0.92683 0.95057 0.95923 0.92423 0.95240 0.87991 0.92504 0.76300 0.89894 0.90094 0.89461 0.90390 0.89617 0.90576 0.89948 0.90236 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.45 37.16 0.31 -2.50 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.51 2.25 -69.08 -0.16 6.35 16 4 H 0.06 1.60 7.57 -51.93 -0.39 1.20 16 5 C -0.54 -13.74 8.73 -34.44 -0.30 -14.04 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.63 11.29 55.43 0.63 -23.01 16 9 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 13 N -0.67 -13.92 5.14 -54.45 -0.28 -14.20 16 14 C 0.49 10.13 6.12 -154.52 -0.95 9.18 16 15 N -0.57 -11.67 6.47 -9.58 -0.06 -11.73 16 16 C 0.38 6.94 7.64 -157.36 -1.20 5.74 16 17 C -0.08 -1.12 10.30 36.01 0.37 -0.75 16 18 N -0.56 -10.43 10.37 -9.68 -0.10 -10.53 16 19 C 0.13 2.40 7.67 -16.25 -0.12 2.27 16 20 S 0.15 2.19 23.23 -107.50 -2.50 -0.31 16 21 C -0.23 -3.16 7.24 -35.27 -0.26 -3.42 16 22 C -0.06 -1.00 6.47 -102.10 -0.66 -1.66 16 23 C -0.24 -4.52 6.07 -104.86 -0.64 -5.15 16 24 C -0.07 -0.87 5.80 -26.21 -0.15 -1.03 16 25 C -0.12 -1.09 7.13 -25.53 -0.18 -1.28 16 26 C -0.04 -0.36 6.82 -26.32 -0.18 -0.54 16 27 H 0.03 0.66 5.59 -51.93 -0.29 0.37 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 1.24 7.69 -51.93 -0.40 0.84 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 32 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.40 7.66 6.31 -40.82 -0.26 7.40 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 0.99 7.31 -51.93 -0.38 0.62 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -28.75 346.68 -12.26 -41.00 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.80 Total: 6.71 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -4.35 Total: -8.20 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.18 Total: -59.46 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.50 Total: -0.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.75 -12.26 -41.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184153536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.709 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds