Wall clock time and date at job start Tue Mar 31 2020 12:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.38323 * 120.00353 * 275.00379 * 13 3 2 15 15 N 1.32541 * 120.63451 * 359.97438 * 14 13 3 16 16 C 1.32088 * 121.13675 * 180.02562 * 15 14 13 17 17 C 1.50701 * 118.86169 * 179.97438 * 16 15 14 18 18 N 1.31304 * 122.27722 * 0.02562 * 16 15 14 19 19 C 1.34086 * 120.87682 * 359.97421 * 18 16 15 20 20 S 1.75399 * 131.29769 * 180.02562 * 19 18 16 21 21 C 1.76331 * 92.45338 * 179.97438 * 20 19 18 22 22 C 1.32535 * 111.35843 * 0.05230 * 21 20 19 23 23 C 1.39093 * 119.09620 * 359.71855 * 19 18 16 24 24 C 1.52880 * 110.19929 * 179.97438 * 22 21 20 25 25 C 1.54123 * 104.89943 * 17.58531 * 24 22 21 26 26 C 1.52608 * 138.12552 * 180.02562 * 21 20 19 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 1.08999 * 109.46653 * 90.00392 * 17 16 15 35 35 H 1.09003 * 109.46915 * 210.00114 * 17 16 15 36 36 H 1.08996 * 109.46606 * 330.00073 * 17 16 15 37 37 H 1.09002 * 110.35326 * 136.44438 * 24 22 21 38 38 H 1.09003 * 110.34873 * 258.62350 * 24 22 21 39 39 H 1.08996 * 111.01426 * 91.48206 * 25 24 22 40 40 H 1.08999 * 111.01072 * 215.31544 * 25 24 22 41 41 H 1.09004 * 110.36641 * 281.31845 * 26 21 20 42 42 H 1.09000 * 110.35997 * 43.63472 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4031 2.6792 1.3701 15 7 -0.4531 2.6520 0.3587 16 6 -1.6484 3.2048 0.4606 17 6 -2.5810 3.1443 -0.7217 18 7 -2.0518 3.8060 1.5560 19 6 -1.2550 3.8838 2.6316 20 16 -1.5073 4.6078 4.2091 21 6 0.0976 4.1356 4.7664 22 6 0.7632 3.4832 3.8241 23 6 0.0117 3.3117 2.5778 24 6 2.1489 3.0875 4.3344 25 6 2.0549 3.2051 5.8682 26 6 0.9453 4.2634 6.0289 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -3.1875 2.2408 -0.6601 35 1 -3.2310 4.0193 -0.7167 36 1 -1.9989 3.1293 -1.6431 37 1 2.3805 2.0621 4.0462 38 1 2.9050 3.7698 3.9458 39 1 1.7582 2.2564 6.3155 40 1 2.9956 3.5571 6.2916 41 1 1.3792 5.2612 6.0952 42 1 0.3438 4.0510 6.9127 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184153536.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:48 Heat of formation + Delta-G solvation = 49.683076 kcal Electronic energy + Delta-G solvation = -24631.120049 eV Core-core repulsion = 21315.567276 eV Total energy + Delta-G solvation = -3315.552773 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06579 -39.55931 -38.38204 -35.26788 -34.90142 -33.36552 -32.27970 -31.09189 -29.39692 -28.76038 -27.48477 -25.55415 -24.52997 -23.46026 -22.06366 -21.72166 -20.31109 -19.33705 -18.38987 -18.29786 -17.40272 -16.85662 -16.76828 -16.33158 -16.24423 -15.60490 -14.93343 -14.74927 -14.49101 -13.99275 -13.87785 -13.80113 -13.66539 -13.51258 -13.23505 -13.19367 -13.01099 -12.86034 -12.80233 -12.56349 -12.34772 -12.13944 -12.07774 -12.02123 -11.93001 -11.75509 -11.54538 -11.38444 -11.02304 -10.55148 -10.06046 -9.97060 -9.34345 -8.53282 -8.18497 -6.35288 -0.39288 0.09681 0.25452 0.90342 1.15390 1.41642 1.43666 1.54230 2.22920 2.45415 2.80690 3.11298 3.16150 3.34750 3.47528 3.64062 3.79025 4.08245 4.16155 4.24225 4.50428 4.54869 4.59743 4.69543 4.74530 4.77965 4.80950 4.83895 4.87235 4.89551 5.03271 5.07595 5.15312 5.23325 5.33444 5.34423 5.38030 5.43962 5.55645 5.69811 5.75405 5.86263 6.10476 6.34885 6.64625 6.82669 7.32363 7.42169 8.86541 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.004953 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.726120 B = 5651.931899 C = 7328.953740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C 0.285 3.715 4 H 0.019 0.981 5 C -0.553 4.553 6 H 0.063 0.937 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.283 1.283 13 N -0.671 5.671 14 C 0.476 3.524 15 N -0.592 5.592 16 C 0.357 3.643 17 C -0.075 4.075 18 N -0.560 5.560 19 C 0.095 3.905 20 S 0.194 5.806 21 C -0.214 4.214 22 C -0.099 4.099 23 C -0.252 4.252 24 C -0.071 4.071 25 C -0.105 4.105 26 C -0.034 4.034 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.266 0.734 33 H 0.407 0.593 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 6.305 14.750 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.157 4.157 3 C 0.182 3.818 4 H 0.037 0.963 5 C -0.591 4.591 6 H 0.082 0.918 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.209 1.209 13 N -0.298 5.298 14 C 0.222 3.778 15 N -0.321 5.321 16 C 0.085 3.915 17 C -0.133 4.133 18 N -0.285 5.285 19 C -0.154 4.154 20 S 0.455 5.545 21 C -0.330 4.330 22 C -0.110 4.110 23 C -0.270 4.270 24 C -0.111 4.111 25 C -0.144 4.144 26 C -0.074 4.074 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.245 0.755 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.128 0.872 41 H 0.117 0.883 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.489 6.867 14.324 17.562 hybrid contribution 2.629 -0.943 -0.610 2.859 sum -4.861 5.923 13.714 15.709 Atomic orbital electron populations 1.21629 0.96655 0.98672 1.00353 1.21773 0.94089 0.98969 1.00907 1.18544 0.93504 0.89204 0.80568 0.96304 1.21531 0.91459 1.39347 1.06747 0.91842 1.25632 1.02918 0.94235 0.94923 1.70015 1.36807 1.38002 1.09731 0.85402 0.79543 0.77887 0.78149 1.18867 1.20332 1.20858 1.45344 1.11091 1.55221 1.18131 1.18822 0.86770 0.84958 0.87228 1.68045 1.05518 1.27772 1.30807 1.23583 0.89126 0.85739 0.93098 1.20613 0.96429 1.04853 0.91412 1.68032 1.35392 1.25299 0.99802 1.23759 0.92412 0.98882 1.00313 1.83439 1.12532 1.58792 0.99774 1.25896 0.97699 1.06270 1.03164 1.21206 0.98495 1.00830 0.90481 1.19918 0.98192 1.12301 0.96568 1.21320 0.90610 1.01713 0.97434 1.22319 0.99794 0.99633 0.92628 1.21067 0.93831 1.01187 0.91289 0.95364 0.94269 0.93364 0.95300 0.90467 0.92463 0.75538 0.88371 0.88162 0.89668 0.91339 0.89506 0.89940 0.87202 0.88261 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 8.45 71.98 0.61 -4.42 16 2 C -0.12 -5.72 5.45 30.59 0.17 -5.55 16 3 C 0.28 14.27 2.25 44.24 0.10 14.37 16 4 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 5 C -0.55 -28.91 8.73 25.60 0.22 -28.68 16 6 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 7 C 0.02 1.25 5.29 84.66 0.45 1.70 16 8 N -0.91 -50.14 11.29 21.45 0.24 -49.90 16 9 Si 0.97 41.40 29.54 68.60 2.03 43.43 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 N -0.67 -29.13 5.14 -326.18 -1.68 -30.81 16 14 C 0.48 20.18 6.12 133.93 0.82 21.00 16 15 N -0.59 -25.34 6.47 -184.22 -1.19 -26.53 16 16 C 0.36 13.47 7.64 138.81 1.06 14.53 16 17 C -0.07 -2.10 10.30 71.24 0.73 -1.36 16 18 N -0.56 -21.10 10.37 -184.53 -1.91 -23.01 16 19 C 0.09 3.45 7.67 84.55 0.65 4.10 16 20 S 0.19 5.29 23.23 -56.49 -1.31 3.97 16 21 C -0.21 -5.39 7.24 25.16 0.18 -5.21 16 22 C -0.10 -2.98 6.47 -18.14 -0.12 -3.09 16 23 C -0.25 -9.49 6.07 -20.02 -0.12 -9.61 16 24 C -0.07 -1.68 5.80 30.93 0.18 -1.50 16 25 C -0.11 -1.61 7.13 31.37 0.22 -1.39 16 26 C -0.03 -0.55 6.82 30.86 0.21 -0.34 16 27 H 0.03 1.22 5.59 -2.39 -0.01 1.21 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 2.15 7.69 -2.38 -0.02 2.14 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 4.14 5.95 -2.39 -0.01 4.12 16 32 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.41 16.08 6.31 -92.71 -0.58 15.49 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.07 1.71 7.31 -2.39 -0.02 1.70 16 38 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -64.13 346.68 2.00 -62.13 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.47 Total: 26.19 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 5.36 Total: -5.46 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -4.54 Total: -130.26 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -1.31 Total: 3.97 kcal Total: -64.13 2.00 -62.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184153536.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.810 kcal (2) G-P(sol) polarization free energy of solvation -64.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds