Wall clock time and date at job start Tue Mar 31 2020 12:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 13 13 O 1.45199 * 109.47297 * 59.99947 * 12 2 1 14 14 C 1.34230 * 117.00162 * 180.02562 * 13 12 2 15 15 O 1.20827 * 119.99778 * 359.97438 * 14 13 12 16 16 C 1.50692 * 120.00087 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47237 * 179.97438 * 16 14 13 18 18 H 1.09002 * 110.45215 * 305.69544 * 17 16 14 19 19 C 1.51136 * 110.51422 * 183.09701 * 17 16 14 20 20 C 1.37679 * 132.84514 * 61.35112 * 19 17 16 21 21 C 1.38392 * 119.91358 * 180.02562 * 20 19 17 22 22 C 1.38310 * 119.82462 * 359.97438 * 21 20 19 23 23 C 1.37930 * 120.37391 * 359.97438 * 22 21 20 24 24 C 1.38899 * 106.34523 * 241.35251 * 19 17 16 25 25 N 1.39532 * 110.22571 * 359.97438 * 24 19 17 26 26 C 1.34677 * 112.28999 * 359.91905 * 25 24 19 27 27 O 1.21285 * 126.60780 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 34 34 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 12 2 1 37 37 H 1.08999 * 109.47011 * 299.99860 * 16 14 13 38 38 H 1.09002 * 109.47416 * 59.99876 * 16 14 13 39 39 H 1.08004 * 120.04590 * 359.97438 * 20 19 17 40 40 H 1.07998 * 120.08858 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.81279 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.93378 * 180.02562 * 23 22 21 43 43 H 0.96996 * 123.87140 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0400 -0.7212 -1.2494 13 8 1.5560 -0.0366 -2.4349 14 6 1.9162 -0.5469 -3.6230 15 8 2.6133 -1.5327 -3.6708 16 6 1.4513 0.1096 -4.8972 17 6 1.9984 -0.6638 -6.0985 18 1 3.0820 -0.7591 -6.0287 19 6 1.6090 0.0184 -7.3897 20 6 1.8800 1.2644 -7.9090 21 6 1.3748 1.6209 -9.1471 22 6 0.5996 0.7229 -9.8582 23 6 0.3275 -0.5263 -9.3407 24 6 0.8318 -0.8922 -8.0940 25 7 0.6991 -2.0763 -7.3680 26 6 1.3514 -2.0294 -6.1906 27 8 1.4087 -2.9113 -5.3599 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 0.7096 1.1617 3.4844 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7489 -1.2494 37 1 0.3618 0.1089 -4.9297 38 1 1.8150 1.1366 -4.9305 39 1 2.4854 1.9630 -7.3505 40 1 1.5854 2.5976 -9.5570 41 1 0.2058 1.0012 -10.8246 42 1 -0.2782 -1.2221 -9.9022 43 1 0.1954 -2.8458 -7.6761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184774972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:39 Heat of formation + Delta-G solvation = -91.320275 kcal Electronic energy + Delta-G solvation = -26193.291269 eV Core-core repulsion = 22396.578510 eV Total energy + Delta-G solvation = -3796.712759 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.87162 -39.75269 -38.54786 -36.56464 -35.84860 -34.77166 -33.77373 -31.25868 -30.58334 -29.41367 -26.90042 -25.57898 -25.42127 -24.83907 -22.92796 -21.79473 -21.51093 -20.02724 -18.77657 -18.14752 -17.46224 -16.85526 -16.38387 -16.10823 -15.82832 -15.60028 -15.24606 -14.83263 -14.58037 -14.37262 -14.12866 -13.43032 -13.29856 -13.11749 -12.98811 -12.76623 -12.42178 -12.29687 -11.96421 -11.70423 -11.38451 -11.24204 -11.13065 -11.08797 -10.90358 -10.70465 -10.36903 -10.22550 -10.12591 -9.90129 -9.81278 -9.34653 -9.30666 -9.20355 -8.72204 -8.33994 -8.33640 -5.98513 -4.09800 0.83786 0.95105 2.31333 2.71091 2.75573 3.19946 3.32225 3.36166 3.40409 3.45844 3.84270 4.13718 4.41774 4.47363 4.58427 4.68113 4.91782 4.95223 5.05669 5.24869 5.27766 5.32883 5.46642 5.55995 5.61573 5.75853 6.01848 6.12883 6.17369 6.19792 6.30805 6.53638 6.54622 6.69918 6.79896 7.02846 7.14795 7.17711 7.22530 7.45738 7.66369 7.73563 7.84375 8.09024 8.19842 8.34718 8.44619 8.90069 9.55410 11.02718 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029168 B = 0.002641 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.737663 B =10598.806900 C =11098.023212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.086 3.914 13 O -0.350 6.350 14 C 0.443 3.557 15 O -0.494 6.494 16 C -0.092 4.092 17 C -0.070 4.070 18 H 0.133 0.867 19 C -0.140 4.140 20 C -0.060 4.060 21 C -0.144 4.144 22 C -0.083 4.083 23 C -0.144 4.144 24 C 0.152 3.848 25 N -0.668 5.668 26 C 0.527 3.473 27 O -0.460 6.460 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.016 0.984 31 H 0.084 0.916 32 H 0.022 0.978 33 H 0.016 0.984 34 H 0.261 0.739 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 3.053 -25.784 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.013 3.987 13 O -0.267 6.267 14 C 0.284 3.716 15 O -0.381 6.381 16 C -0.130 4.130 17 C -0.091 4.091 18 H 0.150 0.850 19 C -0.143 4.143 20 C -0.078 4.078 21 C -0.163 4.163 22 C -0.102 4.102 23 C -0.165 4.165 24 C 0.055 3.945 25 N -0.313 5.313 26 C 0.313 3.687 27 O -0.329 6.329 28 H 0.102 0.898 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.375 2.366 -24.967 25.116 hybrid contribution 0.125 -1.055 0.605 1.222 sum -1.250 1.311 -24.362 24.430 Atomic orbital electron populations 1.21769 0.97401 0.98941 1.00591 1.18232 0.93373 0.93045 0.88352 1.21767 0.98046 0.98224 1.00630 1.20919 1.31926 1.12268 0.89864 0.92568 1.24852 0.94817 0.94923 0.98750 1.69819 1.36383 1.22594 1.23350 0.86605 0.79217 0.79786 0.82082 1.20241 1.21220 1.20255 1.23640 0.98070 0.95829 0.81115 1.86487 1.69464 1.55864 1.14853 1.23240 0.78851 0.83028 0.86450 1.90716 1.34937 1.24419 1.88048 1.21061 1.03541 1.00744 0.87646 1.20495 1.03764 0.92444 0.92380 0.84985 1.19739 1.02704 0.95532 0.96279 1.20350 0.98196 0.93991 0.95291 1.21076 0.99927 1.00242 0.95044 1.20895 0.97141 0.92522 0.99622 1.20366 1.04087 0.98162 0.93901 1.18182 0.96880 0.86301 0.93181 1.43940 1.51944 1.15769 1.19646 1.20560 0.78253 0.89543 0.80363 1.90925 1.58123 1.42673 1.41166 0.89761 0.95870 0.96501 0.89766 0.95852 0.96466 0.92885 0.92627 0.92581 0.87644 0.86392 0.85061 0.85242 0.85262 0.85660 0.75033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.11 37.16 0.30 -2.91 16 2 C 0.07 1.77 0.58 -155.66 -0.09 1.68 16 3 C -0.13 -3.15 8.11 37.16 0.30 -2.85 16 4 C -0.51 -14.03 8.01 -34.44 -0.28 -14.30 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 7 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.09 2.00 4.26 37.16 0.16 2.15 16 13 O -0.35 -7.19 8.88 -39.26 -0.35 -7.54 16 14 C 0.44 8.00 7.65 36.00 0.28 8.27 16 15 O -0.49 -10.34 13.53 -26.09 -0.35 -10.69 16 16 C -0.09 -1.14 5.34 -27.89 -0.15 -1.29 16 17 C -0.07 -0.81 2.60 -92.37 -0.24 -1.05 16 18 H 0.13 1.55 7.96 -51.93 -0.41 1.14 16 19 C -0.14 -1.29 5.67 -104.37 -0.59 -1.88 16 20 C -0.06 -0.43 10.04 -39.73 -0.40 -0.83 16 21 C -0.14 -0.87 10.07 -39.50 -0.40 -1.26 16 22 C -0.08 -0.48 10.02 -39.67 -0.40 -0.88 16 23 C -0.14 -0.98 10.07 -39.27 -0.40 -1.37 16 24 C 0.15 1.36 7.11 -83.69 -0.60 0.77 16 25 N -0.67 -6.72 5.89 -9.63 -0.06 -6.77 16 26 C 0.53 7.29 7.85 -10.69 -0.08 7.21 16 27 O -0.46 -8.53 15.75 -16.51 -0.26 -8.79 16 28 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 31 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 36 H 0.06 1.35 8.13 -51.93 -0.42 0.92 16 37 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 41 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.41 3.22 8.96 -40.82 -0.37 2.85 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -33.05 356.43 -8.80 -41.85 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.98 Total: 0.98 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.67 Total: -6.78 kcal Atomic # 7 Polarization: -31.07 SS G_CDS: 0.46 Total: -30.61 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.96 Total: -27.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.05 -8.80 -41.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184774972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.470 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds