Wall clock time and date at job start Tue Mar 31 2020 12:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 13 13 O 1.45199 * 109.47297 * 59.99947 * 12 2 1 14 14 C 1.34230 * 117.00162 * 180.02562 * 13 12 2 15 15 O 1.20827 * 119.99778 * 359.97438 * 14 13 12 16 16 C 1.50692 * 120.00087 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47237 * 179.97438 * 16 14 13 18 18 H 1.09002 * 110.45215 * 305.69544 * 17 16 14 19 19 C 1.51136 * 110.51422 * 183.09701 * 17 16 14 20 20 C 1.37679 * 132.84514 * 61.35112 * 19 17 16 21 21 C 1.38392 * 119.91358 * 180.02562 * 20 19 17 22 22 C 1.38310 * 119.82462 * 359.97438 * 21 20 19 23 23 C 1.37930 * 120.37391 * 359.97438 * 22 21 20 24 24 C 1.38899 * 106.34523 * 241.35251 * 19 17 16 25 25 N 1.39532 * 110.22571 * 359.97438 * 24 19 17 26 26 C 1.34677 * 112.28999 * 359.91905 * 25 24 19 27 27 O 1.21285 * 126.60780 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 34 34 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47050 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 12 2 1 37 37 H 1.08999 * 109.47011 * 299.99860 * 16 14 13 38 38 H 1.09002 * 109.47416 * 59.99876 * 16 14 13 39 39 H 1.08004 * 120.04590 * 359.97438 * 20 19 17 40 40 H 1.07998 * 120.08858 * 179.97438 * 21 20 19 41 41 H 1.08002 * 119.81279 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.93378 * 180.02562 * 23 22 21 43 43 H 0.96996 * 123.87140 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0400 -0.7212 -1.2494 13 8 1.5560 -0.0366 -2.4349 14 6 1.9162 -0.5469 -3.6230 15 8 2.6133 -1.5327 -3.6708 16 6 1.4513 0.1096 -4.8972 17 6 1.9984 -0.6638 -6.0985 18 1 3.0820 -0.7591 -6.0287 19 6 1.6090 0.0184 -7.3897 20 6 1.8800 1.2644 -7.9090 21 6 1.3748 1.6209 -9.1471 22 6 0.5996 0.7229 -9.8582 23 6 0.3275 -0.5263 -9.3407 24 6 0.8318 -0.8922 -8.0940 25 7 0.6991 -2.0763 -7.3680 26 6 1.3514 -2.0294 -6.1906 27 8 1.4087 -2.9113 -5.3599 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 0.7096 1.1617 3.4844 35 1 3.1300 -0.7208 -1.2496 36 1 1.6767 -1.7489 -1.2494 37 1 0.3618 0.1089 -4.9297 38 1 1.8150 1.1366 -4.9305 39 1 2.4854 1.9630 -7.3505 40 1 1.5854 2.5976 -9.5570 41 1 0.2058 1.0012 -10.8246 42 1 -0.2782 -1.2221 -9.9022 43 1 0.1954 -2.8458 -7.6761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184774972.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:38 Heat of formation + Delta-G solvation = -109.753007 kcal Electronic energy + Delta-G solvation = -26194.090572 eV Core-core repulsion = 22396.578510 eV Total energy + Delta-G solvation = -3797.512062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.71999 -41.23677 -39.42129 -38.31035 -36.67057 -36.58949 -34.70040 -33.27483 -31.27964 -30.10679 -28.11201 -27.57722 -27.33744 -26.54101 -23.53320 -22.77495 -22.40853 -21.21185 -20.69392 -18.95917 -18.67022 -17.98443 -17.74562 -17.66551 -17.21730 -16.76431 -16.69550 -16.22357 -15.67195 -15.17689 -14.99609 -14.78480 -14.66914 -14.54189 -14.05622 -13.90818 -13.72326 -13.49777 -13.28039 -13.15925 -13.00186 -12.80955 -12.67160 -12.60376 -12.32632 -12.14526 -11.84367 -11.80704 -11.71021 -11.61098 -11.26649 -11.20461 -11.06468 -10.75121 -10.41195 -9.79790 -9.00116 -8.05663 -6.23788 0.19013 0.43016 1.29687 1.38612 1.43013 1.43568 1.50913 1.82559 1.95812 2.44443 2.88675 3.02155 3.17302 3.27918 3.61054 3.88842 3.97280 4.12263 4.24123 4.26369 4.29502 4.43279 4.48603 4.55073 4.61430 4.65778 4.78489 4.85405 5.04170 5.09557 5.18196 5.19200 5.22990 5.36575 5.51086 5.60443 5.62147 5.63446 5.67599 5.70654 5.80439 6.07301 6.11104 6.17245 6.36652 6.77565 6.85690 6.93671 7.43877 8.93908 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.029168 B = 0.002641 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.737663 B =10598.806900 C =11098.023212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.062 3.938 3 C -0.117 4.117 4 C -0.538 4.538 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.100 3.900 13 O -0.354 6.354 14 C 0.437 3.563 15 O -0.525 6.525 16 C -0.080 4.080 17 C -0.066 4.066 18 H 0.126 0.874 19 C -0.148 4.148 20 C -0.065 4.065 21 C -0.137 4.137 22 C -0.081 4.081 23 C -0.140 4.140 24 C 0.126 3.874 25 N -0.657 5.657 26 C 0.517 3.483 27 O -0.523 6.523 28 H 0.065 0.935 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.064 0.936 32 H 0.020 0.980 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.118 0.882 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.144 0.856 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 5.021 -28.311 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.061 3.939 3 C -0.175 4.175 4 C -0.576 4.576 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.026 3.974 13 O -0.270 6.270 14 C 0.280 3.720 15 O -0.414 6.414 16 C -0.117 4.117 17 C -0.087 4.087 18 H 0.144 0.856 19 C -0.151 4.151 20 C -0.083 4.083 21 C -0.156 4.156 22 C -0.100 4.100 23 C -0.161 4.161 24 C 0.030 3.970 25 N -0.301 5.301 26 C 0.304 3.696 27 O -0.398 6.398 28 H 0.084 0.916 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.136 0.864 38 H 0.173 0.827 39 H 0.167 0.833 40 H 0.174 0.826 41 H 0.177 0.823 42 H 0.162 0.838 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -1.786 4.373 -27.565 27.967 hybrid contribution 0.221 -1.603 1.189 2.008 sum -1.565 2.770 -26.376 26.567 Atomic orbital electron populations 1.21628 0.97256 0.98329 1.00429 1.18256 0.93505 0.93505 0.88583 1.21609 0.97804 0.97588 1.00513 1.21180 1.32494 1.12496 0.91387 0.93627 1.25497 0.94937 0.95577 1.01080 1.69921 1.36585 1.23173 1.23966 0.85716 0.78739 0.78664 0.79106 1.19922 1.20341 1.20290 1.23173 0.97389 0.94781 0.82032 1.86478 1.69737 1.55744 1.15090 1.24399 0.77923 0.82683 0.86953 1.90711 1.36480 1.25946 1.88275 1.21215 1.04222 1.01966 0.84336 1.20406 1.03160 0.91620 0.93551 0.85636 1.19636 1.03755 0.96613 0.95066 1.20633 0.98297 0.93331 0.96021 1.21475 0.98588 1.01307 0.94211 1.21321 0.96292 0.91735 1.00610 1.20689 1.03469 0.99044 0.92888 1.18433 0.98494 0.85728 0.94353 1.43776 1.50923 1.16703 1.18679 1.20952 0.78244 0.89780 0.80596 1.90883 1.60747 1.44674 1.43466 0.91577 0.96671 0.94774 0.91722 0.96034 0.94528 0.92724 0.93327 0.94408 0.86382 0.82677 0.83317 0.82596 0.82350 0.83775 0.74117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.11 71.98 0.58 -5.36 16 2 C 0.06 3.15 0.58 -52.93 -0.03 3.12 16 3 C -0.12 -5.72 8.11 71.98 0.58 -5.13 16 4 C -0.54 -30.03 8.01 25.60 0.21 -29.82 16 5 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 6 C 0.03 1.60 5.15 84.66 0.44 2.04 16 7 N -0.90 -49.74 9.35 21.45 0.20 -49.54 16 8 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 C 0.10 4.74 4.26 71.98 0.31 5.05 16 13 O -0.35 -14.53 8.88 -51.41 -0.46 -14.99 16 14 C 0.44 15.88 7.65 71.23 0.54 16.43 16 15 O -0.53 -22.84 13.53 28.98 0.39 -22.45 16 16 C -0.08 -1.87 5.34 29.85 0.16 -1.71 16 17 C -0.07 -1.51 2.60 -11.93 -0.03 -1.54 16 18 H 0.13 2.98 7.96 -2.39 -0.02 2.96 16 19 C -0.15 -2.42 5.67 -19.70 -0.11 -2.53 16 20 C -0.06 -0.71 10.04 22.17 0.22 -0.49 16 21 C -0.14 -1.04 10.07 22.32 0.22 -0.82 16 22 C -0.08 -0.59 10.02 22.21 0.22 -0.36 16 23 C -0.14 -1.46 10.07 22.47 0.23 -1.23 16 24 C 0.13 2.03 7.11 38.35 0.27 2.31 16 25 N -0.66 -13.05 5.89 -302.83 -1.78 -14.83 16 26 C 0.52 14.74 7.85 87.89 0.69 15.43 16 27 O -0.52 -20.62 15.75 18.06 0.28 -20.34 16 28 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 29 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.03 1.53 7.68 -2.38 -0.02 1.51 16 31 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 32 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 1.58 7.68 -2.39 -0.02 1.57 16 34 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.05 2.33 8.13 -2.39 -0.02 2.31 16 36 H 0.04 1.90 8.13 -2.39 -0.02 1.88 16 37 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.16 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 41 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 43 H 0.42 6.57 8.96 -92.71 -0.83 5.74 16 Total: -1.00 -73.98 356.43 5.37 -68.61 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.20 Total: 12.40 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 4.50 Total: -4.63 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -1.58 Total: -64.37 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: 0.22 Total: -57.77 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.98 5.37 -68.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184774972.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.145 kcal (2) G-P(sol) polarization free energy of solvation -73.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds