Wall clock time and date at job start Tue Mar 31 2020 12:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 C 1.50699 * 109.47244 * 239.99770 * 2 1 3 5 5 H 1.07996 * 120.00313 * 241.35909 * 4 2 1 6 6 C 1.37875 * 119.99897 * 61.36644 * 4 2 1 7 7 N 1.31519 * 119.99968 * 193.96318 * 6 4 2 8 8 Si 1.86800 * 120.00228 * 13.95507 * 6 4 2 9 9 H 1.48506 * 109.46839 * 84.55918 * 8 6 4 10 10 H 1.48493 * 109.47221 * 204.56041 * 8 6 4 11 11 H 1.48498 * 109.46892 * 324.56439 * 8 6 4 12 12 C 1.53010 * 109.47033 * 119.99900 * 2 1 3 13 13 O 1.45192 * 109.46919 * 300.00082 * 12 2 1 14 14 C 1.34235 * 116.99902 * 180.02562 * 13 12 2 15 15 O 1.20827 * 119.99650 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00104 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.47245 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.45802 * 54.29332 * 17 16 14 19 19 C 1.51128 * 110.63048 * 176.98360 * 17 16 14 20 20 C 1.37678 * 132.84896 * 298.75179 * 19 17 16 21 21 C 1.38394 * 119.91597 * 179.97438 * 20 19 17 22 22 C 1.38302 * 119.82623 * 359.97438 * 21 20 19 23 23 C 1.37935 * 120.37411 * 359.97438 * 22 21 20 24 24 C 1.38896 * 106.34729 * 118.70032 * 19 17 16 25 25 N 1.39528 * 110.22682 * 0.02562 * 24 19 17 26 26 C 1.34370 * 112.25035 * 359.97438 * 25 24 19 27 27 O 1.21283 * 126.44892 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.47399 * 309.31533 * 1 2 3 29 29 H 1.09000 * 109.46976 * 69.31674 * 1 2 3 30 30 H 1.09002 * 109.46933 * 189.31259 * 1 2 3 31 31 H 1.09004 * 109.46698 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47089 * 299.99827 * 3 2 1 33 33 H 1.09000 * 109.47271 * 60.00071 * 3 2 1 34 34 H 0.97003 * 119.99750 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46870 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.47009 * 60.00089 * 12 2 1 37 37 H 1.09006 * 109.46967 * 59.99870 * 16 14 13 38 38 H 1.08994 * 109.47092 * 300.00353 * 16 14 13 39 39 H 1.08002 * 120.04724 * 359.97438 * 20 19 17 40 40 H 1.08003 * 120.09062 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.81464 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.93779 * 180.02562 * 23 22 21 43 43 H 0.97008 * 123.87834 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6350 -1.6011 -1.1315 6 6 1.7226 -0.2232 -2.4825 7 7 1.9163 -0.9723 -3.5460 8 14 1.0278 1.5007 -2.6683 9 1 2.1419 2.4818 -2.7081 10 1 0.2474 1.5867 -3.9287 11 1 0.1419 1.8042 -1.5158 12 6 2.0400 -0.7213 1.2493 13 8 1.5559 -0.0368 2.4348 14 6 1.9170 -0.5465 3.6229 15 8 2.6141 -1.5323 3.6706 16 6 1.4521 0.1100 4.8972 17 6 1.9992 -0.6635 6.0985 18 1 3.0827 -0.7590 6.0287 19 6 1.6096 0.0155 7.3913 20 6 1.8780 1.2611 7.9125 21 6 1.3734 1.6141 9.1519 22 6 0.6005 0.7134 9.8619 23 6 0.3292 -0.5349 9.3415 24 6 0.8346 -0.8979 8.0944 25 7 0.7034 -2.0808 7.3662 26 6 1.3515 -2.0289 6.1903 27 8 1.4071 -2.9100 5.3586 28 1 -0.3634 0.6511 0.7950 29 1 -0.3633 0.3630 -0.9614 30 1 -0.3633 -1.0141 0.1663 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6981 -0.6296 -4.4268 35 1 3.1299 -0.7209 1.2495 36 1 1.6766 -1.7489 1.2493 37 1 0.3625 0.1085 4.9301 38 1 1.8151 1.1372 4.9301 39 1 2.4816 1.9620 7.3550 40 1 1.5819 2.5907 9.5633 41 1 0.2065 0.9892 10.8288 42 1 -0.2755 -1.2326 9.9017 43 1 0.2013 -2.8520 7.6732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184774991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:43 Heat of formation + Delta-G solvation = -70.840931 kcal Electronic energy + Delta-G solvation = -26285.128533 eV Core-core repulsion = 22489.303825 eV Total energy + Delta-G solvation = -3795.824708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94583 -39.88710 -38.60510 -36.85252 -35.89635 -35.01059 -33.84617 -31.70949 -30.67888 -29.48524 -27.15343 -26.26351 -25.67125 -24.81550 -22.98052 -21.85400 -21.59470 -20.10882 -19.08507 -18.20280 -17.55256 -16.93889 -16.47639 -16.17422 -15.93707 -15.80694 -15.37021 -15.07605 -14.88333 -14.43696 -14.19997 -13.51692 -13.39606 -13.26953 -13.11465 -12.88218 -12.67450 -12.38288 -12.21878 -12.11108 -11.94665 -11.84667 -11.50683 -11.29457 -11.13175 -10.48461 -10.31387 -10.21984 -10.16734 -10.04014 -9.91155 -9.67249 -9.30377 -9.07188 -8.62420 -8.44227 -8.38596 -6.13281 -4.11289 0.78821 0.90299 2.27209 2.61601 2.70507 3.08594 3.28874 3.37220 3.40163 3.42174 3.78892 4.07201 4.38907 4.41174 4.52197 4.62946 4.85283 4.90334 5.00313 5.16875 5.19336 5.23613 5.34363 5.50694 5.54727 5.71120 5.84233 5.96818 5.97204 6.08206 6.18909 6.26262 6.32563 6.50461 6.55990 6.62504 6.65149 6.74026 6.80338 6.91978 7.13103 7.25570 7.48028 7.73681 7.80130 8.23650 8.45307 8.89875 9.50215 10.99560 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.002809 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.566221 B = 9966.780794 C =10558.886422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 C -0.145 4.145 4 C -0.518 4.518 5 H 0.076 0.924 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.246 1.246 12 C 0.095 3.905 13 O -0.356 6.356 14 C 0.444 3.556 15 O -0.489 6.489 16 C -0.091 4.091 17 C -0.070 4.070 18 H 0.133 0.867 19 C -0.140 4.140 20 C -0.060 4.060 21 C -0.144 4.144 22 C -0.083 4.083 23 C -0.143 4.143 24 C 0.152 3.848 25 N -0.667 5.667 26 C 0.526 3.474 27 O -0.461 6.461 28 H 0.031 0.969 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 6.660 28.963 29.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.042 3.958 3 C -0.202 4.202 4 C -0.555 4.555 5 H 0.094 0.906 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.212 1.212 10 H -0.234 1.234 11 H -0.172 1.172 12 C 0.022 3.978 13 O -0.273 6.273 14 C 0.285 3.715 15 O -0.376 6.376 16 C -0.130 4.130 17 C -0.091 4.091 18 H 0.151 0.849 19 C -0.143 4.143 20 C -0.079 4.079 21 C -0.163 4.163 22 C -0.102 4.102 23 C -0.165 4.165 24 C 0.054 3.946 25 N -0.311 5.311 26 C 0.312 3.688 27 O -0.330 6.330 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.246 5.813 28.099 28.877 hybrid contribution -0.474 0.346 -0.085 0.593 sum -3.720 6.159 28.014 28.924 Atomic orbital electron populations 1.22222 0.97455 0.99883 1.00121 1.18584 0.93095 0.92561 0.91563 1.22287 1.00660 0.98181 0.99088 1.20681 1.34443 1.12418 0.87999 0.90627 1.24922 0.94549 0.97457 0.95602 1.69953 1.48108 1.35959 0.98724 0.87279 0.79512 0.85354 0.76076 1.21247 1.23369 1.17192 1.23381 0.98529 0.95810 0.80050 1.86445 1.69726 1.56098 1.14998 1.23224 0.78919 0.83086 0.86241 1.90738 1.34666 1.24213 1.87934 1.21060 1.03554 1.00743 0.87594 1.20496 1.03807 0.92479 0.92317 0.84928 1.19732 1.02766 0.95522 0.96276 1.20345 0.98198 0.94014 0.95293 1.21079 0.99929 1.00241 0.95024 1.20901 0.97112 0.92515 0.99626 1.20377 1.04024 0.98183 0.93878 1.18189 0.96888 0.86313 0.93200 1.43871 1.52033 1.15771 1.19473 1.20489 0.78321 0.89556 0.80460 1.90931 1.58085 1.42672 1.41278 0.94974 0.92746 0.93820 0.93196 0.94225 0.94095 0.92493 0.91854 0.91705 0.87613 0.86380 0.85078 0.85234 0.85235 0.85623 0.74956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 7.58 37.15 0.28 -2.84 16 2 C 0.04 1.01 0.58 -155.66 -0.09 0.92 16 3 C -0.15 -3.18 7.55 37.16 0.28 -2.90 16 4 C -0.52 -14.50 8.62 -34.44 -0.30 -14.79 16 5 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 6 C 0.08 2.22 5.32 -17.82 -0.09 2.12 16 7 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 8 Si 0.89 21.75 22.79 -169.99 -3.87 17.88 16 9 H -0.28 -6.91 7.10 56.52 0.40 -6.51 16 10 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 11 H -0.25 -5.59 4.65 56.52 0.26 -5.33 16 12 C 0.09 2.07 4.25 37.16 0.16 2.23 16 13 O -0.36 -6.71 9.06 -39.27 -0.36 -7.06 16 14 C 0.44 7.49 7.65 36.01 0.28 7.76 16 15 O -0.49 -9.78 13.53 -26.09 -0.35 -10.14 16 16 C -0.09 -1.04 5.34 -27.88 -0.15 -1.19 16 17 C -0.07 -0.76 2.60 -92.37 -0.24 -1.00 16 18 H 0.13 1.47 7.96 -51.93 -0.41 1.05 16 19 C -0.14 -1.21 5.68 -104.37 -0.59 -1.80 16 20 C -0.06 -0.40 10.04 -39.73 -0.40 -0.80 16 21 C -0.14 -0.80 10.07 -39.50 -0.40 -1.19 16 22 C -0.08 -0.45 10.01 -39.67 -0.40 -0.84 16 23 C -0.14 -0.91 10.07 -39.27 -0.40 -1.31 16 24 C 0.15 1.28 7.11 -83.69 -0.60 0.69 16 25 N -0.67 -6.37 5.88 -9.70 -0.06 -6.43 16 26 C 0.53 6.97 7.83 -10.82 -0.08 6.88 16 27 O -0.46 -8.29 15.75 -16.52 -0.26 -8.55 16 28 H 0.03 0.64 7.94 -51.93 -0.41 0.23 16 29 H 0.05 1.26 4.30 -51.93 -0.22 1.03 16 30 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 33 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 34 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 36 H 0.06 1.49 8.13 -51.93 -0.42 1.06 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 41 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.41 3.05 8.96 -40.82 -0.37 2.68 16 LS Contribution 346.56 15.07 5.22 5.22 Total: -1.00 -35.00 346.56 -7.49 -42.49 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.85 Total: 1.07 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -2.74 Total: -8.07 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.72 Total: -32.85 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.97 Total: -25.75 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -3.87 Total: 17.88 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.00 -7.49 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184774991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.351 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds