Wall clock time and date at job start Tue Mar 31 2020 12:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 C 1.50699 * 109.47244 * 239.99770 * 2 1 3 5 5 H 1.07996 * 120.00313 * 241.35909 * 4 2 1 6 6 C 1.37875 * 119.99897 * 61.36644 * 4 2 1 7 7 N 1.31519 * 119.99968 * 193.96318 * 6 4 2 8 8 Si 1.86800 * 120.00228 * 13.95507 * 6 4 2 9 9 H 1.48506 * 109.46839 * 84.55918 * 8 6 4 10 10 H 1.48493 * 109.47221 * 204.56041 * 8 6 4 11 11 H 1.48498 * 109.46892 * 324.56439 * 8 6 4 12 12 C 1.53010 * 109.47033 * 119.99900 * 2 1 3 13 13 O 1.45192 * 109.46919 * 300.00082 * 12 2 1 14 14 C 1.34235 * 116.99902 * 180.02562 * 13 12 2 15 15 O 1.20827 * 119.99650 * 359.97438 * 14 13 12 16 16 C 1.50701 * 120.00104 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.47245 * 179.97438 * 16 14 13 18 18 H 1.08996 * 110.45802 * 54.29332 * 17 16 14 19 19 C 1.51128 * 110.63048 * 176.98360 * 17 16 14 20 20 C 1.37678 * 132.84896 * 298.75179 * 19 17 16 21 21 C 1.38394 * 119.91597 * 179.97438 * 20 19 17 22 22 C 1.38302 * 119.82623 * 359.97438 * 21 20 19 23 23 C 1.37935 * 120.37411 * 359.97438 * 22 21 20 24 24 C 1.38896 * 106.34729 * 118.70032 * 19 17 16 25 25 N 1.39528 * 110.22682 * 0.02562 * 24 19 17 26 26 C 1.34370 * 112.25035 * 359.97438 * 25 24 19 27 27 O 1.21283 * 126.44892 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.47399 * 309.31533 * 1 2 3 29 29 H 1.09000 * 109.46976 * 69.31674 * 1 2 3 30 30 H 1.09002 * 109.46933 * 189.31259 * 1 2 3 31 31 H 1.09004 * 109.46698 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47089 * 299.99827 * 3 2 1 33 33 H 1.09000 * 109.47271 * 60.00071 * 3 2 1 34 34 H 0.97003 * 119.99750 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46870 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.47009 * 60.00089 * 12 2 1 37 37 H 1.09006 * 109.46967 * 59.99870 * 16 14 13 38 38 H 1.08994 * 109.47092 * 300.00353 * 16 14 13 39 39 H 1.08002 * 120.04724 * 359.97438 * 20 19 17 40 40 H 1.08003 * 120.09062 * 180.02562 * 21 20 19 41 41 H 1.07998 * 119.81464 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.93779 * 180.02562 * 23 22 21 43 43 H 0.97008 * 123.87834 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6350 -1.6011 -1.1315 6 6 1.7226 -0.2232 -2.4825 7 7 1.9163 -0.9723 -3.5460 8 14 1.0278 1.5007 -2.6683 9 1 2.1419 2.4818 -2.7081 10 1 0.2474 1.5867 -3.9287 11 1 0.1419 1.8042 -1.5158 12 6 2.0400 -0.7213 1.2493 13 8 1.5559 -0.0368 2.4348 14 6 1.9170 -0.5465 3.6229 15 8 2.6141 -1.5323 3.6706 16 6 1.4521 0.1100 4.8972 17 6 1.9992 -0.6635 6.0985 18 1 3.0827 -0.7590 6.0287 19 6 1.6096 0.0155 7.3913 20 6 1.8780 1.2611 7.9125 21 6 1.3734 1.6141 9.1519 22 6 0.6005 0.7134 9.8619 23 6 0.3292 -0.5349 9.3415 24 6 0.8346 -0.8979 8.0944 25 7 0.7034 -2.0808 7.3662 26 6 1.3515 -2.0289 6.1903 27 8 1.4071 -2.9100 5.3586 28 1 -0.3634 0.6511 0.7950 29 1 -0.3633 0.3630 -0.9614 30 1 -0.3633 -1.0141 0.1663 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6981 -0.6296 -4.4268 35 1 3.1299 -0.7209 1.2495 36 1 1.6766 -1.7489 1.2493 37 1 0.3625 0.1085 4.9301 38 1 1.8151 1.1372 4.9301 39 1 2.4816 1.9620 7.3550 40 1 1.5819 2.5907 9.5633 41 1 0.2065 0.9892 10.8288 42 1 -0.2755 -1.2326 9.9017 43 1 0.2013 -2.8520 7.6732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184774991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:42 Heat of formation + Delta-G solvation = -93.752090 kcal Electronic energy + Delta-G solvation = -26286.122035 eV Core-core repulsion = 22489.303825 eV Total energy + Delta-G solvation = -3796.818210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.74096 -41.28332 -39.42663 -38.52839 -36.70084 -36.67083 -34.70611 -33.85396 -31.30447 -30.12878 -28.41701 -28.00629 -27.18010 -26.74824 -23.53690 -22.80918 -22.40391 -21.22394 -20.93574 -18.97556 -18.69457 -18.04838 -17.92751 -17.66943 -17.27436 -17.11525 -16.70962 -16.35884 -15.70285 -15.22566 -14.99788 -14.94235 -14.78576 -14.66915 -14.21794 -14.03483 -13.96505 -13.74847 -13.72648 -13.53137 -13.22153 -13.04291 -12.61864 -12.42830 -12.23344 -11.99310 -11.86635 -11.84237 -11.80854 -11.49101 -11.43573 -11.10684 -11.05710 -10.63761 -10.41837 -9.79638 -9.00422 -8.34601 -6.37878 0.19118 0.43114 1.29078 1.36507 1.37788 1.39688 1.50810 1.76547 1.96807 2.32804 2.88700 3.01103 3.02468 3.26269 3.60467 3.85256 3.97584 4.04450 4.11058 4.13775 4.24725 4.39440 4.44166 4.48606 4.54581 4.62182 4.66104 4.79085 4.80365 4.83096 4.93224 5.09678 5.09877 5.15326 5.18566 5.42677 5.51193 5.59574 5.62387 5.67602 5.68189 5.73103 5.80482 6.11109 6.24136 6.65004 6.81603 6.93907 7.27405 8.82436 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026825 B = 0.002809 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.566221 B = 9966.780794 C =10558.886422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.039 3.961 3 C -0.143 4.143 4 C -0.526 4.526 5 H 0.027 0.973 6 C 0.020 3.980 7 N -0.943 5.943 8 Si 0.946 3.054 9 H -0.275 1.275 10 H -0.310 1.310 11 H -0.208 1.208 12 C 0.108 3.892 13 O -0.350 6.350 14 C 0.438 3.562 15 O -0.525 6.525 16 C -0.079 4.079 17 C -0.067 4.067 18 H 0.126 0.874 19 C -0.147 4.147 20 C -0.064 4.064 21 C -0.137 4.137 22 C -0.082 4.082 23 C -0.141 4.141 24 C 0.125 3.875 25 N -0.656 5.656 26 C 0.515 3.485 27 O -0.526 6.526 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.267 0.733 35 H 0.052 0.948 36 H 0.039 0.961 37 H 0.121 0.879 38 H 0.159 0.841 39 H 0.151 0.849 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.143 0.857 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 10.893 32.637 34.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.038 3.962 3 C -0.199 4.199 4 C -0.564 4.564 5 H 0.045 0.955 6 C -0.178 4.178 7 N -0.582 5.582 8 Si 0.775 3.225 9 H -0.202 1.202 10 H -0.239 1.239 11 H -0.132 1.132 12 C 0.034 3.966 13 O -0.267 6.267 14 C 0.282 3.718 15 O -0.414 6.414 16 C -0.116 4.116 17 C -0.088 4.088 18 H 0.143 0.857 19 C -0.150 4.150 20 C -0.082 4.082 21 C -0.156 4.156 22 C -0.100 4.100 23 C -0.161 4.161 24 C 0.029 3.971 25 N -0.300 5.300 26 C 0.303 3.697 27 O -0.400 6.400 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.139 0.861 38 H 0.177 0.823 39 H 0.169 0.831 40 H 0.174 0.826 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.760 10.083 31.872 33.766 hybrid contribution 0.039 -1.051 -1.016 1.463 sum -4.721 9.032 30.856 32.496 Atomic orbital electron populations 1.22163 0.96113 1.00278 1.00897 1.18523 0.94073 0.93633 0.89993 1.22219 1.00780 0.96416 1.00513 1.20949 1.33646 1.11288 0.90522 0.95464 1.25835 0.95100 1.01884 0.94934 1.70104 1.50296 1.38348 0.99474 0.86283 0.79659 0.79632 0.76967 1.20197 1.23941 1.13239 1.22881 0.97693 0.94623 0.81398 1.86428 1.69785 1.55618 1.14864 1.24417 0.77900 0.82674 0.86843 1.90741 1.36439 1.25979 1.88198 1.21227 1.04350 1.02009 0.84024 1.20415 1.03159 0.91556 0.93670 0.85653 1.19633 1.03701 0.96560 0.95067 1.20636 0.98224 0.93356 0.95956 1.21478 0.98574 1.01277 0.94246 1.21316 0.96347 0.91756 1.00600 1.20688 1.03465 0.99064 0.92919 1.18441 0.98561 0.85759 0.94357 1.43728 1.51020 1.16700 1.18559 1.20922 0.78284 0.89877 0.80636 1.90891 1.60756 1.44747 1.43617 0.91686 0.93335 0.94685 0.93309 0.94531 0.90603 0.92384 0.92933 0.94259 0.86120 0.82308 0.83140 0.82599 0.82451 0.83889 0.74145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 7.58 71.98 0.55 -5.36 16 2 C 0.04 1.80 0.58 -52.93 -0.03 1.77 16 3 C -0.14 -5.83 7.55 71.98 0.54 -5.29 16 4 C -0.53 -30.57 8.62 25.60 0.22 -30.35 16 5 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 6 C 0.02 1.19 5.32 84.65 0.45 1.64 16 7 N -0.94 -59.85 13.96 21.45 0.30 -59.55 16 8 Si 0.95 44.13 22.79 68.60 1.56 45.69 16 9 H -0.28 -12.36 7.10 99.48 0.71 -11.66 16 10 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 11 H -0.21 -8.48 4.65 99.48 0.46 -8.01 16 12 C 0.11 4.80 4.25 71.99 0.31 5.10 16 13 O -0.35 -12.77 9.06 -51.46 -0.47 -13.24 16 14 C 0.44 14.59 7.65 71.24 0.54 15.13 16 15 O -0.53 -21.86 13.53 28.98 0.39 -21.47 16 16 C -0.08 -1.61 5.34 29.85 0.16 -1.45 16 17 C -0.07 -1.40 2.60 -11.93 -0.03 -1.43 16 18 H 0.13 2.77 7.96 -2.39 -0.02 2.75 16 19 C -0.15 -2.16 5.68 -19.70 -0.11 -2.27 16 20 C -0.06 -0.59 10.04 22.17 0.22 -0.37 16 21 C -0.14 -0.86 10.07 22.32 0.22 -0.63 16 22 C -0.08 -0.51 10.01 22.21 0.22 -0.28 16 23 C -0.14 -1.33 10.07 22.47 0.23 -1.10 16 24 C 0.13 1.86 7.11 38.35 0.27 2.13 16 25 N -0.66 -12.33 5.88 -303.21 -1.78 -14.11 16 26 C 0.52 14.02 7.83 87.94 0.69 14.70 16 27 O -0.53 -20.17 15.75 18.06 0.28 -19.89 16 28 H 0.06 2.36 7.94 -2.39 -0.02 2.34 16 29 H 0.05 2.12 4.30 -2.39 -0.01 2.11 16 30 H 0.03 1.52 8.12 -2.39 -0.02 1.50 16 31 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.04 1.52 2.25 -2.39 -0.01 1.51 16 33 H 0.08 2.57 7.68 -2.39 -0.02 2.55 16 34 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 35 H 0.05 2.41 8.13 -2.39 -0.02 2.39 16 36 H 0.04 1.91 8.13 -2.39 -0.02 1.89 16 37 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.15 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 41 H 0.16 0.11 8.06 -2.91 -0.02 0.09 16 42 H 0.14 0.79 8.06 -2.91 -0.02 0.77 16 43 H 0.42 6.23 8.96 -92.70 -0.83 5.40 16 Total: -1.00 -81.87 346.56 4.71 -77.16 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -0.03 Total: 13.45 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.45 Total: -8.04 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -1.48 Total: -73.67 kcal Atomic # 8 Polarization: -54.80 SS G_CDS: 0.21 Total: -54.59 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.56 Total: 45.69 kcal Total: -81.87 4.71 -77.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184774991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.596 kcal (2) G-P(sol) polarization free energy of solvation -81.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds