Wall clock time and date at job start Tue Mar 31 2020 11:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46840 * 2 1 4 4 C 1.53000 * 109.47042 * 240.00043 * 2 1 3 5 5 C 1.47211 * 109.47083 * 59.99906 * 4 2 1 6 6 N 3.43551 * 83.99442 * 278.55483 * 2 1 3 7 7 C 1.52998 * 109.47343 * 120.00196 * 2 1 3 8 8 O 1.45203 * 109.47097 * 299.99753 * 7 2 1 9 9 C 1.34225 * 117.00065 * 179.97438 * 8 7 2 10 10 O 1.20830 * 120.00117 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00089 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.08999 * 109.47137 * 299.99478 * 1 2 3 28 28 H 1.08997 * 109.47464 * 60.00403 * 1 2 3 29 29 H 1.09005 * 109.46628 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47004 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47406 * 300.00342 * 3 2 1 32 32 H 1.08999 * 109.46829 * 60.00333 * 3 2 1 33 33 H 1.08998 * 109.47108 * 179.97438 * 4 2 1 34 34 H 1.08993 * 109.47254 * 300.00183 * 4 2 1 35 35 H 1.09005 * 109.47055 * 180.02562 * 7 2 1 36 36 H 1.08992 * 109.47430 * 59.99967 * 7 2 1 37 37 H 1.08998 * 109.46621 * 60.00590 * 11 9 8 38 38 H 1.08996 * 109.47266 * 300.00254 * 11 9 8 39 39 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5493 -0.0273 -2.4512 6 7 1.1706 0.5082 -3.3786 7 6 2.0401 -0.7213 1.2492 8 8 1.5561 -0.0368 2.4348 9 6 1.9164 -0.5472 3.6228 10 8 2.6135 -1.5330 3.6705 11 6 1.4515 0.1093 4.8972 12 6 1.9905 -0.6526 6.0803 13 6 3.2156 -0.3092 6.6224 14 6 3.7120 -1.0052 7.7070 15 6 2.9798 -2.0514 8.2530 16 8 3.4649 -2.7371 9.3195 17 6 4.6067 -2.2808 9.8726 18 1 5.1362 -1.4574 9.4168 19 6 5.1012 -2.8691 11.0268 20 7 4.4560 -3.8719 11.5824 21 14 6.6827 -2.2365 11.7936 22 1 6.3647 -1.1662 12.7726 23 1 7.3770 -3.3512 12.4870 24 1 7.5639 -1.6893 10.7309 25 6 1.7528 -2.3980 7.7026 26 6 1.2592 -1.6944 6.6215 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6767 -1.7488 -1.2493 35 1 3.1301 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.3620 0.1085 4.9297 38 1 1.8152 1.1363 4.9305 39 1 3.7843 0.5047 6.1976 40 1 4.6685 -0.7362 8.1300 41 1 4.8021 -4.2837 12.3896 42 1 1.1832 -3.2139 8.1222 43 1 0.3031 -1.9605 6.1958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184783292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:21 Heat of formation + Delta-G solvation = -77.127513 kcal Electronic energy + Delta-G solvation = -24961.238242 eV Core-core repulsion = 21165.140928 eV Total energy + Delta-G solvation = -3796.097315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.61381 -39.12470 -38.60801 -36.94028 -36.32507 -35.41563 -32.53821 -31.54024 -30.19776 -29.01160 -27.77575 -27.73489 -26.40071 -25.13648 -22.02860 -21.83453 -20.23323 -20.06738 -18.02140 -17.88923 -17.36810 -17.03790 -16.61211 -16.20723 -15.47945 -15.26525 -14.77956 -14.64409 -14.39462 -14.11030 -14.05017 -13.60343 -13.53194 -13.14065 -13.04506 -12.99202 -12.75461 -12.71893 -12.52877 -12.30787 -11.95761 -11.90697 -11.57552 -11.45787 -11.36969 -11.30448 -11.18577 -10.91565 -10.81085 -10.68521 -10.65708 -10.44841 -10.30399 -9.36167 -8.85182 -8.19659 -7.22539 -6.47230 -4.05804 2.03696 2.21327 2.30259 2.34476 2.37685 2.80598 3.12179 3.12652 3.17413 3.52633 3.95043 4.17385 4.20170 4.33677 4.54245 4.70761 4.85483 4.92134 5.02340 5.08067 5.10258 5.17654 5.22063 5.26498 5.30187 5.30621 5.48393 5.51974 5.54926 5.61503 5.68659 5.80453 5.86276 5.88761 6.18103 6.37237 6.40590 6.66859 6.87432 7.02115 7.13933 7.19527 7.31576 7.41568 7.78831 7.88421 7.97806 8.98286 9.67909 10.70615 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032211 B = 0.002020 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.064392 B =13857.451226 C =14149.819255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.147 4.147 4 C -0.022 4.022 5 C 0.214 3.786 6 N -0.436 5.436 7 C 0.077 3.923 8 O -0.358 6.358 9 C 0.455 3.545 10 O -0.490 6.490 11 C -0.050 4.050 12 C -0.184 4.184 13 C -0.053 4.053 14 C -0.234 4.234 15 C 0.159 3.841 16 O -0.176 6.176 17 C -0.392 4.392 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.192 4.192 26 C -0.056 4.056 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.270 0.730 42 H 0.118 0.882 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.605 8.479 -19.821 22.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.059 4.059 3 C -0.204 4.204 4 C -0.062 4.062 5 C -0.103 4.103 6 N -0.113 5.113 7 C 0.002 3.998 8 O -0.276 6.276 9 C 0.297 3.703 10 O -0.376 6.376 11 C -0.087 4.087 12 C -0.185 4.185 13 C -0.071 4.071 14 C -0.253 4.253 15 C 0.105 3.895 16 O -0.079 6.079 17 C -0.468 4.468 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.211 4.211 26 C -0.075 4.075 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.136 0.864 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.987 8.593 -20.898 23.376 hybrid contribution 1.126 -0.060 0.629 1.291 sum -4.860 8.533 -20.269 22.523 Atomic orbital electron populations 1.21933 0.92911 1.02654 1.02884 1.20550 0.97442 0.96544 0.91364 1.21932 1.01349 0.94224 1.02885 1.19346 1.02673 0.98934 0.85219 1.28875 0.93472 0.93756 0.94246 1.81259 1.09097 1.09286 1.11664 1.22910 0.99445 0.95687 0.81723 1.86475 1.70382 1.55988 1.14760 1.24220 0.77926 0.83143 0.84988 1.90715 1.34392 1.25049 1.87406 1.20088 1.02460 0.99651 0.86510 1.18630 0.98092 1.02198 0.99593 1.20530 0.93947 0.97829 0.94828 1.21112 1.02613 1.00745 1.00810 1.19411 0.91923 0.89961 0.88200 1.83976 1.38900 1.47402 1.37590 1.21342 0.98857 1.18118 1.08489 0.88996 1.25304 0.99544 0.96020 0.95661 1.70037 1.38576 1.21347 1.19627 0.85703 0.79951 0.78429 0.79301 1.19852 1.20246 1.19176 1.20162 0.96027 1.04348 1.00611 1.20421 0.98205 0.94018 0.94821 0.90776 0.92633 0.92012 0.92018 0.92637 0.90772 0.86761 0.86752 0.90698 0.90682 0.87802 0.87848 0.87644 0.85471 0.91977 0.86420 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.08 37.16 0.30 -0.55 16 2 C -0.06 -0.31 0.63 -154.51 -0.10 -0.41 16 3 C -0.15 -0.86 8.08 37.16 0.30 -0.56 16 4 C -0.02 -0.08 4.79 -29.51 -0.14 -0.22 16 5 C 0.21 1.50 12.89 -20.76 -0.27 1.23 16 6 N -0.44 -4.48 18.54 42.15 0.78 -3.70 16 7 C 0.08 0.56 4.32 37.16 0.16 0.72 16 8 O -0.36 -3.46 8.88 -39.24 -0.35 -3.80 16 9 C 0.46 5.70 7.95 36.01 0.29 5.99 16 10 O -0.49 -8.06 15.78 -18.75 -0.30 -8.36 16 11 C -0.05 -0.57 5.94 -29.04 -0.17 -0.75 16 12 C -0.18 -2.99 4.38 -104.58 -0.46 -3.45 16 13 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 14 C -0.23 -5.03 9.17 -39.39 -0.36 -5.39 16 15 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 16 O -0.18 -4.99 9.76 0.05 0.00 -4.99 16 17 C -0.39 -10.87 9.49 30.89 0.29 -10.58 16 18 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -25.06 13.67 55.48 0.76 -24.31 16 21 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 25 C -0.19 -4.03 9.99 -39.39 -0.39 -4.42 16 26 C -0.06 -0.98 9.69 -39.61 -0.38 -1.36 16 27 H 0.07 0.48 7.68 -51.93 -0.40 0.08 16 28 H 0.05 0.35 7.23 -51.93 -0.38 -0.02 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.36 7.23 -51.93 -0.38 -0.02 16 32 H 0.07 0.49 7.68 -51.93 -0.40 0.09 16 33 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 36 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 37 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 41 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -34.19 372.86 -6.08 -40.27 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.90 Total: 0.52 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -1.67 Total: -16.54 kcal Atomic # 7 Polarization: -29.54 SS G_CDS: 1.54 Total: -28.00 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.64 Total: -17.15 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.19 -6.08 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184783292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.862 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds