Wall clock time and date at job start Tue Mar 31 2020 11:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46840 * 2 1 4 4 C 1.53000 * 109.47042 * 240.00043 * 2 1 3 5 5 C 1.47211 * 109.47083 * 59.99906 * 4 2 1 6 6 N 3.43551 * 83.99442 * 278.55483 * 2 1 3 7 7 C 1.52998 * 109.47343 * 120.00196 * 2 1 3 8 8 O 1.45203 * 109.47097 * 299.99753 * 7 2 1 9 9 C 1.34225 * 117.00065 * 179.97438 * 8 7 2 10 10 O 1.20830 * 120.00117 * 0.02562 * 9 8 7 11 11 C 1.50705 * 120.00089 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.08999 * 109.47137 * 299.99478 * 1 2 3 28 28 H 1.08997 * 109.47464 * 60.00403 * 1 2 3 29 29 H 1.09005 * 109.46628 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47004 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47406 * 300.00342 * 3 2 1 32 32 H 1.08999 * 109.46829 * 60.00333 * 3 2 1 33 33 H 1.08998 * 109.47108 * 179.97438 * 4 2 1 34 34 H 1.08993 * 109.47254 * 300.00183 * 4 2 1 35 35 H 1.09005 * 109.47055 * 180.02562 * 7 2 1 36 36 H 1.08992 * 109.47430 * 59.99967 * 7 2 1 37 37 H 1.08998 * 109.46621 * 60.00590 * 11 9 8 38 38 H 1.08996 * 109.47266 * 300.00254 * 11 9 8 39 39 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 40 40 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 41 41 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 43 43 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5493 -0.0273 -2.4512 6 7 1.1706 0.5082 -3.3786 7 6 2.0401 -0.7213 1.2492 8 8 1.5561 -0.0368 2.4348 9 6 1.9164 -0.5472 3.6228 10 8 2.6135 -1.5330 3.6705 11 6 1.4515 0.1093 4.8972 12 6 1.9905 -0.6526 6.0803 13 6 3.2156 -0.3092 6.6224 14 6 3.7120 -1.0052 7.7070 15 6 2.9798 -2.0514 8.2530 16 8 3.4649 -2.7371 9.3195 17 6 4.6067 -2.2808 9.8726 18 1 5.1362 -1.4574 9.4168 19 6 5.1012 -2.8691 11.0268 20 7 4.4560 -3.8719 11.5824 21 14 6.6827 -2.2365 11.7936 22 1 6.3647 -1.1662 12.7726 23 1 7.3770 -3.3512 12.4870 24 1 7.5639 -1.6893 10.7309 25 6 1.7528 -2.3980 7.7026 26 6 1.2592 -1.6944 6.6215 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7209 -1.2495 34 1 1.6767 -1.7488 -1.2493 35 1 3.1301 -0.7208 1.2494 36 1 1.6768 -1.7489 1.2492 37 1 0.3620 0.1085 4.9297 38 1 1.8152 1.1363 4.9305 39 1 3.7843 0.5047 6.1976 40 1 4.6685 -0.7362 8.1300 41 1 4.8021 -4.2837 12.3896 42 1 1.1832 -3.2139 8.1222 43 1 0.3031 -1.9605 6.1958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184783292.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:20 Heat of formation + Delta-G solvation = -97.031800 kcal Electronic energy + Delta-G solvation = -24962.101357 eV Core-core repulsion = 21165.140928 eV Total energy + Delta-G solvation = -3796.960429 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54327 -40.66700 -39.34591 -38.32854 -37.33478 -36.13100 -34.39239 -32.95498 -31.76208 -29.48106 -28.77318 -28.18910 -27.63057 -26.79674 -23.62267 -23.04996 -21.48280 -20.64861 -19.83054 -18.83507 -18.63127 -17.96271 -17.45645 -17.12410 -16.39108 -16.29456 -15.91358 -15.87948 -15.82826 -15.46844 -15.12334 -14.80914 -14.66373 -14.39733 -14.14156 -13.78926 -13.64963 -13.59018 -13.48146 -13.45810 -12.95169 -12.88289 -12.73852 -12.47166 -12.36388 -12.31109 -12.26423 -12.10539 -11.92647 -11.86000 -11.66871 -11.36451 -11.34619 -11.16169 -10.77324 -9.74534 -8.91468 -8.45967 -6.14010 0.62780 0.63933 1.36037 1.39824 1.44618 1.53558 1.63650 1.85724 2.01152 2.18990 2.85150 3.04148 3.21268 3.53589 3.74336 3.75592 3.81840 3.90411 4.07311 4.19788 4.22535 4.35565 4.46034 4.50653 4.59470 4.62654 4.75691 4.77079 4.78332 4.82930 4.85312 5.02854 5.06195 5.07513 5.11012 5.16559 5.31853 5.41232 5.41954 5.55795 5.60012 5.73750 5.77419 6.04460 6.24889 6.63371 6.96334 6.98748 7.79862 8.77284 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032211 B = 0.002020 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.064392 B =13857.451226 C =14149.819255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C -0.147 4.147 4 C -0.021 4.021 5 C 0.241 3.759 6 N -0.499 5.499 7 C 0.072 3.928 8 O -0.349 6.349 9 C 0.465 3.535 10 O -0.536 6.536 11 C -0.051 4.051 12 C -0.156 4.156 13 C -0.056 4.056 14 C -0.246 4.246 15 C 0.115 3.885 16 O -0.233 6.233 17 C -0.413 4.413 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.253 1.253 25 C -0.208 4.208 26 C -0.053 4.053 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.272 0.728 42 H 0.112 0.888 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.746 10.455 -22.121 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.049 4.049 3 C -0.204 4.204 4 C -0.061 4.061 5 C -0.075 4.075 6 N -0.177 5.177 7 C -0.002 4.002 8 O -0.265 6.265 9 C 0.309 3.691 10 O -0.425 6.425 11 C -0.088 4.088 12 C -0.157 4.157 13 C -0.073 4.073 14 C -0.265 4.265 15 C 0.064 3.936 16 O -0.140 6.140 17 C -0.489 4.489 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.187 1.187 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.227 4.227 26 C -0.071 4.071 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.160 0.840 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.131 0.869 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.169 10.622 -23.269 26.312 hybrid contribution 0.934 -0.526 0.990 1.459 sum -5.235 10.097 -22.279 25.014 Atomic orbital electron populations 1.21937 0.93269 1.03042 1.02171 1.20454 0.97035 0.96193 0.91228 1.21937 1.01911 0.94419 1.02169 1.19606 1.04249 0.99491 0.82710 1.29406 0.91791 0.92345 0.93969 1.81289 1.11283 1.11352 1.13786 1.23137 0.99897 0.96039 0.81108 1.86454 1.69809 1.55649 1.14637 1.24164 0.76832 0.82180 0.85924 1.90731 1.36617 1.27097 1.88083 1.20214 1.04581 1.00200 0.83772 1.19211 0.96469 1.00377 0.99625 1.20967 0.94862 0.98095 0.93423 1.21239 1.02360 1.00777 1.02103 1.19987 0.93683 0.91566 0.88325 1.83939 1.40037 1.49886 1.40117 1.21825 0.99311 1.18642 1.09150 0.88094 1.26606 1.03488 0.96140 0.95914 1.70185 1.41224 1.23710 1.20770 0.84580 0.75065 0.78023 0.78498 1.18690 1.19658 1.17688 1.20452 0.95350 1.05016 1.01869 1.20911 0.99698 0.93289 0.93183 0.91389 0.93481 0.91096 0.91150 0.93476 0.91399 0.84141 0.84095 0.90201 0.90112 0.84239 0.84490 0.84035 0.86432 0.91861 0.86950 0.83206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.08 71.98 0.58 -0.72 16 2 C -0.05 -0.35 0.63 -52.18 -0.03 -0.38 16 3 C -0.15 -1.32 8.08 71.98 0.58 -0.74 16 4 C -0.02 -0.08 4.79 28.79 0.14 0.06 16 5 C 0.24 2.89 12.89 89.45 1.15 4.04 16 6 N -0.50 -9.84 18.54 20.01 0.37 -9.47 16 7 C 0.07 0.77 4.32 71.98 0.31 1.09 16 8 O -0.35 -5.20 8.88 -51.37 -0.46 -5.65 16 9 C 0.46 9.54 7.95 71.24 0.57 10.11 16 10 O -0.54 -15.84 15.78 21.95 0.35 -15.50 16 11 C -0.05 -0.88 5.94 29.10 0.17 -0.71 16 12 C -0.16 -4.48 4.38 -19.84 -0.09 -4.57 16 13 C -0.06 -1.84 9.69 22.25 0.22 -1.63 16 14 C -0.25 -10.68 9.17 22.39 0.21 -10.48 16 15 C 0.11 5.76 6.65 22.58 0.15 5.91 16 16 O -0.23 -14.19 9.76 -22.72 -0.22 -14.41 16 17 C -0.41 -24.22 9.49 67.92 0.64 -23.58 16 18 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 19 C -0.02 -1.38 5.49 84.84 0.47 -0.91 16 20 N -0.92 -56.77 13.67 21.62 0.30 -56.47 16 21 Si 1.02 42.88 29.55 68.60 2.03 44.91 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 25 C -0.21 -8.84 9.99 22.39 0.22 -8.61 16 26 C -0.05 -1.70 9.69 22.25 0.22 -1.49 16 27 H 0.07 0.69 7.68 -2.39 -0.02 0.67 16 28 H 0.05 0.51 7.23 -2.39 -0.02 0.49 16 29 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.52 7.23 -2.39 -0.02 0.50 16 32 H 0.07 0.70 7.68 -2.39 -0.02 0.68 16 33 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.14 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.08 0.84 8.13 -2.38 -0.02 0.82 16 36 H 0.08 0.84 8.13 -2.39 -0.02 0.82 16 37 H 0.14 1.59 8.08 -2.39 -0.02 1.57 16 38 H 0.14 1.63 8.08 -2.39 -0.02 1.61 16 39 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.12 5.21 5.64 -2.91 -0.02 5.20 16 41 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 43 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -82.28 372.86 8.89 -73.39 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.02 Total: 15.82 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 5.51 Total: -32.61 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: 0.67 Total: -65.94 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.33 Total: -35.56 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -82.28 8.89 -73.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184783292.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.640 kcal (2) G-P(sol) polarization free energy of solvation -82.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds