Wall clock time and date at job start Tue Mar 31 2020 12:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46821 * 2 1 4 4 C 1.50700 * 109.47443 * 239.99636 * 2 1 3 5 5 H 1.07997 * 119.99854 * 239.99921 * 4 2 1 6 6 C 1.37878 * 119.99886 * 59.99772 * 4 2 1 7 7 N 1.31522 * 119.99908 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00150 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47234 * 90.00204 * 8 6 4 10 10 H 1.48500 * 109.47184 * 210.00342 * 8 6 4 11 11 H 1.48499 * 109.46822 * 330.00141 * 8 6 4 12 12 C 1.53000 * 109.46982 * 119.99577 * 2 1 3 13 13 O 1.45198 * 109.46978 * 300.00163 * 12 2 1 14 14 C 1.34754 * 116.99852 * 180.02562 * 13 12 2 15 15 O 1.21507 * 119.99731 * 0.27071 * 14 13 12 16 16 C 1.47466 * 120.00067 * 180.02562 * 14 13 12 17 17 C 1.39824 * 120.08635 * 359.97438 * 16 14 13 18 18 C 1.37620 * 119.93347 * 179.97438 * 17 16 14 19 19 C 1.39190 * 120.10544 * 0.02562 * 18 17 16 20 20 C 1.39169 * 120.08826 * 0.02562 * 19 18 17 21 21 C 1.37634 * 120.12875 * 359.72930 * 20 19 18 22 22 C 1.50669 * 119.81624 * 179.97438 * 20 19 18 23 23 C 1.52914 * 109.50383 * 326.10670 * 22 20 19 24 24 C 1.50497 * 109.86792 * 48.51034 * 23 22 20 25 25 O 1.21276 * 119.59857 * 144.84737 * 24 23 22 26 26 N 1.34527 * 120.80604 * 324.82153 * 24 23 22 27 27 H 1.08999 * 109.47428 * 300.00232 * 1 2 3 28 28 H 1.08996 * 109.46783 * 60.00413 * 1 2 3 29 29 H 1.08998 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47115 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47204 * 299.99583 * 3 2 1 32 32 H 1.08999 * 109.47767 * 59.99969 * 3 2 1 33 33 H 0.96996 * 119.99888 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46945 * 180.02562 * 12 2 1 35 35 H 1.08998 * 109.47020 * 60.00316 * 12 2 1 36 36 H 1.07998 * 120.03522 * 359.94527 * 17 16 14 37 37 H 1.07999 * 119.94417 * 180.02562 * 18 17 16 38 38 H 1.07999 * 120.04421 * 180.28600 * 21 20 19 39 39 H 1.08998 * 109.47770 * 206.09077 * 22 20 19 40 40 H 1.09000 * 109.45386 * 86.10457 * 22 20 19 41 41 H 1.09002 * 109.40089 * 288.39458 * 23 22 20 42 42 H 1.08993 * 109.41104 * 168.63422 * 23 22 20 43 43 H 0.96993 * 119.72434 * 180.75055 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3429 -2.1619 -4.4118 10 1 2.4867 -0.1416 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0366 2.4348 14 6 1.9184 -0.5483 3.6275 15 8 2.6238 -1.5364 3.6756 16 6 1.4634 0.0942 4.8744 17 6 0.6563 1.2348 4.8212 18 6 0.2331 1.8315 5.9868 19 6 0.6076 1.3019 7.2183 20 6 1.4118 0.1674 7.2744 21 6 1.8347 -0.4377 6.1128 22 6 1.8141 -0.4004 8.6107 23 6 1.9924 0.7377 9.6163 24 6 0.8038 1.6593 9.5617 25 8 0.4063 2.1852 10.5796 26 7 0.1773 1.9074 8.3973 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 0.7095 1.1616 -3.4844 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.3657 1.6473 3.8664 37 1 -0.3907 2.7122 5.9459 38 1 2.4549 -1.3207 6.1579 39 1 2.7532 -0.9438 8.5069 40 1 1.0386 -1.0797 8.9648 41 1 2.8958 1.2971 9.3735 42 1 2.0833 0.3232 10.6202 43 1 -0.5804 2.5125 8.3784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184795277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:53 Heat of formation + Delta-G solvation = -112.063464 kcal Electronic energy + Delta-G solvation = -25839.791082 eV Core-core repulsion = 22042.178831 eV Total energy + Delta-G solvation = -3797.612251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40613 -40.02043 -38.76148 -36.63321 -35.51124 -34.87774 -34.41244 -31.32915 -30.50986 -30.14970 -26.01307 -25.64760 -25.22440 -25.02306 -23.93495 -23.06981 -21.12871 -19.54459 -18.84641 -18.35678 -17.48825 -17.31299 -16.52365 -15.97097 -15.80239 -15.77803 -15.26619 -14.80098 -14.67304 -14.37247 -14.07490 -13.69896 -13.61748 -13.16898 -13.02675 -12.86878 -12.79811 -12.22111 -11.97415 -11.74314 -11.53865 -11.35315 -11.20984 -11.02971 -10.94500 -10.72908 -10.46485 -10.44269 -10.29243 -10.14036 -9.92527 -9.44069 -9.34666 -9.21454 -8.78714 -8.43323 -8.39772 -6.04488 -4.15993 0.43386 1.00994 1.98671 2.58216 2.72874 3.12246 3.26316 3.33415 3.37666 3.60933 3.91946 4.20360 4.28988 4.36675 4.50891 4.70669 4.83433 4.89102 5.02384 5.19219 5.22150 5.29542 5.34527 5.49075 5.66088 5.76837 5.89602 6.06098 6.08127 6.14902 6.22763 6.41583 6.44975 6.70593 6.72883 6.95451 7.00814 7.10372 7.11656 7.37425 7.52106 7.59413 7.67828 8.02591 8.11148 8.20488 8.36710 8.83973 9.49677 10.96746 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036759 B = 0.002429 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.527591 B =11522.592197 C =12052.569787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 C -0.130 4.130 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.085 3.915 13 O -0.344 6.344 14 C 0.500 3.500 15 O -0.518 6.518 16 C -0.137 4.137 17 C -0.027 4.027 18 C -0.164 4.164 19 C 0.186 3.814 20 C -0.141 4.141 21 C -0.021 4.021 22 C -0.075 4.075 23 C -0.139 4.139 24 C 0.522 3.478 25 O -0.527 6.527 26 N -0.661 5.661 27 H 0.016 0.984 28 H 0.084 0.916 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.084 0.916 32 H 0.016 0.984 33 H 0.261 0.739 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 1.641 20.416 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.013 3.987 13 O -0.259 6.259 14 C 0.345 3.655 15 O -0.409 6.409 16 C -0.139 4.139 17 C -0.046 4.046 18 C -0.185 4.185 19 C 0.089 3.911 20 C -0.144 4.144 21 C -0.039 4.039 22 C -0.112 4.112 23 C -0.179 4.179 24 C 0.311 3.689 25 O -0.403 6.403 26 N -0.305 5.305 27 H 0.035 0.965 28 H 0.103 0.897 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.651 1.661 20.887 20.963 hybrid contribution 0.053 -0.309 -1.098 1.142 sum -0.598 1.353 19.789 19.844 Atomic orbital electron populations 1.21776 0.97319 0.98996 1.00652 1.18247 0.93410 0.93073 0.88256 1.21775 0.98139 0.98175 1.00653 1.20935 1.31980 1.12301 0.89791 0.92482 1.24856 0.94805 0.94898 0.98794 1.69827 1.36372 1.22533 1.23322 0.86539 0.79294 0.79382 0.82470 1.20637 1.21156 1.19897 1.23712 0.98285 0.95834 0.80911 1.86565 1.69076 1.55635 1.14644 1.20988 0.77642 0.81900 0.84956 1.90799 1.35902 1.25752 1.88454 1.19237 1.04353 0.99027 0.91289 1.21426 0.91801 0.92267 0.99078 1.20780 1.05245 1.02293 0.90164 1.17857 0.95265 0.92030 0.85937 1.19349 1.03050 0.96134 0.95850 1.20938 0.95588 0.98069 0.89329 1.20420 1.03603 0.96994 0.90195 1.21723 0.96714 0.96665 1.02762 1.20837 0.84525 0.81419 0.82090 1.90788 1.65674 1.50946 1.32871 1.43580 1.33749 1.46550 1.06608 0.96476 0.89726 0.95805 0.95796 0.89727 0.96471 0.92893 0.92415 0.92422 0.83240 0.84494 0.83796 0.88607 0.89700 0.87575 0.87106 0.74880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.11 37.16 0.30 -2.73 16 2 C 0.07 1.68 0.58 -155.66 -0.09 1.59 16 3 C -0.13 -3.03 8.11 37.16 0.30 -2.73 16 4 C -0.51 -13.42 8.01 -34.44 -0.28 -13.69 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -23.55 9.35 55.43 0.52 -23.03 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.09 1.83 4.27 37.16 0.16 1.99 16 13 O -0.34 -6.55 8.12 -40.64 -0.33 -6.88 16 14 C 0.50 8.60 7.89 34.49 0.27 8.87 16 15 O -0.52 -10.03 16.13 -19.27 -0.31 -10.34 16 16 C -0.14 -1.79 5.88 -104.96 -0.62 -2.41 16 17 C -0.03 -0.30 9.60 -39.21 -0.38 -0.68 16 18 C -0.16 -1.44 9.89 -39.45 -0.39 -1.83 16 19 C 0.19 1.62 6.51 -83.74 -0.55 1.07 16 20 C -0.14 -1.24 5.65 -104.51 -0.59 -1.83 16 21 C -0.02 -0.22 9.22 -39.22 -0.36 -0.58 16 22 C -0.07 -0.46 5.99 -27.94 -0.17 -0.63 16 23 C -0.14 -0.86 6.08 -28.03 -0.17 -1.03 16 24 C 0.52 4.76 7.71 -11.20 -0.09 4.67 16 25 O -0.53 -6.64 17.91 5.56 0.10 -6.54 16 26 N -0.66 -5.24 5.34 -9.98 -0.05 -5.29 16 27 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 28 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 32 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.15 1.69 7.60 -52.49 -0.40 1.29 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.14 1.47 7.64 -52.49 -0.40 1.07 16 39 H 0.10 0.44 8.06 -51.93 -0.42 0.03 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.41 2.66 8.82 -40.82 -0.36 2.30 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -30.71 357.08 -8.38 -39.08 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.93 Total: 0.34 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.73 Total: -8.24 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.47 Total: -28.32 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.54 Total: -23.76 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.71 -8.38 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184795277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.982 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds