Wall clock time and date at job start Tue Mar 31 2020 12:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46821 * 2 1 4 4 C 1.50700 * 109.47443 * 239.99636 * 2 1 3 5 5 H 1.07997 * 119.99854 * 239.99921 * 4 2 1 6 6 C 1.37878 * 119.99886 * 59.99772 * 4 2 1 7 7 N 1.31522 * 119.99908 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00150 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47234 * 90.00204 * 8 6 4 10 10 H 1.48500 * 109.47184 * 210.00342 * 8 6 4 11 11 H 1.48499 * 109.46822 * 330.00141 * 8 6 4 12 12 C 1.53000 * 109.46982 * 119.99577 * 2 1 3 13 13 O 1.45198 * 109.46978 * 300.00163 * 12 2 1 14 14 C 1.34754 * 116.99852 * 180.02562 * 13 12 2 15 15 O 1.21507 * 119.99731 * 0.27071 * 14 13 12 16 16 C 1.47466 * 120.00067 * 180.02562 * 14 13 12 17 17 C 1.39824 * 120.08635 * 359.97438 * 16 14 13 18 18 C 1.37620 * 119.93347 * 179.97438 * 17 16 14 19 19 C 1.39190 * 120.10544 * 0.02562 * 18 17 16 20 20 C 1.39169 * 120.08826 * 0.02562 * 19 18 17 21 21 C 1.37634 * 120.12875 * 359.72930 * 20 19 18 22 22 C 1.50669 * 119.81624 * 179.97438 * 20 19 18 23 23 C 1.52914 * 109.50383 * 326.10670 * 22 20 19 24 24 C 1.50497 * 109.86792 * 48.51034 * 23 22 20 25 25 O 1.21276 * 119.59857 * 144.84737 * 24 23 22 26 26 N 1.34527 * 120.80604 * 324.82153 * 24 23 22 27 27 H 1.08999 * 109.47428 * 300.00232 * 1 2 3 28 28 H 1.08996 * 109.46783 * 60.00413 * 1 2 3 29 29 H 1.08998 * 109.46985 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47115 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47204 * 299.99583 * 3 2 1 32 32 H 1.08999 * 109.47767 * 59.99969 * 3 2 1 33 33 H 0.96996 * 119.99888 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46945 * 180.02562 * 12 2 1 35 35 H 1.08998 * 109.47020 * 60.00316 * 12 2 1 36 36 H 1.07998 * 120.03522 * 359.94527 * 17 16 14 37 37 H 1.07999 * 119.94417 * 180.02562 * 18 17 16 38 38 H 1.07999 * 120.04421 * 180.28600 * 21 20 19 39 39 H 1.08998 * 109.47770 * 206.09077 * 22 20 19 40 40 H 1.09000 * 109.45386 * 86.10457 * 22 20 19 41 41 H 1.09002 * 109.40089 * 288.39458 * 23 22 20 42 42 H 1.08993 * 109.41104 * 168.63422 * 23 22 20 43 43 H 0.96993 * 119.72434 * 180.75055 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.3429 -2.1619 -4.4118 10 1 2.4867 -0.1416 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 6 2.0400 -0.7212 1.2493 13 8 1.5559 -0.0366 2.4348 14 6 1.9184 -0.5483 3.6275 15 8 2.6238 -1.5364 3.6756 16 6 1.4634 0.0942 4.8744 17 6 0.6563 1.2348 4.8212 18 6 0.2331 1.8315 5.9868 19 6 0.6076 1.3019 7.2183 20 6 1.4118 0.1674 7.2744 21 6 1.8347 -0.4377 6.1128 22 6 1.8141 -0.4004 8.6107 23 6 1.9924 0.7377 9.6163 24 6 0.8038 1.6593 9.5617 25 8 0.4063 2.1852 10.5796 26 7 0.1773 1.9074 8.3973 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 0.7095 1.1616 -3.4844 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.3657 1.6473 3.8664 37 1 -0.3907 2.7122 5.9459 38 1 2.4549 -1.3207 6.1579 39 1 2.7532 -0.9438 8.5069 40 1 1.0386 -1.0797 8.9648 41 1 2.8958 1.2971 9.3735 42 1 2.0833 0.3232 10.6202 43 1 -0.5804 2.5125 8.3784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184795277.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:52 Heat of formation + Delta-G solvation = -128.554141 kcal Electronic energy + Delta-G solvation = -25840.506171 eV Core-core repulsion = 22042.178831 eV Total energy + Delta-G solvation = -3798.327340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.16466 -41.31904 -39.68518 -38.23609 -36.57801 -36.36795 -35.03617 -33.25975 -31.26910 -31.01414 -27.64442 -27.54692 -27.13598 -25.63529 -25.06253 -23.81171 -22.24534 -20.77977 -20.34485 -19.12158 -18.48868 -18.25838 -17.69478 -17.62035 -17.29218 -16.90836 -16.61272 -15.96407 -15.54436 -15.21625 -14.94752 -14.87078 -14.69949 -14.66912 -14.23910 -14.15495 -13.66719 -13.45836 -13.30849 -13.13269 -12.86122 -12.81496 -12.61726 -12.50757 -12.31502 -12.13048 -12.04739 -11.81892 -11.70282 -11.65628 -11.25323 -11.19004 -11.15213 -10.71957 -10.38970 -9.96233 -9.22210 -8.03695 -6.21390 -0.47209 0.25188 1.15887 1.43846 1.45799 1.54184 1.68530 1.79033 1.92622 2.46373 2.69858 3.19891 3.28755 3.57932 3.63666 3.74311 3.92662 4.15507 4.17968 4.27669 4.29523 4.29659 4.41681 4.63121 4.75650 4.84041 4.87005 4.88985 5.01202 5.07328 5.08100 5.10347 5.22032 5.25248 5.30332 5.39737 5.53398 5.59835 5.66188 5.67065 5.69135 6.01683 6.10486 6.19863 6.38854 6.75970 6.84821 6.85045 7.46532 8.95833 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036759 B = 0.002429 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.527591 B =11522.592197 C =12052.569787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.062 3.938 3 C -0.119 4.119 4 C -0.533 4.533 5 H 0.049 0.951 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.098 3.902 13 O -0.346 6.346 14 C 0.498 3.502 15 O -0.547 6.547 16 C -0.161 4.161 17 C -0.032 4.032 18 C -0.155 4.155 19 C 0.194 3.806 20 C -0.135 4.135 21 C -0.020 4.020 22 C -0.073 4.073 23 C -0.135 4.135 24 C 0.520 3.480 25 O -0.565 6.565 26 N -0.654 5.654 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.145 0.855 37 H 0.164 0.836 38 H 0.147 0.853 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.741 1.847 22.128 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 C -0.177 4.177 4 C -0.571 4.571 5 H 0.067 0.933 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.777 3.223 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.024 3.976 13 O -0.262 6.262 14 C 0.346 3.654 15 O -0.440 6.440 16 C -0.163 4.163 17 C -0.050 4.050 18 C -0.175 4.175 19 C 0.096 3.904 20 C -0.138 4.138 21 C -0.038 4.038 22 C -0.110 4.110 23 C -0.174 4.174 24 C 0.311 3.689 25 O -0.443 6.443 26 N -0.297 5.297 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.163 0.837 37 H 0.182 0.818 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.145 0.855 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -0.685 1.874 22.601 22.688 hybrid contribution 0.022 -0.327 -1.502 1.537 sum -0.663 1.547 21.098 21.165 Atomic orbital electron populations 1.21629 0.97034 0.98608 1.00428 1.18256 0.93649 0.93274 0.88629 1.21628 0.97744 0.97897 1.00425 1.21210 1.32265 1.12451 0.91210 0.93292 1.25494 0.95022 0.95562 1.01112 1.69936 1.36774 1.23216 1.23809 0.85668 0.78709 0.78426 0.79480 1.20326 1.20729 1.19838 1.23268 0.97570 0.95215 0.81515 1.86546 1.69307 1.55551 1.14811 1.21727 0.76878 0.81585 0.85242 1.90775 1.37403 1.27151 1.88645 1.19118 1.06782 1.00513 0.89902 1.21410 0.91842 0.91913 0.99881 1.20976 1.04689 1.02627 0.89223 1.17953 0.94526 0.91773 0.86115 1.19589 1.02062 0.95709 0.96417 1.20978 0.95611 0.98236 0.89020 1.20514 1.04965 0.97085 0.88389 1.21789 0.95692 0.96172 1.03733 1.21389 0.84868 0.81105 0.81538 1.90780 1.66907 1.52571 1.34091 1.43567 1.33759 1.46229 1.06156 0.94620 0.91835 0.96225 0.96207 0.91837 0.94619 0.92856 0.93237 0.93228 0.83685 0.81803 0.83575 0.86591 0.88745 0.86274 0.85535 0.74049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.11 71.98 0.58 -5.00 16 2 C 0.06 2.99 0.58 -52.93 -0.03 2.96 16 3 C -0.12 -5.59 8.11 71.98 0.58 -5.00 16 4 C -0.53 -28.32 8.01 25.60 0.21 -28.11 16 5 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 6 C 0.03 1.48 5.15 84.65 0.44 1.92 16 7 N -0.90 -48.34 9.35 21.45 0.20 -48.14 16 8 Si 0.95 42.24 29.54 68.60 2.03 44.26 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 C 0.10 4.27 4.27 71.98 0.31 4.58 16 13 O -0.35 -13.24 8.12 -56.65 -0.46 -13.70 16 14 C 0.50 17.20 7.89 70.25 0.55 17.76 16 15 O -0.55 -21.48 16.13 19.81 0.32 -21.16 16 16 C -0.16 -4.08 5.88 -20.08 -0.12 -4.20 16 17 C -0.03 -0.66 9.60 22.51 0.22 -0.44 16 18 C -0.15 -2.32 9.89 22.35 0.22 -2.10 16 19 C 0.19 2.83 6.51 38.40 0.25 3.08 16 20 C -0.14 -2.01 5.65 -19.79 -0.11 -2.12 16 21 C -0.02 -0.39 9.22 22.50 0.21 -0.18 16 22 C -0.07 -0.64 5.99 29.81 0.18 -0.47 16 23 C -0.13 -1.23 6.08 29.76 0.18 -1.05 16 24 C 0.52 8.20 7.71 87.63 0.68 8.87 16 25 O -0.57 -13.31 17.91 -3.02 -0.05 -13.37 16 26 N -0.65 -8.60 5.34 -304.01 -1.62 -10.23 16 27 H 0.03 1.48 7.68 -2.39 -0.02 1.46 16 28 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 29 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 3.25 6.07 -2.38 -0.01 3.23 16 32 H 0.03 1.48 7.68 -2.39 -0.02 1.46 16 33 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 35 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.15 3.13 7.60 -2.91 -0.02 3.11 16 37 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.15 2.80 7.64 -2.91 -0.02 2.78 16 39 H 0.12 0.64 8.06 -2.39 -0.02 0.62 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.42 4.34 8.82 -92.71 -0.82 3.52 16 Total: -1.00 -66.41 357.08 4.97 -61.44 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.22 Total: 10.39 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 4.34 Total: -9.51 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -1.42 Total: -58.36 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -0.19 Total: -48.22 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -66.41 4.97 -61.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184795277.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.112 kcal (2) G-P(sol) polarization free energy of solvation -66.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds