Wall clock time and date at job start Tue Mar 31 2020 11:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33332 * 125.94954 * 2 1 4 4 N 1.32115 * 114.57580 * 180.02562 * 3 2 1 5 5 C 1.29688 * 116.87094 * 359.97438 * 4 3 2 6 6 N 1.38611 * 124.95101 * 180.02562 * 5 4 3 7 7 C 1.46495 * 120.00198 * 359.97438 * 6 5 4 8 8 C 1.50702 * 109.47341 * 179.97438 * 7 6 5 9 9 C 1.38286 * 119.92134 * 269.72425 * 8 7 6 10 10 C 1.38112 * 120.07015 * 179.72464 * 9 8 7 11 11 C 1.38905 * 119.92540 * 0.54482 * 10 9 8 12 12 N 1.39668 * 120.07384 * 179.74776 * 11 10 9 13 13 C 1.46509 * 120.00028 * 179.97438 * 12 11 10 14 14 C 1.46496 * 120.00057 * 359.97438 * 12 11 10 15 15 C 1.50700 * 109.47421 * 90.00299 * 14 12 11 16 16 H 1.08003 * 119.99786 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00308 * 180.02562 * 15 14 12 18 18 N 1.31516 * 120.00051 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47069 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47478 * 119.99556 * 19 17 15 22 22 H 1.48499 * 109.46975 * 239.99794 * 19 17 15 23 23 C 1.38916 * 119.84968 * 359.73185 * 11 10 9 24 24 C 1.38097 * 119.92507 * 359.97438 * 23 11 10 25 25 S 1.70966 * 110.09929 * 359.73162 * 5 4 3 26 26 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 29 29 H 1.07998 * 122.70777 * 359.97438 * 3 2 1 30 30 H 0.97006 * 120.00076 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46952 * 299.99379 * 7 6 5 32 32 H 1.08996 * 109.47571 * 59.99584 * 7 6 5 33 33 H 1.07996 * 119.96637 * 359.97438 * 9 8 7 34 34 H 1.07999 * 120.03385 * 180.27410 * 10 9 8 35 35 H 1.08995 * 109.46895 * 90.00127 * 13 12 11 36 36 H 1.08998 * 109.46749 * 210.00137 * 13 12 11 37 37 H 1.08992 * 109.46795 * 330.00167 * 13 12 11 38 38 H 1.09006 * 109.47127 * 209.99727 * 14 12 11 39 39 H 1.09000 * 109.47456 * 329.99641 * 14 12 11 40 40 H 0.96998 * 119.99962 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.03120 * 179.97438 * 23 11 10 42 42 H 1.08005 * 119.95852 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 7 3.5850 0.8188 -0.0005 5 6 3.9315 -0.4309 -0.0005 6 7 5.2385 -0.8925 -0.0005 7 6 6.3517 0.0597 -0.0011 8 6 7.6571 -0.6934 -0.0003 9 6 8.2573 -1.0321 1.1985 10 6 9.4507 -1.7273 1.2029 11 6 10.0537 -2.0762 0.0012 12 7 11.2633 -2.7746 0.0020 13 6 11.8977 -3.1423 -1.2664 14 6 11.8977 -3.1394 1.2711 15 6 11.4049 -4.4950 1.7077 16 1 10.6902 -5.0309 1.1007 17 6 11.8655 -5.0505 2.8825 18 7 12.7354 -4.3976 3.6219 19 14 11.2540 -6.7305 3.4240 20 1 10.2868 -7.2510 2.4245 21 1 12.4036 -7.6640 3.5337 22 1 10.5850 -6.6117 4.7444 23 6 9.4509 -1.7293 -1.2013 24 6 8.2545 -1.0395 -1.1984 25 16 2.5413 -1.4260 0.0078 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 0.8900 0.5138 28 1 -0.3633 -0.8900 0.5139 29 1 1.8967 2.0853 -0.0004 30 1 5.4160 -1.8462 0.0000 31 1 6.2937 0.6859 -0.8914 32 1 6.2940 0.6869 0.8885 33 1 7.7903 -0.7563 2.1325 34 1 9.9167 -1.9954 2.1395 35 1 12.5688 -2.3436 -1.5820 36 1 12.4655 -4.0634 -1.1350 37 1 11.1306 -3.2936 -2.0258 38 1 12.9794 -3.1708 1.1407 39 1 11.6446 -2.3990 2.0299 40 1 13.0597 -4.7886 4.4482 41 1 9.9174 -1.9988 -2.1373 42 1 7.7856 -0.7692 -2.1330 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185854220.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:42 Heat of formation + Delta-G solvation = 61.629984 kcal Electronic energy + Delta-G solvation = -22617.186264 eV Core-core repulsion = 19302.151548 eV Total energy + Delta-G solvation = -3315.034716 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73278 -40.33626 -37.91489 -36.32374 -34.75961 -32.98622 -31.95528 -31.35489 -29.65730 -27.95571 -26.82244 -26.04372 -24.52423 -23.72673 -23.05296 -21.25889 -20.37703 -19.59666 -18.65388 -18.10616 -17.26043 -16.96721 -16.41894 -16.13094 -15.89057 -15.63738 -15.36786 -15.30585 -14.82090 -14.64121 -14.37327 -14.15323 -13.98681 -13.75231 -13.48284 -13.33349 -13.24766 -13.18651 -13.02280 -12.69185 -12.57545 -12.30165 -12.07293 -11.97580 -11.74988 -11.49809 -10.97328 -10.66916 -10.62046 -10.38680 -10.07453 -9.74098 -8.54466 -8.39513 -7.87990 -6.38917 0.11098 0.15704 0.64955 0.73073 0.89571 1.35364 1.37436 1.49070 2.08725 2.31903 2.38792 2.58817 3.05012 3.10645 3.81808 3.94850 4.00900 4.18700 4.27562 4.38589 4.44271 4.45077 4.61320 4.68796 4.72655 4.84029 4.84494 4.87896 4.99123 5.00886 5.05840 5.10117 5.18799 5.27342 5.35679 5.53687 5.58450 5.67251 5.83559 5.94549 6.04915 6.12210 6.22548 6.45855 6.80054 6.87914 7.12063 7.32976 8.81857 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.002564 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.710700 B =10919.216330 C =11967.300328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.269 4.269 3 C 0.062 3.938 4 N -0.579 5.579 5 C 0.306 3.694 6 N -0.687 5.687 7 C 0.204 3.796 8 C -0.186 4.186 9 C -0.050 4.050 10 C -0.217 4.217 11 C 0.222 3.778 12 N -0.628 5.628 13 C 0.096 3.904 14 C 0.264 3.736 15 C -0.539 4.539 16 H 0.050 0.950 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.278 1.278 23 C -0.217 4.217 24 C -0.043 4.043 25 S 0.086 5.914 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.190 0.810 30 H 0.418 0.582 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.010 0.990 39 H 0.013 0.987 40 H 0.267 0.733 41 H 0.137 0.863 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.358 8.175 -10.446 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.392 4.392 3 C -0.087 4.087 4 N -0.306 5.306 5 C -0.065 4.065 6 N -0.327 5.327 7 C 0.080 3.920 8 C -0.189 4.189 9 C -0.070 4.070 10 C -0.239 4.239 11 C 0.116 3.884 12 N -0.335 5.335 13 C -0.047 4.047 14 C 0.142 3.858 15 C -0.578 4.578 16 H 0.069 0.931 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.786 3.214 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.204 1.204 23 C -0.240 4.240 24 C -0.062 4.062 25 S 0.335 5.665 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.207 0.793 30 H 0.256 0.744 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.076 0.924 41 H 0.154 0.846 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.631 7.513 -10.287 23.402 hybrid contribution 0.351 -0.492 0.883 1.069 sum -19.280 7.022 -9.404 22.572 Atomic orbital electron populations 1.20184 0.85010 1.03814 1.03273 1.25697 1.02228 0.92893 1.18360 1.21658 0.85766 1.00874 1.00397 1.66433 1.19289 1.16790 1.28054 1.23791 0.91994 0.92129 0.98631 1.44360 0.99409 1.09519 1.79443 1.19855 0.80651 0.89512 1.02021 1.19426 0.98393 1.07996 0.93050 1.20829 0.93254 0.94750 0.98124 1.20778 0.99300 1.07088 0.96773 1.18296 0.85790 0.89687 0.94619 1.47030 1.21328 1.58030 1.07064 1.21645 0.97966 0.99929 0.85182 1.18817 0.91792 0.94186 0.80975 1.21779 1.25540 1.03749 1.06688 0.93149 1.25781 0.95044 1.01573 0.96347 1.70041 1.31915 1.39866 1.14805 0.85457 0.78329 0.79440 0.78151 1.19367 1.20074 1.20397 1.20809 0.99291 1.07950 0.95905 1.20923 0.93244 0.94217 0.97806 1.83943 0.96928 1.11105 1.74544 0.90238 0.89101 0.91187 0.79318 0.74433 0.90917 0.92018 0.85873 0.88380 0.92766 0.92429 0.90093 0.97167 0.96954 0.92402 0.84565 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.41 71.24 0.74 0.06 16 2 C -0.27 -4.82 6.58 24.58 0.16 -4.66 16 3 C 0.06 1.26 11.24 83.54 0.94 2.20 16 4 N -0.58 -14.80 10.14 -202.03 -2.05 -16.85 16 5 C 0.31 7.35 8.09 179.32 1.45 8.80 16 6 N -0.69 -15.78 5.71 -354.76 -2.02 -17.80 16 7 C 0.20 4.84 6.07 85.63 0.52 5.36 16 8 C -0.19 -5.00 5.25 -19.84 -0.10 -5.10 16 9 C -0.05 -1.61 9.69 22.25 0.22 -1.40 16 10 C -0.22 -8.62 9.21 22.40 0.21 -8.42 16 11 C 0.22 8.59 6.55 38.22 0.25 8.84 16 12 N -0.63 -26.43 2.99 -726.56 -2.17 -28.61 16 13 C 0.10 3.16 10.19 127.77 1.30 4.46 16 14 C 0.26 13.55 4.91 85.63 0.42 13.97 16 15 C -0.54 -29.64 9.39 25.60 0.24 -29.40 16 16 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 17 C 0.01 0.65 5.46 84.65 0.46 1.12 16 18 N -0.93 -53.81 13.29 21.45 0.28 -53.52 16 19 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 23 C -0.22 -6.62 9.21 22.40 0.21 -6.41 16 24 C -0.04 -1.11 9.69 22.25 0.22 -0.90 16 25 S 0.09 1.70 23.21 -56.49 -1.31 0.39 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.42 8.94 8.59 -92.70 -0.80 8.15 16 31 H 0.07 1.66 8.08 -2.39 -0.02 1.65 16 32 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.12 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.10 4.56 6.14 -2.91 -0.02 4.54 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 37 H 0.08 2.23 6.20 -2.39 -0.01 2.21 16 38 H 0.01 0.56 8.07 -2.38 -0.02 0.54 16 39 H 0.01 0.69 6.20 -2.39 -0.01 0.68 16 40 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.14 3.56 6.14 -2.91 -0.02 3.54 16 42 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -64.51 366.57 2.22 -62.29 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.24 Total: 20.04 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 7.23 Total: -11.48 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -5.96 Total: -116.79 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -1.31 Total: 0.39 kcal Total: -64.51 2.22 -62.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185854220.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.922 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds