Wall clock time and date at job start Tue Mar 31 2020 12:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35689 * 116.99650 * 2 1 4 4 C 1.38609 * 120.16351 * 0.30571 * 3 2 1 5 5 C 1.38129 * 120.10805 * 180.29983 * 4 3 2 6 6 C 1.38559 * 120.43935 * 359.66969 * 5 4 3 7 7 C 1.37755 * 120.31935 * 0.02562 * 6 5 4 8 8 C 1.39928 * 119.87873 * 0.02562 * 7 6 5 9 9 C 1.46945 * 120.20926 * 180.02562 * 8 7 6 10 10 C 1.50702 * 119.99811 * 254.99678 * 9 8 7 11 11 C 1.35000 * 120.00442 * 74.99976 * 9 8 7 12 12 C 1.46237 * 120.00428 * 185.93792 * 11 9 8 13 13 O 1.21722 * 119.99685 * 4.94355 * 12 11 9 14 14 N 1.34770 * 120.00068 * 184.93848 * 12 11 9 15 15 C 1.47069 * 136.05787 * 359.63647 * 14 12 11 16 16 C 1.53241 * 88.08288 * 207.20184 * 15 14 12 17 17 O 1.42894 * 114.19979 * 87.72682 * 16 15 14 18 18 C 1.50705 * 114.32449 * 220.47183 * 16 15 14 19 19 H 1.08000 * 119.99872 * 99.22610 * 18 16 15 20 20 C 1.37875 * 119.99575 * 279.22074 * 18 16 15 21 21 N 1.31519 * 120.00141 * 9.84355 * 20 18 16 22 22 Si 1.86804 * 120.00007 * 189.83985 * 20 18 16 23 23 H 1.48497 * 109.47181 * 94.99177 * 22 20 18 24 24 H 1.48495 * 109.47382 * 214.99581 * 22 20 18 25 25 H 1.48501 * 109.46737 * 334.99677 * 22 20 18 26 26 C 1.47067 * 136.05789 * 179.97438 * 14 12 11 27 27 H 1.08999 * 109.47550 * 59.99903 * 1 2 3 28 28 H 1.09005 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47293 * 299.99300 * 1 2 3 30 30 H 1.08000 * 119.94128 * 359.96753 * 4 3 2 31 31 H 1.08003 * 119.77506 * 179.69478 * 5 4 3 32 32 H 1.08002 * 119.84195 * 180.02562 * 6 5 4 33 33 H 1.08005 * 120.06012 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47666 * 354.88359 * 10 9 8 35 35 H 1.09001 * 109.47385 * 234.88011 * 10 9 8 36 36 H 1.09004 * 109.46911 * 114.88117 * 10 9 8 37 37 H 1.08007 * 119.99431 * 5.94466 * 11 9 8 38 38 H 1.09000 * 113.46711 * 321.93334 * 15 14 12 39 39 H 1.08996 * 113.47034 * 92.37414 * 15 14 12 40 40 H 0.96697 * 114.00104 * 90.34336 * 17 16 15 41 41 H 0.97000 * 119.99531 * 179.97438 * 21 20 18 42 42 H 1.08991 * 113.47204 * 267.62696 * 26 14 12 43 43 H 1.09002 * 113.46489 * 38.01205 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2932 2.3736 0.0064 5 6 1.9214 3.6038 0.0001 6 6 3.3046 3.6857 -0.0057 7 6 4.0690 2.5397 -0.0058 8 6 3.4466 1.2865 -0.0006 9 6 4.2550 0.0594 -0.0001 10 6 4.3833 -0.7588 -1.2591 11 6 4.8828 -0.3350 1.1281 12 6 5.7904 -1.4812 1.0974 13 8 6.0499 -2.0238 0.0392 14 7 6.3396 -1.9367 2.2408 15 6 6.2849 -1.5660 3.6629 16 6 7.6847 -2.1692 3.8210 17 8 8.7499 -1.2560 3.5503 18 6 7.8822 -2.9551 5.0916 19 1 7.8127 -4.0327 5.0764 20 6 8.1517 -2.2982 6.2735 21 7 8.0463 -0.9888 6.3370 22 14 8.6665 -3.2681 7.7848 23 1 10.1486 -3.2958 7.8740 24 1 8.1094 -2.6229 9.0006 25 1 8.1509 -4.6569 7.6809 26 6 7.2620 -3.0194 2.6146 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 0.2146 2.3190 0.0109 31 1 1.3304 4.5078 0.0002 32 1 3.7857 4.6526 -0.0101 33 1 5.1469 2.6084 -0.0107 34 1 3.7405 -0.3387 -2.0327 35 1 4.0834 -1.7870 -1.0564 36 1 5.4189 -0.7427 -1.5990 37 1 4.7146 0.1961 2.0535 38 1 6.2564 -0.4893 3.8301 39 1 5.5164 -2.1003 4.2215 40 1 9.0550 -0.7664 4.3263 41 1 8.2356 -0.5268 7.1686 42 1 6.7563 -3.9444 2.8913 43 1 8.0623 -3.1768 1.8915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186802857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:50 Heat of formation + Delta-G solvation = -37.799103 kcal Electronic energy + Delta-G solvation = -26084.473520 eV Core-core repulsion = 22290.081613 eV Total energy + Delta-G solvation = -3794.391907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.36789 -39.50126 -37.81089 -37.35830 -34.60538 -33.93218 -32.27483 -30.49605 -30.07781 -29.12370 -27.47006 -27.03286 -25.16495 -25.00401 -23.40225 -22.16902 -20.74225 -19.35491 -18.17150 -17.72508 -17.25708 -16.47026 -16.24375 -15.92514 -15.62230 -15.23496 -14.66752 -14.66303 -14.54932 -14.20543 -13.89600 -13.86646 -13.11581 -12.99661 -12.84401 -12.46742 -12.41108 -12.15292 -12.02522 -11.87500 -11.72450 -11.67991 -11.44159 -11.30380 -11.05901 -11.02267 -10.86103 -10.48065 -10.23647 -9.41969 -9.15841 -8.98288 -8.84324 -8.81218 -8.31329 -8.24601 -7.70190 -6.37587 -4.46751 1.02742 1.27699 1.69580 3.09054 3.16382 3.25047 3.27685 3.54294 3.73136 3.90643 4.21497 4.53581 4.65592 4.82133 4.86163 4.90199 4.92349 5.11347 5.23665 5.25442 5.27173 5.43757 5.48887 5.61256 5.72958 5.89798 5.98596 6.03587 6.11845 6.20128 6.23967 6.33423 6.40103 6.46254 6.57308 6.58296 6.64977 6.73651 6.80352 6.89882 7.13844 7.23346 7.63594 7.81845 8.56133 8.63363 8.91254 9.24089 9.29413 10.68584 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.002985 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.805130 B = 9377.062930 C = 9720.812911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.141 3.859 4 C -0.211 4.211 5 C -0.080 4.080 6 C -0.156 4.156 7 C -0.062 4.062 8 C -0.086 4.086 9 C 0.000 4.000 10 C -0.098 4.098 11 C -0.190 4.190 12 C 0.566 3.434 13 O -0.564 6.564 14 N -0.632 5.632 15 C 0.081 3.919 16 C 0.238 3.762 17 O -0.566 6.566 18 C -0.539 4.539 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.890 5.890 22 Si 0.903 3.097 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.271 1.271 26 C 0.109 3.891 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.386 0.614 41 H 0.271 0.729 42 H 0.085 0.915 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.111 8.044 -9.666 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.096 3.904 4 C -0.230 4.230 5 C -0.098 4.098 6 C -0.175 4.175 7 C -0.080 4.080 8 C -0.087 4.087 9 C -0.002 4.002 10 C -0.155 4.155 11 C -0.211 4.211 12 C 0.359 3.641 13 O -0.447 6.447 14 N -0.364 5.364 15 C -0.042 4.042 16 C 0.196 3.804 17 O -0.375 6.375 18 C -0.577 4.577 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.528 5.528 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.014 4.014 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.140 0.860 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.237 0.763 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.048 7.558 -10.870 19.304 hybrid contribution -0.167 0.111 1.693 1.705 sum -14.216 7.669 -9.177 18.577 Atomic orbital electron populations 1.23082 0.78483 1.04104 1.01179 1.86116 1.21157 1.26529 1.88077 1.19141 0.91214 0.84450 0.95635 1.21149 0.99934 0.92230 1.09643 1.20996 0.94702 0.96850 0.97258 1.20981 0.93770 0.98430 1.04287 1.21215 1.00269 0.90230 0.96333 1.18298 0.89584 0.93659 1.07161 1.20728 0.92050 0.91851 0.95606 1.20857 1.02574 0.98922 0.93105 1.22709 1.00460 0.99454 0.98436 1.17659 0.80286 0.83853 0.82264 1.90728 1.63787 1.60860 1.29359 1.49641 1.46169 1.33362 1.07224 1.24033 1.02180 1.00934 0.77034 1.19503 0.83379 0.86560 0.90936 1.86086 1.53285 1.58247 1.39856 1.21379 1.50533 0.94094 0.91730 0.90939 1.25081 0.93654 0.95164 0.99171 1.69770 1.47244 1.07472 1.28288 0.86394 0.79058 0.80172 0.81357 1.20278 1.21038 1.19544 1.23276 0.90673 0.91360 0.96061 0.92719 0.88136 0.92621 0.85377 0.85825 0.85577 0.84851 0.93541 0.90384 0.89653 0.86000 0.91649 0.90198 0.76287 0.91933 0.89727 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.92 9.95 -18.77 -0.19 -4.11 16 3 C 0.14 1.82 6.70 -38.64 -0.26 1.56 16 4 C -0.21 -2.18 9.03 -39.48 -0.36 -2.53 16 5 C -0.08 -0.76 10.03 -39.50 -0.40 -1.16 16 6 C -0.16 -1.60 10.02 -39.64 -0.40 -2.00 16 7 C -0.06 -0.77 9.79 -39.13 -0.38 -1.15 16 8 C -0.09 -1.22 5.21 -104.93 -0.55 -1.76 16 9 C 0.00 0.00 5.00 -102.25 -0.51 -0.51 16 10 C -0.10 -1.57 8.34 36.01 0.30 -1.27 16 11 C -0.19 -3.49 9.54 -37.52 -0.36 -3.85 16 12 C 0.57 12.26 7.93 -13.05 -0.10 12.15 16 13 O -0.56 -13.08 14.01 5.17 0.07 -13.00 16 14 N -0.63 -14.09 3.69 -187.09 -0.69 -14.78 16 15 C 0.08 1.83 7.72 -8.64 -0.07 1.76 16 16 C 0.24 5.78 1.41 -91.38 -0.13 5.65 16 17 O -0.57 -14.50 13.56 -35.23 -0.48 -14.98 16 18 C -0.54 -13.57 8.65 -34.44 -0.30 -13.86 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 21 N -0.89 -22.53 11.80 55.43 0.65 -21.87 16 22 Si 0.90 19.43 29.55 -169.99 -5.02 14.40 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 C 0.11 2.45 8.04 -8.49 -0.07 2.38 16 27 H 0.05 0.35 7.68 -51.93 -0.40 -0.05 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 31 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.05 0.64 7.99 -51.93 -0.42 0.22 16 35 H 0.08 1.34 7.44 -51.93 -0.39 0.96 16 36 H 0.09 1.45 7.11 -51.93 -0.37 1.08 16 37 H 0.12 2.16 7.97 -52.48 -0.42 1.74 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 40 H 0.39 9.83 7.07 45.56 0.32 10.15 16 41 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 42 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 43 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -29.58 366.46 -8.12 -37.70 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.32 Total: 12.79 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.67 Total: -1.67 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.04 Total: -36.66 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.59 Total: -32.09 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.58 -8.12 -37.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186802857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.098 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds