Wall clock time and date at job start Tue Mar 31 2020 12:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35689 * 116.99650 * 2 1 4 4 C 1.38609 * 120.16351 * 0.30571 * 3 2 1 5 5 C 1.38129 * 120.10805 * 180.29983 * 4 3 2 6 6 C 1.38559 * 120.43935 * 359.66969 * 5 4 3 7 7 C 1.37755 * 120.31935 * 0.02562 * 6 5 4 8 8 C 1.39928 * 119.87873 * 0.02562 * 7 6 5 9 9 C 1.46945 * 120.20926 * 180.02562 * 8 7 6 10 10 C 1.50702 * 119.99811 * 254.99678 * 9 8 7 11 11 C 1.35000 * 120.00442 * 74.99976 * 9 8 7 12 12 C 1.46237 * 120.00428 * 185.93792 * 11 9 8 13 13 O 1.21722 * 119.99685 * 4.94355 * 12 11 9 14 14 N 1.34770 * 120.00068 * 184.93848 * 12 11 9 15 15 C 1.47069 * 136.05787 * 359.63647 * 14 12 11 16 16 C 1.53241 * 88.08288 * 207.20184 * 15 14 12 17 17 O 1.42894 * 114.19979 * 87.72682 * 16 15 14 18 18 C 1.50705 * 114.32449 * 220.47183 * 16 15 14 19 19 H 1.08000 * 119.99872 * 99.22610 * 18 16 15 20 20 C 1.37875 * 119.99575 * 279.22074 * 18 16 15 21 21 N 1.31519 * 120.00141 * 9.84355 * 20 18 16 22 22 Si 1.86804 * 120.00007 * 189.83985 * 20 18 16 23 23 H 1.48497 * 109.47181 * 94.99177 * 22 20 18 24 24 H 1.48495 * 109.47382 * 214.99581 * 22 20 18 25 25 H 1.48501 * 109.46737 * 334.99677 * 22 20 18 26 26 C 1.47067 * 136.05789 * 179.97438 * 14 12 11 27 27 H 1.08999 * 109.47550 * 59.99903 * 1 2 3 28 28 H 1.09005 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47293 * 299.99300 * 1 2 3 30 30 H 1.08000 * 119.94128 * 359.96753 * 4 3 2 31 31 H 1.08003 * 119.77506 * 179.69478 * 5 4 3 32 32 H 1.08002 * 119.84195 * 180.02562 * 6 5 4 33 33 H 1.08005 * 120.06012 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47666 * 354.88359 * 10 9 8 35 35 H 1.09001 * 109.47385 * 234.88011 * 10 9 8 36 36 H 1.09004 * 109.46911 * 114.88117 * 10 9 8 37 37 H 1.08007 * 119.99431 * 5.94466 * 11 9 8 38 38 H 1.09000 * 113.46711 * 321.93334 * 15 14 12 39 39 H 1.08996 * 113.47034 * 92.37414 * 15 14 12 40 40 H 0.96697 * 114.00104 * 90.34336 * 17 16 15 41 41 H 0.97000 * 119.99531 * 179.97438 * 21 20 18 42 42 H 1.08991 * 113.47204 * 267.62696 * 26 14 12 43 43 H 1.09002 * 113.46489 * 38.01205 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 1.2932 2.3736 0.0064 5 6 1.9214 3.6038 0.0001 6 6 3.3046 3.6857 -0.0057 7 6 4.0690 2.5397 -0.0058 8 6 3.4466 1.2865 -0.0006 9 6 4.2550 0.0594 -0.0001 10 6 4.3833 -0.7588 -1.2591 11 6 4.8828 -0.3350 1.1281 12 6 5.7904 -1.4812 1.0974 13 8 6.0499 -2.0238 0.0392 14 7 6.3396 -1.9367 2.2408 15 6 6.2849 -1.5660 3.6629 16 6 7.6847 -2.1692 3.8210 17 8 8.7499 -1.2560 3.5503 18 6 7.8822 -2.9551 5.0916 19 1 7.8127 -4.0327 5.0764 20 6 8.1517 -2.2982 6.2735 21 7 8.0463 -0.9888 6.3370 22 14 8.6665 -3.2681 7.7848 23 1 10.1486 -3.2958 7.8740 24 1 8.1094 -2.6229 9.0006 25 1 8.1509 -4.6569 7.6809 26 6 7.2620 -3.0194 2.6146 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 0.2146 2.3190 0.0109 31 1 1.3304 4.5078 0.0002 32 1 3.7857 4.6526 -0.0101 33 1 5.1469 2.6084 -0.0107 34 1 3.7405 -0.3387 -2.0327 35 1 4.0834 -1.7870 -1.0564 36 1 5.4189 -0.7427 -1.5990 37 1 4.7146 0.1961 2.0535 38 1 6.2564 -0.4893 3.8301 39 1 5.5164 -2.1003 4.2215 40 1 9.0550 -0.7664 4.3263 41 1 8.2356 -0.5268 7.1686 42 1 6.7563 -3.9444 2.8913 43 1 8.0623 -3.1768 1.8915 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186802857.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:49 Heat of formation + Delta-G solvation = -56.394270 kcal Electronic energy + Delta-G solvation = -26085.279867 eV Core-core repulsion = 22290.081613 eV Total energy + Delta-G solvation = -3795.198254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43427 -41.07607 -39.38365 -38.36877 -36.04686 -35.68177 -34.22399 -31.47988 -31.13656 -30.60983 -28.64407 -28.13792 -26.94444 -26.78889 -24.49382 -22.99373 -22.30589 -20.82992 -19.66519 -19.12826 -18.76533 -18.07328 -17.19109 -17.11121 -16.75352 -16.60240 -16.36801 -16.24705 -15.94378 -15.49207 -15.14360 -14.85466 -14.65381 -14.45850 -14.31791 -13.90955 -13.74420 -13.58654 -13.56342 -13.31095 -12.88020 -12.85601 -12.77826 -12.61139 -12.51346 -12.24672 -12.16071 -12.02979 -11.88664 -11.22349 -10.86293 -10.65805 -10.36342 -10.19018 -9.86701 -9.48503 -9.14130 -8.26997 -6.43099 0.01678 0.38539 0.46370 1.46550 1.50738 1.59596 2.01957 2.24727 2.33746 2.42111 2.72518 2.94583 3.40241 3.64174 3.88078 3.90312 3.96635 4.08656 4.17107 4.26755 4.38987 4.41694 4.44105 4.47142 4.53404 4.60952 4.64483 4.72762 4.75672 4.77952 4.82740 4.93446 4.94888 5.08323 5.20814 5.24233 5.32457 5.39873 5.48477 5.58235 5.70784 5.80732 5.89190 6.42553 6.62420 6.88188 7.18459 7.29508 7.30834 8.78947 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017314 B = 0.002985 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.805130 B = 9377.062930 C = 9720.812911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.131 3.869 4 C -0.209 4.209 5 C -0.071 4.071 6 C -0.157 4.157 7 C -0.073 4.073 8 C -0.124 4.124 9 C 0.034 3.966 10 C -0.095 4.095 11 C -0.221 4.221 12 C 0.561 3.439 13 O -0.587 6.587 14 N -0.637 5.637 15 C 0.095 3.905 16 C 0.222 3.778 17 O -0.577 6.577 18 C -0.559 4.559 19 H 0.073 0.927 20 C 0.036 3.964 21 N -0.908 5.908 22 Si 0.966 3.034 23 H -0.277 1.277 24 H -0.281 1.281 25 H -0.268 1.268 26 C 0.110 3.890 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.131 0.869 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.124 0.876 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.383 0.617 41 H 0.274 0.726 42 H 0.102 0.898 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.157 9.449 -9.586 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.085 3.915 4 C -0.228 4.228 5 C -0.088 4.088 6 C -0.175 4.175 7 C -0.091 4.091 8 C -0.125 4.125 9 C 0.032 3.968 10 C -0.151 4.151 11 C -0.242 4.242 12 C 0.356 3.644 13 O -0.472 6.472 14 N -0.370 5.370 15 C -0.028 4.028 16 C 0.181 3.819 17 O -0.386 6.386 18 C -0.597 4.597 19 H 0.092 0.908 20 C -0.166 4.166 21 N -0.547 5.547 22 Si 0.791 3.209 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.192 1.192 26 C -0.013 4.013 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.177 0.823 32 H 0.169 0.831 33 H 0.149 0.851 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.234 0.766 41 H 0.084 0.916 42 H 0.120 0.880 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.109 8.965 -10.798 21.365 hybrid contribution 0.368 -0.241 1.562 1.623 sum -15.741 8.723 -9.236 20.228 Atomic orbital electron populations 1.23371 0.76225 1.05431 1.02615 1.86070 1.23648 1.27024 1.88171 1.19281 0.90838 0.85466 0.95921 1.21495 1.01282 0.91527 1.08465 1.21467 0.94639 0.97893 0.94829 1.21307 0.94349 0.98614 1.03232 1.21315 1.00544 0.90463 0.96814 1.18327 0.90395 0.93054 1.10721 1.20994 0.89572 0.91741 0.94466 1.20808 1.02180 0.98326 0.93807 1.22506 1.02465 0.99593 0.99608 1.18205 0.80271 0.84286 0.81624 1.90703 1.64796 1.61852 1.29872 1.49690 1.46469 1.33440 1.07356 1.23821 1.01355 1.00322 0.77302 1.19717 0.83667 0.86915 0.91607 1.86074 1.54032 1.58608 1.39902 1.21570 1.51446 0.94283 0.92360 0.90849 1.25743 0.93334 0.95999 1.01525 1.69839 1.47276 1.08507 1.29052 0.85422 0.78411 0.78950 0.78115 1.20262 1.20699 1.19185 1.23288 0.90796 0.92002 0.95208 0.90873 0.87079 0.91441 0.82618 0.82299 0.83096 0.85140 0.91244 0.91779 0.90875 0.85826 0.92416 0.89612 0.76595 0.91647 0.88041 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.22 9.95 -90.08 -0.90 -9.12 16 3 C 0.13 3.17 6.70 22.88 0.15 3.33 16 4 C -0.21 -3.65 9.03 22.33 0.20 -3.45 16 5 C -0.07 -1.07 10.03 22.32 0.22 -0.84 16 6 C -0.16 -2.78 10.02 22.23 0.22 -2.56 16 7 C -0.07 -1.74 9.79 22.56 0.22 -1.52 16 8 C -0.12 -3.45 5.21 -20.06 -0.10 -3.55 16 9 C 0.03 1.14 5.00 -18.33 -0.09 1.05 16 10 C -0.10 -3.09 8.34 71.24 0.59 -2.49 16 11 C -0.22 -8.40 9.54 23.60 0.23 -8.17 16 12 C 0.56 25.12 7.93 86.32 0.68 25.80 16 13 O -0.59 -28.17 14.01 -4.42 -0.06 -28.23 16 14 N -0.64 -29.21 3.69 -864.50 -3.19 -32.40 16 15 C 0.10 4.37 7.72 83.09 0.64 5.01 16 16 C 0.22 10.99 1.41 -11.28 -0.02 10.97 16 17 O -0.58 -30.35 13.56 -148.98 -2.02 -32.37 16 18 C -0.56 -28.22 8.65 25.60 0.22 -28.00 16 19 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 20 C 0.04 1.78 5.21 84.65 0.44 2.22 16 21 N -0.91 -46.06 11.80 21.45 0.25 -45.81 16 22 Si 0.97 39.47 29.55 68.60 2.03 41.50 16 23 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 26 C 0.11 5.04 8.04 83.19 0.67 5.71 16 27 H 0.07 0.73 7.68 -2.39 -0.02 0.71 16 28 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.07 0.76 7.65 -2.39 -0.02 0.74 16 30 H 0.16 1.77 6.30 -2.91 -0.02 1.75 16 31 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.07 1.89 7.99 -2.39 -0.02 1.87 16 35 H 0.06 2.27 7.44 -2.39 -0.02 2.26 16 36 H 0.07 2.58 7.11 -2.38 -0.02 2.56 16 37 H 0.12 4.57 7.97 -2.91 -0.02 4.55 16 38 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.09 3.80 8.10 -2.39 -0.02 3.78 16 40 H 0.38 20.05 7.07 -74.06 -0.52 19.52 16 41 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 42 H 0.10 4.25 8.10 -2.39 -0.02 4.23 16 43 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -64.11 366.46 2.01 -62.10 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: 0.50 Total: 39.46 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.40 Total: 4.87 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -2.94 Total: -78.21 kcal Atomic # 8 Polarization: -66.74 SS G_CDS: -2.98 Total: -69.72 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -64.11 2.01 -62.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186802857.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.707 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds