Wall clock time and date at job start Tue Mar 31 2020 11:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47158 * 2 1 4 4 C 1.33094 * 119.99589 * 125.20256 * 3 2 1 5 5 C 1.50693 * 120.00083 * 6.77375 * 4 3 2 6 6 C 1.46948 * 119.99399 * 186.76828 * 4 3 2 7 7 O 1.21528 * 120.00713 * 0.02562 * 6 4 3 8 8 O 1.34801 * 119.99696 * 179.97438 * 6 4 3 9 9 C 1.45202 * 117.00177 * 180.02562 * 8 6 4 10 10 C 1.50697 * 109.47097 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00164 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00207 * 179.97438 * 10 9 8 13 13 C 1.39237 * 120.00314 * 184.79006 * 12 10 9 14 14 C 1.39473 * 119.83484 * 215.32868 * 13 12 10 15 15 C 1.36381 * 120.17005 * 179.76349 * 14 13 12 16 16 C 1.40864 * 119.82542 * 0.51529 * 15 14 13 17 17 C 1.41155 * 120.16316 * 179.72427 * 16 15 14 18 18 H 1.08001 * 119.99716 * 209.76225 * 17 16 15 19 19 C 1.39899 * 120.00291 * 29.75422 * 17 16 15 20 20 N 1.30875 * 119.99941 * 9.71074 * 19 17 16 21 21 Si 1.86794 * 120.00355 * 189.70791 * 19 17 16 22 22 H 1.48506 * 109.47114 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47049 * 119.99876 * 21 19 17 24 24 H 1.48493 * 109.47448 * 240.00376 * 21 19 17 25 25 C 1.40869 * 119.67240 * 359.73936 * 16 15 14 26 26 C 1.36375 * 119.83044 * 359.97438 * 25 16 15 27 27 H 1.08995 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46986 * 300.00264 * 1 2 3 29 29 H 1.09005 * 109.46660 * 59.99343 * 1 2 3 30 30 H 1.09001 * 109.46750 * 240.00234 * 2 1 3 31 31 H 1.08995 * 109.47303 * 120.00246 * 2 1 3 32 32 H 1.08001 * 120.00307 * 305.19939 * 3 2 1 33 33 H 1.09000 * 109.47095 * 270.72198 * 5 4 3 34 34 H 1.09001 * 109.47175 * 30.71321 * 5 4 3 35 35 H 1.09003 * 109.47334 * 150.71971 * 5 4 3 36 36 H 1.08993 * 109.46971 * 300.00645 * 9 8 6 37 37 H 1.09004 * 109.46609 * 60.00534 * 9 8 6 38 38 H 0.97003 * 119.99675 * 4.80032 * 12 10 9 39 39 H 1.08004 * 119.91782 * 0.02623 * 14 13 12 40 40 H 1.07996 * 120.08354 * 180.25377 * 15 14 13 41 41 H 0.97001 * 120.00083 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.08362 * 179.97438 * 25 16 15 43 43 H 1.08002 * 119.91726 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8806 1.8266 0.9419 5 6 3.4575 0.8318 1.9158 6 6 3.2548 3.2448 1.0319 7 8 2.7893 4.0472 0.2468 8 8 4.1135 3.6560 1.9862 9 6 4.4376 5.0711 2.0161 10 6 5.4035 5.3416 3.1407 11 8 5.7819 4.4313 3.8472 12 7 5.8476 6.5949 3.3609 13 6 6.8150 6.8298 4.3343 14 6 6.7738 8.0051 5.0842 15 6 7.7150 8.2399 6.0427 16 6 8.7370 7.2968 6.2670 17 6 9.7183 7.5353 7.2533 18 1 10.7127 7.1309 7.1346 19 6 9.4029 8.2958 8.3844 20 7 8.1594 8.6253 8.6255 21 14 10.7564 8.8409 9.5507 22 1 12.0655 8.3429 9.0570 23 1 10.7847 10.3241 9.6173 24 1 10.4952 8.2894 10.9044 25 6 8.7752 6.1146 5.5020 26 6 7.8236 5.8910 4.5510 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7041 2.1097 -0.7643 33 1 2.8017 0.7498 2.7826 34 1 3.5442 -0.1414 1.4325 35 1 4.4437 1.1673 2.2367 36 1 4.8924 5.3597 1.0686 37 1 3.5268 5.6491 2.1729 38 1 5.4932 7.3333 2.8412 39 1 5.9919 8.7291 4.9083 40 1 7.6794 9.1486 6.6254 41 1 7.9407 9.1522 9.4100 42 1 9.5560 5.3872 5.6681 43 1 7.8517 4.9853 3.9634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216924354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:02 Heat of formation + Delta-G solvation = -91.918045 kcal Electronic energy + Delta-G solvation = -24773.936733 eV Core-core repulsion = 20977.198053 eV Total energy + Delta-G solvation = -3796.738680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.70998 -39.54595 -37.49130 -36.89482 -36.13116 -34.48435 -33.01881 -32.28367 -29.86613 -29.50211 -28.20748 -27.29662 -25.22563 -24.49353 -22.18345 -21.60068 -20.83346 -19.80356 -18.93238 -17.59150 -17.50695 -17.30700 -16.75506 -16.43247 -16.07054 -15.21708 -14.99572 -14.72471 -14.56034 -14.09145 -13.93967 -13.52787 -13.25337 -13.03879 -12.76058 -12.65357 -12.58541 -12.55396 -12.13251 -12.06383 -11.82489 -11.74017 -11.40176 -11.27418 -11.17757 -11.04984 -10.84980 -10.76358 -10.67948 -9.99920 -9.58612 -9.46117 -9.44221 -9.22754 -8.96206 -7.58968 -6.98068 -6.72222 -4.35303 0.81357 2.25412 2.47326 2.69001 2.94336 3.05270 3.07637 3.12845 3.29033 3.67064 3.93404 4.38831 4.51110 4.62832 4.64336 4.77664 4.82240 4.86650 5.01096 5.02361 5.13777 5.34344 5.44424 5.48123 5.57043 5.64578 5.67985 5.76284 6.04335 6.11405 6.16193 6.24538 6.36439 6.69738 6.86950 7.01761 7.14455 7.23667 7.52409 7.56652 7.66928 7.82322 8.00632 8.18895 8.24806 8.55688 8.65729 8.86734 8.94871 10.20848 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035684 B = 0.001984 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.469133 B =14109.150866 C =14451.713625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.063 4.063 4 C -0.160 4.160 5 C -0.118 4.118 6 C 0.503 3.497 7 O -0.516 6.516 8 O -0.322 6.322 9 C 0.052 3.948 10 C 0.498 3.502 11 O -0.508 6.508 12 N -0.645 5.645 13 C -0.004 4.004 14 C -0.113 4.113 15 C -0.146 4.146 16 C 0.105 3.895 17 C -0.457 4.457 18 H 0.078 0.922 19 C 0.071 3.929 20 N -0.801 5.801 21 Si 0.912 3.088 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.275 1.275 25 C -0.210 4.210 26 C -0.078 4.078 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.397 0.603 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.279 0.721 42 H 0.097 0.903 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 -10.309 -14.347 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.081 4.081 4 C -0.161 4.161 5 C -0.174 4.174 6 C 0.349 3.651 7 O -0.406 6.406 8 O -0.237 6.237 9 C -0.026 4.026 10 C 0.283 3.717 11 O -0.383 6.383 12 N -0.290 5.290 13 C -0.096 4.096 14 C -0.133 4.133 15 C -0.166 4.166 16 C 0.102 3.898 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.145 4.145 20 N -0.427 5.427 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.200 1.200 25 C -0.230 4.230 26 C -0.097 4.097 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.231 0.769 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.977 -10.611 -13.875 21.179 hybrid contribution 0.209 0.949 0.267 1.008 sum -11.768 -9.661 -13.608 20.421 Atomic orbital electron populations 1.21699 0.94080 1.02248 1.02485 1.20892 0.96765 0.93026 1.03881 1.23729 0.91477 0.97941 0.94964 1.20739 1.02775 0.90581 1.01980 1.20838 1.02243 0.96728 0.97588 1.21456 0.75829 0.90021 0.77816 1.90841 1.52797 1.55715 1.41295 1.86653 1.58594 1.26813 1.51625 1.22728 1.00023 0.80124 0.99712 1.19923 0.82405 0.84052 0.85344 1.90754 1.57022 1.43600 1.46879 1.42796 1.40582 1.07739 1.37927 1.17127 0.93702 0.99928 0.98810 1.20253 0.99716 0.96268 0.97113 1.20956 0.97176 1.00567 0.97870 1.17708 0.92084 0.89380 0.90580 1.19592 0.98444 1.27915 1.02775 0.90346 1.25916 0.96139 0.93885 0.98604 1.69813 1.18308 1.29100 1.25507 0.86191 0.81564 0.78911 0.79623 1.18456 1.19809 1.19991 1.20708 1.01528 0.98290 1.02468 1.20235 0.93367 0.97507 0.98633 0.91900 0.92287 0.92307 0.89850 0.89870 0.85383 0.90813 0.90936 0.90019 0.88294 0.88383 0.76926 0.88997 0.85808 0.90971 0.88523 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.90 37.16 0.37 -0.37 16 2 C -0.11 -0.61 6.00 -27.88 -0.17 -0.77 16 3 C -0.06 -0.51 9.08 -36.10 -0.33 -0.84 16 4 C -0.16 -1.65 5.99 -102.89 -0.62 -2.27 16 5 C -0.12 -1.06 8.90 36.00 0.32 -0.74 16 6 C 0.50 6.70 7.88 34.26 0.27 6.97 16 7 O -0.52 -7.59 16.02 -19.29 -0.31 -7.90 16 8 O -0.32 -4.78 9.01 -47.45 -0.43 -5.21 16 9 C 0.05 0.70 5.96 36.00 0.21 0.91 16 10 C 0.50 8.79 7.63 -10.99 -0.08 8.71 16 11 O -0.51 -11.27 14.29 -14.11 -0.20 -11.47 16 12 N -0.65 -11.16 5.30 -9.74 -0.05 -11.21 16 13 C 0.00 -0.08 6.25 -83.57 -0.52 -0.61 16 14 C -0.11 -2.56 9.90 -39.79 -0.39 -2.95 16 15 C -0.15 -3.71 8.60 -39.26 -0.34 -4.05 16 16 C 0.11 2.80 5.54 -106.80 -0.59 2.21 16 17 C -0.46 -12.08 9.04 -37.85 -0.34 -12.42 16 18 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 19 C 0.07 1.78 5.26 -17.34 -0.09 1.69 16 20 N -0.80 -20.67 10.84 55.55 0.60 -20.07 16 21 Si 0.91 18.64 29.57 -169.99 -5.03 13.62 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.21 -5.30 9.74 -39.26 -0.38 -5.68 16 26 C -0.08 -1.85 8.57 -39.79 -0.34 -2.19 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.43 5.73 -51.93 -0.30 0.13 16 32 H 0.13 1.09 7.51 -52.49 -0.39 0.69 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.48 6.49 -51.93 -0.34 0.15 16 35 H 0.08 0.88 7.66 -51.93 -0.40 0.48 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.40 5.19 8.82 -40.82 -0.36 4.83 16 39 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 40 H 0.12 3.23 6.25 -52.49 -0.33 2.90 16 41 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 42 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 43 H 0.10 2.35 6.54 -52.49 -0.34 2.01 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -32.08 368.83 -8.69 -40.77 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.81 Total: 8.33 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.03 Total: -12.41 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.55 Total: -31.28 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.94 Total: -24.58 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.08 -8.69 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216924354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.151 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds