Wall clock time and date at job start Tue Mar 31 2020 11:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47158 * 2 1 4 4 C 1.33094 * 119.99589 * 125.20256 * 3 2 1 5 5 C 1.50693 * 120.00083 * 6.77375 * 4 3 2 6 6 C 1.46948 * 119.99399 * 186.76828 * 4 3 2 7 7 O 1.21528 * 120.00713 * 0.02562 * 6 4 3 8 8 O 1.34801 * 119.99696 * 179.97438 * 6 4 3 9 9 C 1.45202 * 117.00177 * 180.02562 * 8 6 4 10 10 C 1.50697 * 109.47097 * 179.97438 * 9 8 6 11 11 O 1.21286 * 120.00164 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00207 * 179.97438 * 10 9 8 13 13 C 1.39237 * 120.00314 * 184.79006 * 12 10 9 14 14 C 1.39473 * 119.83484 * 215.32868 * 13 12 10 15 15 C 1.36381 * 120.17005 * 179.76349 * 14 13 12 16 16 C 1.40864 * 119.82542 * 0.51529 * 15 14 13 17 17 C 1.41155 * 120.16316 * 179.72427 * 16 15 14 18 18 H 1.08001 * 119.99716 * 209.76225 * 17 16 15 19 19 C 1.39899 * 120.00291 * 29.75422 * 17 16 15 20 20 N 1.30875 * 119.99941 * 9.71074 * 19 17 16 21 21 Si 1.86794 * 120.00355 * 189.70791 * 19 17 16 22 22 H 1.48506 * 109.47114 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47049 * 119.99876 * 21 19 17 24 24 H 1.48493 * 109.47448 * 240.00376 * 21 19 17 25 25 C 1.40869 * 119.67240 * 359.73936 * 16 15 14 26 26 C 1.36375 * 119.83044 * 359.97438 * 25 16 15 27 27 H 1.08995 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46986 * 300.00264 * 1 2 3 29 29 H 1.09005 * 109.46660 * 59.99343 * 1 2 3 30 30 H 1.09001 * 109.46750 * 240.00234 * 2 1 3 31 31 H 1.08995 * 109.47303 * 120.00246 * 2 1 3 32 32 H 1.08001 * 120.00307 * 305.19939 * 3 2 1 33 33 H 1.09000 * 109.47095 * 270.72198 * 5 4 3 34 34 H 1.09001 * 109.47175 * 30.71321 * 5 4 3 35 35 H 1.09003 * 109.47334 * 150.71971 * 5 4 3 36 36 H 1.08993 * 109.46971 * 300.00645 * 9 8 6 37 37 H 1.09004 * 109.46609 * 60.00534 * 9 8 6 38 38 H 0.97003 * 119.99675 * 4.80032 * 12 10 9 39 39 H 1.08004 * 119.91782 * 0.02623 * 14 13 12 40 40 H 1.07996 * 120.08354 * 180.25377 * 15 14 13 41 41 H 0.97001 * 120.00083 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.08362 * 179.97438 * 25 16 15 43 43 H 1.08002 * 119.91726 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8806 1.8266 0.9419 5 6 3.4575 0.8318 1.9158 6 6 3.2548 3.2448 1.0319 7 8 2.7893 4.0472 0.2468 8 8 4.1135 3.6560 1.9862 9 6 4.4376 5.0711 2.0161 10 6 5.4035 5.3416 3.1407 11 8 5.7819 4.4313 3.8472 12 7 5.8476 6.5949 3.3609 13 6 6.8150 6.8298 4.3343 14 6 6.7738 8.0051 5.0842 15 6 7.7150 8.2399 6.0427 16 6 8.7370 7.2968 6.2670 17 6 9.7183 7.5353 7.2533 18 1 10.7127 7.1309 7.1346 19 6 9.4029 8.2958 8.3844 20 7 8.1594 8.6253 8.6255 21 14 10.7564 8.8409 9.5507 22 1 12.0655 8.3429 9.0570 23 1 10.7847 10.3241 9.6173 24 1 10.4952 8.2894 10.9044 25 6 8.7752 6.1146 5.5020 26 6 7.8236 5.8910 4.5510 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.7041 2.1097 -0.7643 33 1 2.8017 0.7498 2.7826 34 1 3.5442 -0.1414 1.4325 35 1 4.4437 1.1673 2.2367 36 1 4.8924 5.3597 1.0686 37 1 3.5268 5.6491 2.1729 38 1 5.4932 7.3333 2.8412 39 1 5.9919 8.7291 4.9083 40 1 7.6794 9.1486 6.6254 41 1 7.9407 9.1522 9.4100 42 1 9.5560 5.3872 5.6681 43 1 7.8517 4.9853 3.9634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216924354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:01 Heat of formation + Delta-G solvation = -109.083052 kcal Electronic energy + Delta-G solvation = -24774.681063 eV Core-core repulsion = 20977.198053 eV Total energy + Delta-G solvation = -3797.483011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82296 -41.02846 -39.14221 -37.91034 -37.03679 -36.21087 -34.80061 -32.87211 -31.59403 -31.26555 -29.67758 -27.96350 -26.75174 -25.52021 -23.57639 -22.88992 -22.47306 -21.38409 -19.81845 -19.28398 -18.84503 -18.44278 -17.86428 -17.73839 -17.42718 -17.01538 -16.27010 -15.71943 -15.65433 -15.20010 -15.13940 -14.95106 -14.53590 -14.25659 -14.01611 -14.00827 -13.79714 -13.65463 -13.41482 -13.27075 -13.04012 -12.87062 -12.79808 -12.75508 -12.48590 -12.29738 -11.95629 -11.80286 -11.75090 -11.55413 -11.43150 -11.24142 -10.93819 -10.69770 -10.13312 -9.50322 -8.84737 -8.58342 -6.32415 0.00941 0.71935 1.10858 1.21629 1.38962 1.40418 1.54940 1.67269 1.78997 2.22608 2.40166 2.75928 3.52185 3.60254 3.69543 3.86683 3.96798 4.00667 4.08336 4.22683 4.37289 4.42227 4.45299 4.63113 4.74180 4.81470 4.89917 4.99797 5.05227 5.08060 5.10344 5.11440 5.19308 5.28455 5.33407 5.38638 5.45298 5.52851 5.64223 5.84881 5.98364 6.07597 6.34320 6.50759 6.61941 6.65069 6.92485 6.95592 7.25423 8.36708 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035684 B = 0.001984 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.469133 B =14109.150866 C =14451.713625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.034 4.034 4 C -0.190 4.190 5 C -0.112 4.112 6 C 0.501 3.499 7 O -0.536 6.536 8 O -0.343 6.343 9 C 0.059 3.941 10 C 0.501 3.499 11 O -0.557 6.557 12 N -0.635 5.635 13 C 0.012 3.988 14 C -0.111 4.111 15 C -0.163 4.163 16 C 0.073 3.927 17 C -0.494 4.494 18 H 0.075 0.925 19 C 0.031 3.969 20 N -0.833 5.833 21 Si 0.987 3.013 22 H -0.259 1.259 23 H -0.262 1.262 24 H -0.269 1.269 25 C -0.227 4.227 26 C -0.089 4.089 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.422 0.578 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.288 0.712 42 H 0.096 0.904 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 -10.674 -15.646 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.053 4.053 4 C -0.191 4.191 5 C -0.168 4.168 6 C 0.349 3.651 7 O -0.428 6.428 8 O -0.258 6.258 9 C -0.018 4.018 10 C 0.288 3.712 11 O -0.435 6.435 12 N -0.282 5.282 13 C -0.082 4.082 14 C -0.131 4.131 15 C -0.183 4.183 16 C 0.071 3.929 17 C -0.524 4.524 18 H 0.093 0.907 19 C -0.183 4.183 20 N -0.460 5.460 21 Si 0.808 3.192 22 H -0.183 1.183 23 H -0.186 1.186 24 H -0.193 1.193 25 C -0.247 4.247 26 C -0.109 4.109 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.260 0.740 39 H 0.145 0.855 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.485 -10.958 -15.218 23.098 hybrid contribution 0.507 0.968 0.496 1.200 sum -12.978 -9.991 -14.722 22.023 Atomic orbital electron populations 1.21711 0.93451 1.03145 1.02214 1.21007 0.97126 0.91225 1.05155 1.24024 0.88976 0.99214 0.93055 1.20804 1.04988 0.89360 1.03937 1.20800 1.00781 0.97520 0.97694 1.21970 0.75035 0.91051 0.76999 1.90819 1.53641 1.56419 1.41951 1.86651 1.59273 1.27361 1.52513 1.22712 1.00041 0.80371 0.98656 1.20628 0.82032 0.83104 0.85458 1.90741 1.58835 1.45056 1.48826 1.42658 1.39525 1.08923 1.37100 1.17177 0.93549 0.98786 0.98645 1.20523 0.99633 0.97044 0.95883 1.20961 0.98122 1.00208 0.99019 1.18036 0.93187 0.90233 0.91467 1.19814 0.98521 1.29992 1.04101 0.90706 1.26759 0.98538 0.93246 0.99740 1.69860 1.20038 1.29606 1.26470 0.85076 0.78196 0.78799 0.77112 1.18297 1.18609 1.19347 1.20836 1.02278 0.98302 1.03242 1.20358 0.93827 0.98104 0.98632 0.90471 0.93140 0.92055 0.87890 0.89173 0.85631 0.90676 0.88457 0.92424 0.85644 0.85746 0.74043 0.85499 0.86932 0.90169 0.88563 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.90 71.98 0.71 -0.39 16 2 C -0.11 -0.90 6.00 29.85 0.18 -0.72 16 3 C -0.03 -0.49 9.08 24.53 0.22 -0.27 16 4 C -0.19 -3.70 5.99 -18.74 -0.11 -3.82 16 5 C -0.11 -1.91 8.90 71.23 0.63 -1.27 16 6 C 0.50 12.90 7.88 70.10 0.55 13.45 16 7 O -0.54 -15.05 16.02 19.74 0.32 -14.73 16 8 O -0.34 -9.92 9.01 -50.74 -0.46 -10.38 16 9 C 0.06 1.48 5.96 71.24 0.42 1.90 16 10 C 0.50 17.08 7.63 87.66 0.67 17.74 16 11 O -0.56 -24.83 14.29 15.75 0.23 -24.60 16 12 N -0.64 -20.77 5.30 -303.11 -1.61 -22.38 16 13 C 0.01 0.50 6.25 38.56 0.24 0.74 16 14 C -0.11 -4.92 9.90 22.13 0.22 -4.71 16 15 C -0.16 -8.46 8.60 22.48 0.19 -8.27 16 16 C 0.07 4.05 5.54 -21.28 -0.12 3.93 16 17 C -0.49 -27.09 9.04 23.39 0.21 -26.88 16 18 H 0.07 3.97 7.86 -2.91 -0.02 3.95 16 19 C 0.03 1.56 5.26 85.24 0.45 2.00 16 20 N -0.83 -43.76 10.84 21.82 0.24 -43.53 16 21 Si 0.99 38.57 29.57 68.60 2.03 40.60 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 24 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 25 C -0.23 -11.88 9.74 22.48 0.22 -11.66 16 26 C -0.09 -4.33 8.57 22.13 0.19 -4.14 16 27 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.67 5.73 -2.39 -0.01 0.65 16 32 H 0.13 1.89 7.51 -2.91 -0.02 1.87 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 1.11 6.49 -2.39 -0.02 1.09 16 35 H 0.06 1.26 7.66 -2.39 -0.02 1.24 16 36 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.12 2.49 8.14 -2.39 -0.02 2.48 16 38 H 0.42 9.74 8.82 -92.71 -0.82 8.92 16 39 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.11 6.03 6.25 -2.91 -0.02 6.01 16 41 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 42 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 43 H 0.10 4.85 6.54 -2.91 -0.02 4.83 16 Total: -1.00 -72.07 368.83 5.85 -66.22 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.22 Total: 31.15 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: 4.88 Total: -22.35 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -1.37 Total: -65.91 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: 0.08 Total: -49.71 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -72.07 5.85 -66.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216924354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.866 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds