Wall clock time and date at job start Tue Mar 31 2020 11:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 113.00364 * 2 1 4 4 N 1.46500 * 109.47401 * 50.33088 * 3 2 1 5 5 C 1.34768 * 120.00399 * 179.97438 * 4 3 2 6 6 O 1.21722 * 120.00133 * 0.02562 * 5 4 3 7 7 C 1.46260 * 120.00270 * 179.97438 * 5 4 3 8 8 C 1.35023 * 119.99995 * 186.78965 * 7 5 4 9 9 C 1.46957 * 119.99888 * 11.39096 * 8 7 5 10 10 C 1.40023 * 120.10644 * 43.45716 * 9 8 7 11 11 C 1.37598 * 119.89730 * 179.97438 * 10 9 8 12 12 C 1.39169 * 120.10360 * 0.27071 * 11 10 9 13 13 O 1.35572 * 119.89756 * 179.70203 * 12 11 10 14 14 C 1.34779 * 117.00059 * 5.79643 * 13 12 11 15 15 H 1.07997 * 119.99779 * 5.28958 * 14 13 12 16 16 C 1.38721 * 119.99860 * 185.29239 * 14 13 12 17 17 N 1.31510 * 119.99949 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99934 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47097 * 89.99957 * 18 16 14 20 20 H 1.48504 * 109.46693 * 209.99670 * 18 16 14 21 21 H 1.48493 * 109.47055 * 329.99700 * 18 16 14 22 22 C 1.39183 * 120.20245 * 359.45325 * 12 11 10 23 23 C 1.37598 * 120.09881 * 0.55044 * 22 12 11 24 24 C 1.54040 * 113.81376 * 131.82799 * 2 1 3 25 25 O 1.44448 * 85.42495 * 91.80574 * 24 2 1 26 26 C 1.44177 * 93.38076 * 24.09024 * 25 24 2 27 27 H 1.09003 * 109.47190 * 59.99686 * 1 2 3 28 28 H 1.08994 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46825 * 300.00108 * 1 2 3 30 30 H 1.08997 * 109.47079 * 290.33406 * 3 2 1 31 31 H 1.09006 * 109.47189 * 170.33436 * 3 2 1 32 32 H 0.96999 * 119.99481 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.99805 * 6.79947 * 7 5 4 34 34 H 1.08002 * 119.99620 * 191.38055 * 8 7 5 35 35 H 1.08001 * 120.04772 * 359.95763 * 10 9 8 36 36 H 1.08003 * 119.94284 * 179.97438 * 11 10 9 37 37 H 0.96995 * 119.99804 * 179.97438 * 17 16 14 38 38 H 1.07995 * 119.94831 * 180.27339 * 22 12 11 39 39 H 1.08003 * 120.04893 * 179.74897 * 23 22 12 40 40 H 1.09000 * 113.86056 * 205.90982 * 24 2 1 41 41 H 1.08996 * 113.86718 * 337.61544 * 24 2 1 42 42 H 1.08998 * 113.85934 * 221.76901 * 26 25 24 43 43 H 1.08998 * 113.86756 * 90.06283 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1279 1.4083 0.0000 4 7 1.5072 2.2024 1.0632 5 6 1.8806 3.4833 1.2531 6 8 2.7333 3.9806 0.5409 7 6 1.2605 4.2763 2.3141 8 6 1.5322 5.5948 2.4182 9 6 2.2423 6.2865 1.3333 10 6 1.8942 6.0433 -0.0010 11 6 2.5616 6.6937 -1.0134 12 6 3.5848 7.5878 -0.7131 13 8 4.2437 8.2218 -1.7141 14 6 3.7810 8.0344 -2.9661 15 1 2.8729 7.4727 -3.1276 16 6 4.4714 8.5629 -4.0470 17 7 4.0203 8.3795 -5.2686 18 14 6.0419 9.5349 -3.7673 19 1 7.2058 8.6130 -3.7923 20 1 6.1924 10.5514 -4.8395 21 1 5.9758 10.2132 -2.4480 22 6 3.9305 7.8371 0.6119 23 6 3.2687 7.1913 1.6309 24 6 2.1519 -0.9398 1.0501 25 8 2.1469 -1.9297 -0.0019 26 6 2.1520 -0.9398 -1.0501 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.9412 1.8822 -0.9636 31 1 3.2024 1.3468 0.1726 32 1 0.8279 1.8060 1.6309 33 1 0.5854 3.8071 3.0146 34 1 1.2274 6.1410 3.2986 35 1 1.1034 5.3460 -0.2351 36 1 2.2940 6.5063 -2.0428 37 1 4.5028 8.7494 -6.0244 38 1 4.7222 8.5351 0.8404 39 1 3.5403 7.3823 2.6586 40 1 3.1503 -0.6428 1.3714 41 1 1.4868 -1.1742 1.8812 42 1 1.4868 -1.1743 -1.8811 43 1 3.1503 -0.6429 -1.3715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254998003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:23 Heat of formation + Delta-G solvation = -18.789465 kcal Electronic energy + Delta-G solvation = -25777.795549 eV Core-core repulsion = 21984.227962 eV Total energy + Delta-G solvation = -3793.567587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.11942 -39.69367 -38.81420 -36.72081 -35.09880 -33.09763 -32.31887 -31.89805 -30.16753 -28.53944 -27.41828 -26.93304 -25.69957 -25.01766 -22.88820 -21.80196 -20.90042 -19.67487 -18.92516 -17.91815 -17.51079 -16.85492 -16.61229 -16.38849 -15.87883 -15.33124 -15.09827 -14.64294 -14.34270 -14.18166 -13.90853 -13.79512 -13.65094 -13.38457 -13.18787 -12.93049 -12.74784 -12.45163 -12.40323 -12.28049 -12.15607 -11.86604 -11.43746 -11.06663 -10.94235 -10.78991 -10.77460 -10.68754 -10.14356 -10.01648 -9.57051 -9.42764 -9.26575 -9.01296 -8.75799 -7.98877 -7.00707 -6.42476 -4.06051 1.16998 2.32333 2.60696 3.18094 3.22727 3.26831 3.33699 3.41113 3.58664 3.83204 4.23984 4.31278 4.53050 4.62076 4.72330 4.90067 4.98855 5.01381 5.11297 5.13134 5.15311 5.29461 5.36845 5.38124 5.52249 5.55190 5.62924 5.66727 5.74230 5.75845 5.78201 5.84905 6.18044 6.22310 6.35112 6.45634 6.54783 6.63545 6.91780 7.16022 7.29343 7.41517 7.60876 7.66680 7.83990 8.06038 8.49019 8.92727 9.56877 10.64976 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003062 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.648560 B = 9142.134210 C =10565.319885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.143 4.143 3 C 0.129 3.871 4 N -0.734 5.734 5 C 0.537 3.463 6 O -0.511 6.511 7 C -0.263 4.263 8 C 0.025 3.975 9 C -0.182 4.182 10 C 0.015 3.985 11 C -0.231 4.231 12 C 0.177 3.823 13 O -0.213 6.213 14 C -0.387 4.387 15 H 0.107 0.893 16 C 0.063 3.937 17 N -0.877 5.877 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.210 4.210 23 C -0.047 4.047 24 C 0.043 3.957 25 O -0.381 6.381 26 C 0.048 3.952 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.395 0.605 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.280 0.720 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 -14.975 14.704 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.144 4.144 3 C 0.005 3.995 4 N -0.388 5.388 5 C 0.327 3.673 6 O -0.387 6.387 7 C -0.284 4.284 8 C 0.005 3.995 9 C -0.183 4.183 10 C -0.004 4.004 11 C -0.251 4.251 12 C 0.124 3.876 13 O -0.117 6.117 14 C -0.462 4.462 15 H 0.124 0.876 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.229 4.229 23 C -0.066 4.066 24 C -0.034 4.034 25 O -0.299 6.299 26 C -0.029 4.029 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.229 0.771 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.148 0.852 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.949 -14.701 13.898 21.391 hybrid contribution 0.231 0.136 0.158 0.311 sum -6.718 -14.566 14.057 21.328 Atomic orbital electron populations 1.21557 0.91560 1.02676 1.02768 1.23966 0.98093 0.95205 0.97113 1.21307 0.97320 0.88813 0.92024 1.45965 1.43658 1.12927 1.36261 1.18514 0.83190 0.81290 0.84316 1.91005 1.31785 1.69724 1.46186 1.22620 1.07633 0.95328 1.02848 1.22338 0.89221 0.92993 0.94950 1.18359 1.03161 1.04182 0.92562 1.20600 0.96029 0.92594 0.91155 1.21069 1.01204 1.02715 1.00077 1.19293 0.90392 0.89673 0.88262 1.83515 1.51310 1.61345 1.15491 1.20820 1.10281 1.36439 0.78676 0.87559 1.24495 0.98916 0.97041 0.93570 1.69626 1.40036 1.43868 0.97909 0.86177 0.82081 0.79845 0.78804 1.19855 1.20739 1.18267 1.19994 1.05854 1.07090 0.89957 1.20630 0.94488 0.94038 0.97412 1.24158 1.00658 0.86385 0.92150 1.89721 1.95799 1.27509 1.16893 1.24021 1.00904 0.85845 0.92119 0.91341 0.91474 0.91892 0.90871 0.91179 0.77084 0.86098 0.85919 0.88289 0.85236 0.91006 0.86648 0.86996 0.89813 0.89111 0.88712 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.82 37.16 0.33 -0.51 16 2 C -0.14 -1.10 1.12 -153.43 -0.17 -1.27 16 3 C 0.13 1.32 5.15 -4.04 -0.02 1.30 16 4 N -0.73 -7.46 5.31 -61.76 -0.33 -7.79 16 5 C 0.54 7.53 6.77 -13.04 -0.09 7.44 16 6 O -0.51 -9.68 12.17 5.17 0.06 -9.62 16 7 C -0.26 -3.10 9.90 -37.50 -0.37 -3.47 16 8 C 0.02 0.32 9.80 -37.19 -0.36 -0.04 16 9 C -0.18 -3.20 4.54 -105.03 -0.48 -3.68 16 10 C 0.01 0.29 6.59 -39.15 -0.26 0.04 16 11 C -0.23 -5.35 9.11 -39.47 -0.36 -5.71 16 12 C 0.18 4.29 6.66 -38.88 -0.26 4.03 16 13 O -0.21 -5.78 8.57 0.74 0.01 -5.78 16 14 C -0.39 -11.15 9.90 30.91 0.31 -10.84 16 15 H 0.11 3.15 5.50 -52.49 -0.29 2.86 16 16 C 0.06 1.80 5.49 -17.51 -0.10 1.71 16 17 N -0.88 -25.56 13.96 55.48 0.77 -24.79 16 18 Si 0.91 21.97 28.62 -169.99 -4.86 17.10 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.21 -4.37 9.97 -39.46 -0.39 -4.76 16 23 C -0.05 -0.84 9.78 -39.14 -0.38 -1.23 16 24 C 0.04 0.33 8.37 37.64 0.32 0.65 16 25 O -0.38 -3.84 12.38 -35.23 -0.44 -4.28 16 26 C 0.05 0.40 8.37 37.64 0.31 0.71 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.06 0.34 6.65 -51.92 -0.35 -0.01 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.79 7.98 -51.93 -0.41 0.38 16 32 H 0.39 2.83 6.90 -40.82 -0.28 2.55 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.10 1.84 7.01 -52.49 -0.37 1.47 16 36 H 0.13 3.16 5.69 -52.48 -0.30 2.86 16 37 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.08 0.63 7.99 -51.93 -0.41 0.22 16 41 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 42 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -33.45 359.61 -7.11 -40.56 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.76 Total: 4.82 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -1.98 Total: -15.65 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.45 Total: -32.58 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.37 Total: -19.67 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.86 Total: 17.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.45 -7.11 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254998003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.768 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds