Wall clock time and date at job start Tue Mar 31 2020 11:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 113.00364 * 2 1 4 4 N 1.46500 * 109.47401 * 50.33088 * 3 2 1 5 5 C 1.34768 * 120.00399 * 179.97438 * 4 3 2 6 6 O 1.21722 * 120.00133 * 0.02562 * 5 4 3 7 7 C 1.46260 * 120.00270 * 179.97438 * 5 4 3 8 8 C 1.35023 * 119.99995 * 186.78965 * 7 5 4 9 9 C 1.46957 * 119.99888 * 11.39096 * 8 7 5 10 10 C 1.40023 * 120.10644 * 43.45716 * 9 8 7 11 11 C 1.37598 * 119.89730 * 179.97438 * 10 9 8 12 12 C 1.39169 * 120.10360 * 0.27071 * 11 10 9 13 13 O 1.35572 * 119.89756 * 179.70203 * 12 11 10 14 14 C 1.34779 * 117.00059 * 5.79643 * 13 12 11 15 15 H 1.07997 * 119.99779 * 5.28958 * 14 13 12 16 16 C 1.38721 * 119.99860 * 185.29239 * 14 13 12 17 17 N 1.31510 * 119.99949 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99934 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47097 * 89.99957 * 18 16 14 20 20 H 1.48504 * 109.46693 * 209.99670 * 18 16 14 21 21 H 1.48493 * 109.47055 * 329.99700 * 18 16 14 22 22 C 1.39183 * 120.20245 * 359.45325 * 12 11 10 23 23 C 1.37598 * 120.09881 * 0.55044 * 22 12 11 24 24 C 1.54040 * 113.81376 * 131.82799 * 2 1 3 25 25 O 1.44448 * 85.42495 * 91.80574 * 24 2 1 26 26 C 1.44177 * 93.38076 * 24.09024 * 25 24 2 27 27 H 1.09003 * 109.47190 * 59.99686 * 1 2 3 28 28 H 1.08994 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46825 * 300.00108 * 1 2 3 30 30 H 1.08997 * 109.47079 * 290.33406 * 3 2 1 31 31 H 1.09006 * 109.47189 * 170.33436 * 3 2 1 32 32 H 0.96999 * 119.99481 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.99805 * 6.79947 * 7 5 4 34 34 H 1.08002 * 119.99620 * 191.38055 * 8 7 5 35 35 H 1.08001 * 120.04772 * 359.95763 * 10 9 8 36 36 H 1.08003 * 119.94284 * 179.97438 * 11 10 9 37 37 H 0.96995 * 119.99804 * 179.97438 * 17 16 14 38 38 H 1.07995 * 119.94831 * 180.27339 * 22 12 11 39 39 H 1.08003 * 120.04893 * 179.74897 * 23 22 12 40 40 H 1.09000 * 113.86056 * 205.90982 * 24 2 1 41 41 H 1.08996 * 113.86718 * 337.61544 * 24 2 1 42 42 H 1.08998 * 113.85934 * 221.76901 * 26 25 24 43 43 H 1.08998 * 113.86756 * 90.06283 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1279 1.4083 0.0000 4 7 1.5072 2.2024 1.0632 5 6 1.8806 3.4833 1.2531 6 8 2.7333 3.9806 0.5409 7 6 1.2605 4.2763 2.3141 8 6 1.5322 5.5948 2.4182 9 6 2.2423 6.2865 1.3333 10 6 1.8942 6.0433 -0.0010 11 6 2.5616 6.6937 -1.0134 12 6 3.5848 7.5878 -0.7131 13 8 4.2437 8.2218 -1.7141 14 6 3.7810 8.0344 -2.9661 15 1 2.8729 7.4727 -3.1276 16 6 4.4714 8.5629 -4.0470 17 7 4.0203 8.3795 -5.2686 18 14 6.0419 9.5349 -3.7673 19 1 7.2058 8.6130 -3.7923 20 1 6.1924 10.5514 -4.8395 21 1 5.9758 10.2132 -2.4480 22 6 3.9305 7.8371 0.6119 23 6 3.2687 7.1913 1.6309 24 6 2.1519 -0.9398 1.0501 25 8 2.1469 -1.9297 -0.0019 26 6 2.1520 -0.9398 -1.0501 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.9412 1.8822 -0.9636 31 1 3.2024 1.3468 0.1726 32 1 0.8279 1.8060 1.6309 33 1 0.5854 3.8071 3.0146 34 1 1.2274 6.1410 3.2986 35 1 1.1034 5.3460 -0.2351 36 1 2.2940 6.5063 -2.0428 37 1 4.5028 8.7494 -6.0244 38 1 4.7222 8.5351 0.8404 39 1 3.5403 7.3823 2.6586 40 1 3.1503 -0.6428 1.3714 41 1 1.4868 -1.1742 1.8812 42 1 1.4868 -1.1743 -1.8811 43 1 3.1503 -0.6429 -1.3715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254998003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:22 Heat of formation + Delta-G solvation = -42.559765 kcal Electronic energy + Delta-G solvation = -25778.826307 eV Core-core repulsion = 21984.227962 eV Total energy + Delta-G solvation = -3794.598345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.85309 -41.06307 -40.34511 -38.30780 -36.13862 -34.64858 -34.08618 -32.76597 -31.79953 -29.96160 -28.22193 -27.58319 -27.25819 -26.28104 -24.20556 -23.40165 -22.27600 -20.68951 -19.87759 -19.71355 -19.20299 -18.15124 -17.45139 -17.11232 -16.79145 -16.55325 -16.42541 -15.98515 -15.85959 -15.65478 -15.56804 -15.05919 -14.71473 -14.60390 -14.42322 -14.24287 -14.01984 -13.94620 -13.80418 -13.33750 -13.09055 -12.99611 -12.65574 -12.61115 -12.48131 -12.30506 -11.94808 -11.72168 -11.50644 -11.35490 -11.03953 -10.75045 -10.63941 -10.44834 -10.05040 -9.57480 -8.61518 -8.53089 -6.24079 -0.02467 0.69476 1.10318 1.28417 1.35092 1.50161 2.26230 2.29133 2.48367 2.67405 2.79023 3.11250 3.13844 3.17995 3.63477 3.83923 3.99734 4.04845 4.09793 4.12361 4.20400 4.36158 4.51275 4.54781 4.56890 4.63896 4.67523 4.72190 4.81059 4.86689 4.90758 4.98993 5.08267 5.11898 5.18955 5.26016 5.28246 5.33306 5.50133 5.51418 5.65312 5.77231 5.85571 5.90504 6.27677 6.70035 6.80881 7.44512 7.56314 8.58946 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.003062 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.648560 B = 9142.134210 C =10565.319885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.130 4.130 3 C 0.132 3.868 4 N -0.712 5.712 5 C 0.523 3.477 6 O -0.570 6.570 7 C -0.230 4.230 8 C 0.004 3.996 9 C -0.153 4.153 10 C 0.009 3.991 11 C -0.252 4.252 12 C 0.131 3.869 13 O -0.242 6.242 14 C -0.401 4.401 15 H 0.075 0.925 16 C 0.010 3.990 17 N -0.923 5.923 18 Si 0.973 3.027 19 H -0.268 1.268 20 H -0.263 1.263 21 H -0.261 1.261 22 C -0.210 4.210 23 C -0.047 4.047 24 C 0.045 3.955 25 O -0.402 6.402 26 C 0.041 3.959 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.415 0.585 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.286 0.714 38 H 0.129 0.871 39 H 0.163 0.837 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.940 -16.163 19.507 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.131 4.131 3 C 0.008 3.992 4 N -0.365 5.365 5 C 0.313 3.687 6 O -0.450 6.450 7 C -0.250 4.250 8 C -0.016 4.016 9 C -0.154 4.154 10 C -0.010 4.010 11 C -0.271 4.271 12 C 0.082 3.918 13 O -0.149 6.149 14 C -0.477 4.477 15 H 0.092 0.908 16 C -0.189 4.189 17 N -0.563 5.563 18 Si 0.795 3.205 19 H -0.193 1.193 20 H -0.187 1.187 21 H -0.185 1.185 22 C -0.229 4.229 23 C -0.065 4.065 24 C -0.032 4.032 25 O -0.321 6.321 26 C -0.036 4.036 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.253 0.747 33 H 0.193 0.807 34 H 0.191 0.809 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.147 0.853 39 H 0.180 0.820 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.122 0.878 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.136 -15.953 18.767 25.940 hybrid contribution 0.344 0.133 -0.982 1.049 sum -7.791 -15.819 17.785 25.046 Atomic orbital electron populations 1.21575 0.90184 1.03237 1.03380 1.23876 0.98941 0.93078 0.97188 1.21231 0.96877 0.90143 0.90989 1.45796 1.43105 1.11884 1.35763 1.19197 0.82707 0.82341 0.84406 1.91014 1.34516 1.71023 1.48478 1.23090 1.05674 0.94800 1.01456 1.22623 0.89914 0.93810 0.95212 1.18952 1.01488 1.02069 0.92883 1.20729 0.96088 0.92253 0.91884 1.21016 1.02443 1.04093 0.99594 1.19830 0.91582 0.91221 0.89184 1.83451 1.52713 1.63820 1.14956 1.20695 1.09943 1.36755 0.80299 0.90776 1.25334 1.02259 0.98161 0.93113 1.69712 1.41907 1.45972 0.98727 0.85187 0.77797 0.78649 0.78866 1.19287 1.18711 1.18487 1.20378 1.06223 1.07353 0.88968 1.21200 0.93396 0.92959 0.98933 1.24302 1.01149 0.85449 0.92267 1.89705 1.95888 1.28629 1.17915 1.24148 1.01212 0.85779 0.92463 0.91903 0.90959 0.90103 0.93163 0.92581 0.74730 0.80692 0.80886 0.87499 0.88603 0.90469 0.85305 0.81990 0.89916 0.86875 0.87754 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.82 71.98 0.63 -0.68 16 2 C -0.13 -1.79 1.12 -51.48 -0.06 -1.85 16 3 C 0.13 2.59 5.15 86.38 0.44 3.04 16 4 N -0.71 -12.39 5.31 -467.51 -2.48 -14.88 16 5 C 0.52 13.13 6.77 86.33 0.58 13.71 16 6 O -0.57 -21.29 12.17 -4.42 -0.05 -21.34 16 7 C -0.23 -4.05 9.90 23.62 0.23 -3.81 16 8 C 0.00 0.07 9.80 23.82 0.23 0.31 16 9 C -0.15 -4.97 4.54 -20.13 -0.09 -5.06 16 10 C 0.01 0.36 6.59 22.55 0.15 0.50 16 11 C -0.25 -12.55 9.11 22.34 0.20 -12.34 16 12 C 0.13 6.72 6.66 22.72 0.15 6.87 16 13 O -0.24 -14.08 8.57 -20.26 -0.17 -14.25 16 14 C -0.40 -25.09 9.90 67.94 0.67 -24.42 16 15 H 0.07 4.93 5.50 -2.91 -0.02 4.91 16 16 C 0.01 0.59 5.49 84.86 0.47 1.05 16 17 N -0.92 -57.12 13.96 21.62 0.30 -56.81 16 18 Si 0.97 47.26 28.62 68.60 1.96 49.23 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.26 -12.57 7.11 99.48 0.71 -11.87 16 22 C -0.21 -8.69 9.97 22.35 0.22 -8.46 16 23 C -0.05 -1.54 9.78 22.55 0.22 -1.32 16 24 C 0.04 0.59 8.37 72.30 0.61 1.19 16 25 O -0.40 -7.57 12.38 -148.98 -1.84 -9.41 16 26 C 0.04 0.65 8.37 72.30 0.60 1.26 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 29 H 0.08 0.53 6.65 -2.38 -0.02 0.52 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.28 7.98 -2.38 -0.02 1.26 16 32 H 0.41 3.99 6.90 -92.71 -0.64 3.35 16 33 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.11 4.00 7.01 -2.91 -0.02 3.98 16 36 H 0.10 5.30 5.69 -2.91 -0.02 5.28 16 37 H 0.29 16.11 8.31 -92.71 -0.77 15.34 16 38 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 39 H 0.16 3.70 8.06 -2.91 -0.02 3.67 16 40 H 0.08 1.10 7.99 -2.39 -0.02 1.08 16 41 H 0.11 0.98 8.10 -2.39 -0.02 0.96 16 42 H 0.10 1.42 8.10 -2.39 -0.02 1.40 16 43 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 Total: -1.00 -81.82 359.61 3.38 -78.43 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.39 Total: 19.05 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 5.28 Total: -30.02 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -2.18 Total: -71.69 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -2.07 Total: -45.01 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.96 Total: 49.23 kcal Total: -81.82 3.38 -78.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254998003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.875 kcal (2) G-P(sol) polarization free energy of solvation -81.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds