Wall clock time and date at job start Tue Mar 31 2020 11:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31312 * 122.07441 * 2 1 4 4 C 1.30219 * 117.03972 * 179.97438 * 3 2 1 5 5 C 1.47872 * 125.47305 * 180.02562 * 4 3 2 6 6 C 1.39975 * 120.55564 * 0.03065 * 5 4 3 7 7 C 1.38365 * 118.29080 * 179.97438 * 6 5 4 8 8 C 1.38341 * 119.30493 * 0.02562 * 7 6 5 9 9 N 1.31905 * 121.07593 * 359.97438 * 8 7 6 10 10 C 1.31714 * 121.87452 * 359.72676 * 9 8 7 11 11 S 1.76172 * 109.05580 * 359.74120 * 4 3 2 12 12 C 1.33721 * 122.07553 * 179.97438 * 2 1 3 13 13 C 1.50692 * 125.89092 * 0.02562 * 12 2 1 14 14 H 1.09006 * 109.47720 * 14.99991 * 13 12 2 15 15 C 1.53006 * 109.47219 * 254.99887 * 13 12 2 16 16 N 1.46905 * 109.47193 * 134.99922 * 13 12 2 17 17 C 1.46902 * 110.99800 * 204.99693 * 16 13 12 18 18 C 1.53006 * 109.46626 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.46866 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47141 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47494 * 119.99680 * 23 21 19 26 26 H 1.48505 * 109.47047 * 239.99860 * 23 21 19 27 27 H 1.08999 * 109.47305 * 270.01928 * 1 2 3 28 28 H 1.09001 * 109.47636 * 30.01889 * 1 2 3 29 29 H 1.09000 * 109.47783 * 150.02139 * 1 2 3 30 30 H 1.07998 * 120.85330 * 359.95711 * 6 5 4 31 31 H 1.07999 * 120.34441 * 180.02562 * 7 6 5 32 32 H 1.08002 * 119.45961 * 179.97438 * 8 7 6 33 33 H 1.07997 * 119.71348 * 180.29138 * 10 9 8 34 34 H 1.09002 * 109.47182 * 180.02562 * 15 13 12 35 35 H 1.08998 * 109.47049 * 300.00332 * 15 13 12 36 36 H 1.09001 * 109.47090 * 60.00028 * 15 13 12 37 37 H 1.00898 * 110.99743 * 81.04743 * 16 13 12 38 38 H 1.09000 * 109.47263 * 60.00269 * 17 16 13 39 39 H 1.09001 * 109.47582 * 299.99548 * 17 16 13 40 40 H 1.08993 * 109.46955 * 300.00347 * 18 17 16 41 41 H 1.09000 * 109.47050 * 60.00176 * 18 17 16 42 42 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2043 1.1127 0.0000 4 6 3.5014 0.9984 0.0005 5 6 4.4620 2.1227 0.0012 6 6 4.0077 3.4467 0.0019 7 6 4.9473 4.4624 0.0030 8 6 6.2927 4.1402 0.0028 9 7 6.6917 2.8829 0.0021 10 6 5.8360 1.8816 0.0069 11 16 3.9283 -0.7108 0.0086 12 6 2.2171 -1.1331 0.0005 13 6 1.6518 -2.5299 0.0006 14 1 0.5954 -2.4945 -0.2658 15 6 1.8060 -3.1425 1.3942 16 7 2.3763 -3.3515 -0.9783 17 6 1.5448 -4.4686 -1.4462 18 6 2.3314 -5.2990 -2.4624 19 6 1.4783 -6.4446 -2.9428 20 1 0.4755 -6.5683 -2.5611 21 6 1.9782 -7.3355 -3.8687 22 7 3.1995 -7.1852 -4.3331 23 14 0.9205 -8.7551 -4.4648 24 1 -0.4036 -8.7014 -3.7945 25 1 0.7362 -8.6520 -5.9347 26 1 1.5882 -10.0409 -4.1385 27 1 -0.3634 0.0003 1.0276 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3635 -0.8901 -0.5135 30 1 2.9510 3.6697 0.0013 31 1 4.6337 5.4958 0.0040 32 1 7.0283 4.9310 0.0033 33 1 6.2013 0.8653 0.0109 34 1 1.3975 -4.1531 1.3941 35 1 2.8624 -3.1780 1.6605 36 1 1.2685 -2.5330 2.1205 37 1 3.2481 -3.6852 -0.5956 38 1 0.6428 -4.0778 -1.9172 39 1 1.2694 -5.0964 -0.5987 40 1 2.6065 -4.6710 -3.3096 41 1 3.2336 -5.6898 -1.9917 42 1 3.5511 -7.8117 -4.9847 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273282960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:22 Heat of formation + Delta-G solvation = 65.073251 kcal Electronic energy + Delta-G solvation = -22651.849419 eV Core-core repulsion = 19336.964014 eV Total energy + Delta-G solvation = -3314.885405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51861 -39.70220 -37.04502 -33.93118 -33.15614 -32.31421 -31.41751 -30.32501 -28.00199 -27.28983 -25.60440 -24.24537 -23.88171 -22.40217 -21.65039 -20.79759 -18.72540 -18.06626 -17.34413 -16.44028 -16.31326 -16.15105 -15.28987 -14.91744 -14.56783 -14.50177 -14.31740 -14.09314 -13.75541 -13.58874 -13.37856 -12.87421 -12.72984 -12.65898 -12.53269 -12.34721 -12.24963 -11.83540 -11.38371 -11.17604 -10.99011 -10.94665 -10.58075 -10.37487 -10.12484 -9.89424 -9.81868 -9.78025 -9.47503 -9.23489 -9.13825 -8.40276 -8.27897 -7.97254 -6.03279 -4.06260 0.01401 0.89686 1.20351 1.26011 1.70530 2.74423 3.28789 3.36356 3.39791 3.54446 3.66904 4.14495 4.36368 4.51279 4.52796 4.59464 4.66900 4.80223 4.83924 5.02102 5.14571 5.21828 5.30029 5.32342 5.32892 5.52284 5.57964 5.66341 5.75298 5.79813 5.83590 5.90962 6.03547 6.19428 6.23461 6.28124 6.32430 6.88344 7.31894 7.57612 7.62417 7.64024 7.71259 7.84292 8.02010 8.37869 9.01034 9.57866 11.08141 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.002516 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.042136 B =11124.336766 C =11897.920904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.050 3.950 3 N -0.452 5.452 4 C 0.081 3.919 5 C -0.064 4.064 6 C -0.036 4.036 7 C -0.172 4.172 8 C 0.103 3.897 9 N -0.479 5.479 10 C 0.121 3.879 11 S 0.127 5.873 12 C -0.166 4.166 13 C 0.151 3.849 14 H 0.100 0.900 15 C -0.178 4.178 16 N -0.684 5.684 17 C 0.067 3.933 18 C 0.025 3.975 19 C -0.522 4.522 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.892 5.892 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.338 0.662 38 H 0.060 0.940 39 H 0.020 0.980 40 H 0.026 0.974 41 H 0.014 0.986 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 21.664 12.984 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 N -0.166 5.166 4 C -0.194 4.194 5 C -0.070 4.070 6 C -0.065 4.065 7 C -0.192 4.192 8 C -0.054 4.054 9 N -0.186 5.186 10 C -0.039 4.039 11 S 0.386 5.614 12 C -0.288 4.288 13 C 0.038 3.962 14 H 0.118 0.882 15 C -0.237 4.237 16 N -0.315 5.315 17 C -0.061 4.061 18 C -0.012 4.012 19 C -0.560 4.560 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.531 5.531 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.175 0.825 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.156 0.844 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.614 21.681 12.321 25.074 hybrid contribution -2.248 -1.248 0.282 2.587 sum 0.366 20.433 12.603 24.010 Atomic orbital electron populations 1.20394 0.87229 1.03503 1.02636 1.19903 0.98174 0.85820 1.04365 1.66296 1.04135 1.31123 1.15024 1.25309 0.92328 0.95000 1.06733 1.18867 0.92501 0.91477 1.04150 1.21730 1.01243 0.90722 0.92757 1.22154 0.94149 1.00629 1.02278 1.22931 0.94697 0.93637 0.94143 1.67708 1.38682 1.00128 1.12125 1.22866 0.87857 0.98916 0.94302 1.84873 1.07072 1.01387 1.68062 1.25877 0.94675 1.00283 1.08000 1.20010 0.98391 0.86350 0.91400 0.88215 1.22528 1.02399 1.01691 0.97079 1.60744 1.07302 1.25260 1.38186 1.22220 0.96554 0.89510 0.97774 1.19072 0.95041 0.93593 0.93530 1.21180 1.00202 1.10562 1.24105 0.92674 1.25009 0.95042 0.97986 0.96351 1.69981 1.15362 1.37121 1.30664 0.86530 0.80527 0.82265 0.78626 1.19768 1.20951 1.21018 0.90943 0.90751 0.90432 0.83654 0.84137 0.82309 0.82512 0.91256 0.92324 0.92045 0.84377 0.92110 0.96164 0.95604 0.96766 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.98 36.01 0.36 -0.47 16 2 C 0.05 0.67 6.69 -84.40 -0.56 0.11 16 3 N -0.45 -6.19 10.19 -7.55 -0.08 -6.26 16 4 C 0.08 1.05 7.36 -14.29 -0.11 0.94 16 5 C -0.06 -0.72 5.89 -104.83 -0.62 -1.34 16 6 C -0.04 -0.34 9.81 -38.88 -0.38 -0.72 16 7 C -0.17 -1.27 10.10 -39.50 -0.40 -1.67 16 8 C 0.10 0.84 11.17 -17.48 -0.20 0.65 16 9 N -0.48 -5.16 10.35 -12.92 -0.13 -5.30 16 10 C 0.12 1.31 10.78 -17.13 -0.18 1.13 16 11 S 0.13 1.63 22.32 -107.50 -2.40 -0.77 16 12 C -0.17 -2.27 5.46 -35.90 -0.20 -2.47 16 13 C 0.15 2.08 2.87 -68.86 -0.20 1.89 16 14 H 0.10 1.33 5.98 -51.93 -0.31 1.02 16 15 C -0.18 -2.10 9.14 37.16 0.34 -1.76 16 16 N -0.68 -11.66 6.14 -107.94 -0.66 -12.32 16 17 C 0.07 1.34 5.42 -3.82 -0.02 1.32 16 18 C 0.03 0.64 5.23 -27.88 -0.15 0.49 16 19 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 20 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 23 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.79 6.52 -51.93 -0.34 0.45 16 30 H 0.15 1.29 7.90 -52.49 -0.41 0.88 16 31 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 32 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.16 1.54 7.32 -52.49 -0.38 1.16 16 34 H 0.07 0.84 7.45 -51.93 -0.39 0.46 16 35 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.34 5.64 8.47 -39.29 -0.33 5.31 16 38 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 39 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -32.00 367.77 -10.63 -42.63 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.90 Total: 1.26 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.72 Total: -15.23 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.14 Total: -49.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.40 Total: -0.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.00 -10.63 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273282960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.706 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds