Wall clock time and date at job start Tue Mar 31 2020 11:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31312 * 122.07441 * 2 1 4 4 C 1.30219 * 117.03972 * 179.97438 * 3 2 1 5 5 C 1.47872 * 125.47305 * 180.02562 * 4 3 2 6 6 C 1.39975 * 120.55564 * 0.03065 * 5 4 3 7 7 C 1.38365 * 118.29080 * 179.97438 * 6 5 4 8 8 C 1.38341 * 119.30493 * 0.02562 * 7 6 5 9 9 N 1.31905 * 121.07593 * 359.97438 * 8 7 6 10 10 C 1.31714 * 121.87452 * 359.72676 * 9 8 7 11 11 S 1.76172 * 109.05580 * 359.74120 * 4 3 2 12 12 C 1.33721 * 122.07553 * 179.97438 * 2 1 3 13 13 C 1.50692 * 125.89092 * 0.02562 * 12 2 1 14 14 H 1.09006 * 109.47720 * 14.99991 * 13 12 2 15 15 C 1.53006 * 109.47219 * 254.99887 * 13 12 2 16 16 N 1.46905 * 109.47193 * 134.99922 * 13 12 2 17 17 C 1.46902 * 110.99800 * 204.99693 * 16 13 12 18 18 C 1.53006 * 109.46626 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.46866 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47141 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47494 * 119.99680 * 23 21 19 26 26 H 1.48505 * 109.47047 * 239.99860 * 23 21 19 27 27 H 1.08999 * 109.47305 * 270.01928 * 1 2 3 28 28 H 1.09001 * 109.47636 * 30.01889 * 1 2 3 29 29 H 1.09000 * 109.47783 * 150.02139 * 1 2 3 30 30 H 1.07998 * 120.85330 * 359.95711 * 6 5 4 31 31 H 1.07999 * 120.34441 * 180.02562 * 7 6 5 32 32 H 1.08002 * 119.45961 * 179.97438 * 8 7 6 33 33 H 1.07997 * 119.71348 * 180.29138 * 10 9 8 34 34 H 1.09002 * 109.47182 * 180.02562 * 15 13 12 35 35 H 1.08998 * 109.47049 * 300.00332 * 15 13 12 36 36 H 1.09001 * 109.47090 * 60.00028 * 15 13 12 37 37 H 1.00898 * 110.99743 * 81.04743 * 16 13 12 38 38 H 1.09000 * 109.47263 * 60.00269 * 17 16 13 39 39 H 1.09001 * 109.47582 * 299.99548 * 17 16 13 40 40 H 1.08993 * 109.46955 * 300.00347 * 18 17 16 41 41 H 1.09000 * 109.47050 * 60.00176 * 18 17 16 42 42 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2043 1.1127 0.0000 4 6 3.5014 0.9984 0.0005 5 6 4.4620 2.1227 0.0012 6 6 4.0077 3.4467 0.0019 7 6 4.9473 4.4624 0.0030 8 6 6.2927 4.1402 0.0028 9 7 6.6917 2.8829 0.0021 10 6 5.8360 1.8816 0.0069 11 16 3.9283 -0.7108 0.0086 12 6 2.2171 -1.1331 0.0005 13 6 1.6518 -2.5299 0.0006 14 1 0.5954 -2.4945 -0.2658 15 6 1.8060 -3.1425 1.3942 16 7 2.3763 -3.3515 -0.9783 17 6 1.5448 -4.4686 -1.4462 18 6 2.3314 -5.2990 -2.4624 19 6 1.4783 -6.4446 -2.9428 20 1 0.4755 -6.5683 -2.5611 21 6 1.9782 -7.3355 -3.8687 22 7 3.1995 -7.1852 -4.3331 23 14 0.9205 -8.7551 -4.4648 24 1 -0.4036 -8.7014 -3.7945 25 1 0.7362 -8.6520 -5.9347 26 1 1.5882 -10.0409 -4.1385 27 1 -0.3634 0.0003 1.0276 28 1 -0.3634 0.8898 -0.5141 29 1 -0.3635 -0.8901 -0.5135 30 1 2.9510 3.6697 0.0013 31 1 4.6337 5.4958 0.0040 32 1 7.0283 4.9310 0.0033 33 1 6.2013 0.8653 0.0109 34 1 1.3975 -4.1531 1.3941 35 1 2.8624 -3.1780 1.6605 36 1 1.2685 -2.5330 2.1205 37 1 3.2481 -3.6852 -0.5956 38 1 0.6428 -4.0778 -1.9172 39 1 1.2694 -5.0964 -0.5987 40 1 2.6065 -4.6710 -3.3096 41 1 3.2336 -5.6898 -1.9917 42 1 3.5511 -7.8117 -4.9847 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273282960.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:22 Heat of formation + Delta-G solvation = 45.007490 kcal Electronic energy + Delta-G solvation = -22652.719535 eV Core-core repulsion = 19336.964014 eV Total energy + Delta-G solvation = -3315.755521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32340 -40.61486 -38.33773 -35.52626 -34.45236 -33.22132 -32.69479 -31.36104 -29.62326 -28.22894 -26.45872 -26.05241 -24.68107 -23.29804 -22.78369 -22.52942 -19.71535 -19.06585 -18.47366 -18.09120 -17.26842 -17.00597 -16.54714 -16.29697 -16.03521 -15.63548 -15.49649 -14.92353 -14.79703 -14.51041 -14.32207 -14.15457 -14.08665 -13.94525 -13.53114 -13.39437 -13.18741 -13.02421 -12.90565 -12.87301 -12.44804 -12.30726 -12.05991 -11.95427 -11.46552 -11.30452 -11.14863 -10.79145 -10.59599 -10.58167 -10.51953 -10.20647 -9.43007 -9.14482 -8.20895 -6.32240 -0.87250 0.18653 0.23008 0.40262 0.71485 1.40263 1.40731 1.53796 1.78102 2.39891 2.77791 2.81488 3.13037 3.22960 3.45964 3.73330 3.76069 3.88817 3.96510 3.99691 4.10967 4.20707 4.35005 4.47617 4.49630 4.57680 4.66642 4.70003 4.74253 4.78147 4.89460 4.92930 5.04796 5.09549 5.12606 5.15392 5.33504 5.44537 5.61326 5.65460 5.76844 6.08160 6.21509 6.40866 6.63532 6.85656 6.86336 7.37303 8.91527 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020009 B = 0.002516 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.042136 B =11124.336766 C =11897.920904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.047 3.953 3 N -0.468 5.468 4 C 0.088 3.912 5 C -0.088 4.088 6 C -0.041 4.041 7 C -0.159 4.159 8 C 0.104 3.896 9 N -0.503 5.503 10 C 0.112 3.888 11 S 0.116 5.884 12 C -0.188 4.188 13 C 0.156 3.844 14 H 0.106 0.894 15 C -0.171 4.171 16 N -0.694 5.694 17 C 0.088 3.912 18 C 0.031 3.969 19 C -0.540 4.540 20 H 0.064 0.936 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.967 3.033 24 H -0.259 1.259 25 H -0.280 1.280 26 H -0.279 1.279 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.178 0.822 32 H 0.193 0.807 33 H 0.156 0.844 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.338 0.662 38 H 0.062 0.938 39 H 0.030 0.970 40 H -0.009 1.009 41 H -0.009 1.009 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 23.077 13.819 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 N -0.183 5.183 4 C -0.186 4.186 5 C -0.094 4.094 6 C -0.070 4.070 7 C -0.178 4.178 8 C -0.053 4.053 9 N -0.211 5.211 10 C -0.048 4.048 11 S 0.375 5.625 12 C -0.309 4.309 13 C 0.044 3.956 14 H 0.124 0.876 15 C -0.230 4.230 16 N -0.324 5.324 17 C -0.041 4.041 18 C -0.006 4.006 19 C -0.579 4.579 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.791 3.209 24 H -0.183 1.183 25 H -0.206 1.206 26 H -0.204 1.204 27 H 0.109 0.891 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.168 0.832 31 H 0.196 0.804 32 H 0.210 0.790 33 H 0.173 0.827 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.156 0.844 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.405 23.099 13.176 26.630 hybrid contribution -1.768 -1.486 0.034 2.310 sum -0.363 21.613 13.209 25.333 Atomic orbital electron populations 1.20481 0.85442 1.03813 1.03911 1.20340 0.99453 0.85570 1.03261 1.66367 1.04376 1.31278 1.16231 1.25675 0.92533 0.95259 1.05182 1.18960 0.92351 0.91881 1.06192 1.21937 1.02050 0.90473 0.92525 1.22531 0.93312 1.01867 1.00112 1.23581 0.96029 0.93395 0.92272 1.67740 1.39072 1.01214 1.13120 1.22882 0.87903 0.99266 0.94722 1.84863 1.07225 1.01990 1.68419 1.25833 0.94891 1.00242 1.09976 1.20016 0.98172 0.85887 0.91534 0.87600 1.22449 1.02662 1.01629 0.96241 1.60607 1.07320 1.24288 1.40230 1.21802 0.95770 0.89858 0.96637 1.18922 0.94704 0.93431 0.93586 1.21633 1.00787 1.11229 1.24221 0.91820 1.25992 0.96350 1.01047 0.96544 1.70122 1.17328 1.38444 1.31425 0.85373 0.79058 0.78422 0.78020 1.18323 1.20570 1.20426 0.89113 0.90347 0.90149 0.83240 0.80416 0.78994 0.82668 0.91507 0.92418 0.90176 0.84386 0.91957 0.95158 0.99091 0.99089 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.52 9.98 71.24 0.71 -0.81 16 2 C 0.05 1.21 6.69 41.61 0.28 1.49 16 3 N -0.47 -12.64 10.19 -177.80 -1.81 -14.45 16 4 C 0.09 2.29 7.36 87.48 0.64 2.93 16 5 C -0.09 -1.96 5.89 -20.00 -0.12 -2.08 16 6 C -0.04 -0.72 9.81 22.72 0.22 -0.49 16 7 C -0.16 -1.89 10.10 22.32 0.23 -1.66 16 8 C 0.10 1.44 11.17 84.71 0.95 2.39 16 9 N -0.50 -10.39 10.35 -194.78 -2.02 -12.40 16 10 C 0.11 2.45 10.78 85.02 0.92 3.37 16 11 S 0.12 3.05 22.32 -56.49 -1.26 1.79 16 12 C -0.19 -5.09 5.46 24.66 0.13 -4.95 16 13 C 0.16 4.20 2.87 44.17 0.13 4.33 16 14 H 0.11 2.71 5.98 -2.38 -0.01 2.69 16 15 C -0.17 -3.86 9.14 71.98 0.66 -3.20 16 16 N -0.69 -23.93 6.14 -495.42 -3.04 -26.97 16 17 C 0.09 3.53 5.42 86.31 0.47 3.99 16 18 C 0.03 1.64 5.23 29.85 0.16 1.80 16 19 C -0.54 -30.46 9.11 25.60 0.23 -30.23 16 20 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 21 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 22 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 23 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.08 1.53 6.52 -2.39 -0.02 1.51 16 30 H 0.15 2.45 7.90 -2.91 -0.02 2.42 16 31 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 32 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.16 3.23 7.32 -2.91 -0.02 3.20 16 34 H 0.07 1.54 7.45 -2.39 -0.02 1.52 16 35 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.34 11.59 8.47 -89.70 -0.76 10.83 16 38 H 0.06 2.48 8.06 -2.39 -0.02 2.46 16 39 H 0.03 1.15 7.44 -2.39 -0.02 1.14 16 40 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -70.07 367.77 0.52 -69.55 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.28 Total: 16.04 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 6.07 Total: -22.75 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -6.58 Total: -110.73 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.26 Total: 1.79 kcal Total: -70.07 0.52 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273282960.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.556 kcal (2) G-P(sol) polarization free energy of solvation -70.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds