Wall clock time and date at job start Tue Mar 31 2020 13:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46936 * 2 1 4 4 H 1.09000 * 109.46959 * 54.99983 * 3 2 1 5 5 C 1.50704 * 109.47132 * 175.00092 * 3 2 1 6 6 H 1.07992 * 119.99766 * 119.99811 * 5 3 2 7 7 C 1.37872 * 119.99584 * 299.99695 * 5 3 2 8 8 N 1.31515 * 119.99877 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00323 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47182 * 90.00026 * 9 7 5 11 11 H 1.48498 * 109.47147 * 209.99927 * 9 7 5 12 12 H 1.48497 * 109.47278 * 329.99749 * 9 7 5 13 13 N 1.46500 * 109.46846 * 294.99996 * 3 2 1 14 14 C 1.34778 * 120.00308 * 85.00072 * 13 3 2 15 15 O 1.21652 * 119.99809 * 0.02562 * 14 13 3 16 16 C 1.46975 * 119.99916 * 179.97438 * 14 13 3 17 17 O 1.34945 * 125.13710 * 359.95612 * 16 14 13 18 18 C 1.34709 * 110.86842 * 180.02562 * 17 16 14 19 19 C 1.39024 * 133.24491 * 180.02562 * 18 17 16 20 20 C 1.37800 * 119.85785 * 180.02562 * 19 18 17 21 21 C 1.38839 * 120.74068 * 0.02562 * 20 19 18 22 22 C 1.36624 * 120.44581 * 0.02562 * 21 20 19 23 23 C 1.39709 * 119.70998 * 359.95323 * 22 21 20 24 24 C 1.35814 * 125.12990 * 180.02562 * 16 14 13 25 25 C 1.50703 * 126.95679 * 359.70042 * 24 16 14 26 26 O 1.42891 * 109.47133 * 90.02556 * 25 24 16 27 27 C 1.42902 * 113.99869 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47772 * 299.99788 * 1 2 3 30 30 H 1.08998 * 109.47354 * 60.00078 * 1 2 3 31 31 H 1.08996 * 109.47347 * 240.00477 * 2 1 3 32 32 H 1.08998 * 109.47557 * 119.99407 * 2 1 3 33 33 H 0.97002 * 120.00336 * 180.02562 * 8 7 5 34 34 H 0.97004 * 119.99902 * 264.99689 * 13 3 2 35 35 H 1.07994 * 120.07140 * 359.97438 * 19 18 17 36 36 H 1.07993 * 119.63071 * 180.02562 * 20 19 18 37 37 H 1.07996 * 119.77734 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.14622 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.46617 * 210.02654 * 25 24 16 40 40 H 1.08995 * 109.47320 * 330.02347 * 25 24 16 41 41 H 1.09002 * 109.47217 * 299.99990 * 27 26 25 42 42 H 1.08997 * 109.47144 * 60.00214 * 27 26 25 43 43 H 1.09005 * 109.46917 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1470 1.8890 -0.6523 7 6 4.1431 0.8786 1.2280 8 7 5.4539 0.8797 1.3358 9 14 3.0963 0.1091 2.5701 10 1 2.8755 -1.3270 2.2634 11 1 3.7935 0.2350 3.8751 12 1 1.7876 0.8074 2.6387 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3418 2.6326 -0.4313 16 6 0.0464 3.3219 -2.6228 17 8 0.8239 3.4191 -3.7215 18 6 0.1832 4.0789 -4.7058 19 6 0.5381 4.4340 -6.0022 20 6 -0.3537 5.1262 -6.7924 21 6 -1.6074 5.4757 -6.3089 22 6 -1.9779 5.1385 -5.0379 23 6 -1.0886 4.4363 -4.2207 24 6 -1.1489 3.9245 -2.8521 25 6 -2.3051 4.0383 -1.8922 26 8 -2.1729 5.2381 -1.1274 27 6 -3.2245 5.4434 -0.1818 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 5.8770 0.4813 2.1125 34 1 2.2718 2.1232 -1.9978 35 1 1.5109 4.1687 -6.3889 36 1 -0.0744 5.3998 -7.7991 37 1 -2.2940 6.0186 -6.9415 38 1 -2.9542 5.4132 -4.6666 39 1 -3.2403 4.0651 -2.4515 40 1 -2.3071 3.1787 -1.2221 41 1 -4.1786 5.4996 -0.7059 42 1 -3.2459 4.6129 0.5238 43 1 -3.0513 6.3746 0.3577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273827441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:56 Heat of formation + Delta-G solvation = -46.505622 kcal Electronic energy + Delta-G solvation = -26786.622616 eV Core-core repulsion = 22991.853167 eV Total energy + Delta-G solvation = -3794.769450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.57418 -39.29515 -37.96358 -37.70354 -35.52769 -33.32021 -32.48988 -31.69533 -30.62426 -29.82946 -27.93771 -27.28218 -25.47289 -24.14694 -22.83863 -22.63205 -21.20728 -20.17540 -19.82289 -18.37127 -17.34422 -16.73825 -16.66966 -16.19848 -15.95669 -15.60997 -15.46489 -15.03994 -14.76044 -14.65712 -14.27811 -13.98073 -13.55388 -13.40917 -13.01347 -12.56434 -12.47499 -12.33616 -12.19147 -12.01667 -11.92885 -11.84521 -11.43940 -11.15810 -11.07757 -10.98044 -10.68504 -10.15128 -9.97376 -9.94202 -9.54527 -9.33177 -9.27430 -8.81069 -8.78443 -8.39074 -8.13674 -6.23302 -4.26665 0.52523 1.19541 1.76842 2.48558 3.21032 3.33503 3.37156 3.43870 3.51521 3.65984 4.03291 4.28665 4.45418 4.53517 4.72786 4.83190 5.00488 5.09496 5.15136 5.19609 5.25174 5.33602 5.39433 5.48994 5.63738 5.69074 5.80540 5.89729 5.96407 6.00680 6.09519 6.12911 6.20929 6.25267 6.41178 6.58830 6.62732 6.74068 6.85584 6.94522 7.13990 7.19042 7.21292 7.42136 8.03471 8.41177 8.60720 8.77913 9.35854 10.88670 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.003925 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.401363 B = 7132.301109 C = 8277.038925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.242 3.758 4 H 0.054 0.946 5 C -0.538 4.538 6 H 0.082 0.918 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.681 5.681 14 C 0.583 3.417 15 O -0.516 6.516 16 C 0.018 3.982 17 O -0.178 6.178 18 C 0.065 3.935 19 C -0.106 4.106 20 C -0.091 4.091 21 C -0.139 4.139 22 C -0.062 4.062 23 C -0.124 4.124 24 C -0.110 4.110 25 C 0.130 3.870 26 O -0.380 6.380 27 C 0.034 3.966 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.268 0.732 34 H 0.402 0.598 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 7.071 -13.360 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.100 0.900 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.327 5.327 14 C 0.366 3.634 15 O -0.395 6.395 16 C -0.033 4.033 17 O -0.078 6.078 18 C 0.016 3.984 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.157 4.157 22 C -0.080 4.080 23 C -0.125 4.125 24 C -0.113 4.113 25 C 0.054 3.946 26 O -0.299 6.299 27 C -0.062 4.062 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.236 0.764 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.134 6.984 -12.583 21.619 hybrid contribution -0.316 -0.573 0.366 0.749 sum -16.449 6.411 -12.217 21.470 Atomic orbital electron populations 1.21893 0.96949 0.99320 1.02136 1.22303 0.94367 0.99702 1.01450 1.19293 0.96073 0.88613 0.82156 0.92825 1.21014 0.88336 1.40113 1.08074 0.90019 1.24819 0.94887 0.95076 0.97603 1.69863 1.08682 1.44259 1.29814 0.86910 0.80984 0.79960 0.80949 1.20160 1.22063 1.18396 1.46198 1.13921 1.54050 1.18566 1.16678 0.83657 0.79271 0.83788 1.90820 1.51677 1.60216 1.36760 1.22428 0.90488 1.02919 0.87491 1.84092 1.41028 1.62854 1.19868 1.19734 0.91236 0.96768 0.90630 1.20011 1.01459 1.01653 0.89340 1.20958 0.93249 0.97203 0.99501 1.20759 0.97088 1.02135 0.95746 1.20314 0.98663 0.96048 0.92997 1.19739 0.95548 1.03242 0.93981 1.20869 0.95809 1.01238 0.93430 1.20755 0.92843 0.89433 0.91601 1.87946 1.47965 1.41257 1.52736 1.22710 0.89704 1.01862 0.91966 0.94684 0.92697 0.93151 0.92050 0.92449 0.92201 0.76378 0.84650 0.84686 0.85287 0.85507 0.92795 0.89692 0.94496 0.93586 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.51 37.15 0.32 -2.52 16 2 C -0.14 -3.05 5.11 -26.73 -0.14 -3.18 16 3 C 0.24 5.68 1.83 -69.08 -0.13 5.55 16 4 H 0.05 1.37 6.63 -51.93 -0.34 1.03 16 5 C -0.54 -14.49 9.31 -34.44 -0.32 -14.81 16 6 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 7 C 0.08 2.23 5.45 -17.82 -0.10 2.14 16 8 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 9 Si 0.88 21.42 24.41 -169.99 -4.15 17.27 16 10 H -0.27 -6.44 6.83 56.52 0.39 -6.06 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.68 -13.98 5.02 -56.15 -0.28 -14.27 16 14 C 0.58 11.50 6.36 -12.72 -0.08 11.42 16 15 O -0.52 -10.93 11.76 5.23 0.06 -10.87 16 16 C 0.02 0.31 7.07 -36.91 -0.26 0.05 16 17 O -0.18 -2.92 10.28 2.80 0.03 -2.89 16 18 C 0.06 0.93 7.41 -38.35 -0.28 0.65 16 19 C -0.11 -1.18 10.07 -39.45 -0.40 -1.57 16 20 C -0.09 -0.81 10.01 -39.52 -0.40 -1.20 16 21 C -0.14 -1.25 9.98 -39.94 -0.40 -1.65 16 22 C -0.06 -0.69 10.06 -39.62 -0.40 -1.09 16 23 C -0.12 -1.77 6.37 -105.19 -0.67 -2.44 16 24 C -0.11 -1.77 6.02 -102.28 -0.62 -2.38 16 25 C 0.13 1.90 5.85 36.01 0.21 2.11 16 26 O -0.38 -5.96 10.69 -35.23 -0.38 -6.34 16 27 C 0.03 0.39 11.01 101.05 1.11 1.51 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 1.11 7.84 -51.93 -0.41 0.70 16 30 H 0.05 0.96 5.64 -51.93 -0.29 0.67 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.31 3.21 -51.93 -0.17 1.14 16 33 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.40 7.67 8.25 -40.82 -0.34 7.33 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.33 6.39 -51.93 -0.33 1.00 16 41 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -31.56 352.33 -6.89 -38.44 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.71 Total: 6.22 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.54 Total: -7.42 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.49 Total: -39.73 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.29 Total: -20.10 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.15 Total: 17.27 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.56 -6.89 -38.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273827441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.061 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds