Wall clock time and date at job start Tue Mar 31 2020 13:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46936 * 2 1 4 4 H 1.09000 * 109.46959 * 54.99983 * 3 2 1 5 5 C 1.50704 * 109.47132 * 175.00092 * 3 2 1 6 6 H 1.07992 * 119.99766 * 119.99811 * 5 3 2 7 7 C 1.37872 * 119.99584 * 299.99695 * 5 3 2 8 8 N 1.31515 * 119.99877 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00323 * 0.02562 * 7 5 3 10 10 H 1.48496 * 109.47182 * 90.00026 * 9 7 5 11 11 H 1.48498 * 109.47147 * 209.99927 * 9 7 5 12 12 H 1.48497 * 109.47278 * 329.99749 * 9 7 5 13 13 N 1.46500 * 109.46846 * 294.99996 * 3 2 1 14 14 C 1.34778 * 120.00308 * 85.00072 * 13 3 2 15 15 O 1.21652 * 119.99809 * 0.02562 * 14 13 3 16 16 C 1.46975 * 119.99916 * 179.97438 * 14 13 3 17 17 O 1.34945 * 125.13710 * 359.95612 * 16 14 13 18 18 C 1.34709 * 110.86842 * 180.02562 * 17 16 14 19 19 C 1.39024 * 133.24491 * 180.02562 * 18 17 16 20 20 C 1.37800 * 119.85785 * 180.02562 * 19 18 17 21 21 C 1.38839 * 120.74068 * 0.02562 * 20 19 18 22 22 C 1.36624 * 120.44581 * 0.02562 * 21 20 19 23 23 C 1.39709 * 119.70998 * 359.95323 * 22 21 20 24 24 C 1.35814 * 125.12990 * 180.02562 * 16 14 13 25 25 C 1.50703 * 126.95679 * 359.70042 * 24 16 14 26 26 O 1.42891 * 109.47133 * 90.02556 * 25 24 16 27 27 C 1.42902 * 113.99869 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47772 * 299.99788 * 1 2 3 30 30 H 1.08998 * 109.47354 * 60.00078 * 1 2 3 31 31 H 1.08996 * 109.47347 * 240.00477 * 2 1 3 32 32 H 1.08998 * 109.47557 * 119.99407 * 2 1 3 33 33 H 0.97002 * 120.00336 * 180.02562 * 8 7 5 34 34 H 0.97004 * 119.99902 * 264.99689 * 13 3 2 35 35 H 1.07994 * 120.07140 * 359.97438 * 19 18 17 36 36 H 1.07993 * 119.63071 * 180.02562 * 20 19 18 37 37 H 1.07996 * 119.77734 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.14622 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.46617 * 210.02654 * 25 24 16 40 40 H 1.08995 * 109.47320 * 330.02347 * 25 24 16 41 41 H 1.09002 * 109.47217 * 299.99990 * 27 26 25 42 42 H 1.08997 * 109.47144 * 60.00214 * 27 26 25 43 43 H 1.09005 * 109.46917 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1470 1.8890 -0.6523 7 6 4.1431 0.8786 1.2280 8 7 5.4539 0.8797 1.3358 9 14 3.0963 0.1091 2.5701 10 1 2.8755 -1.3270 2.2634 11 1 3.7935 0.2350 3.8751 12 1 1.7876 0.8074 2.6387 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3418 2.6326 -0.4313 16 6 0.0464 3.3219 -2.6228 17 8 0.8239 3.4191 -3.7215 18 6 0.1832 4.0789 -4.7058 19 6 0.5381 4.4340 -6.0022 20 6 -0.3537 5.1262 -6.7924 21 6 -1.6074 5.4757 -6.3089 22 6 -1.9779 5.1385 -5.0379 23 6 -1.0886 4.4363 -4.2207 24 6 -1.1489 3.9245 -2.8521 25 6 -2.3051 4.0383 -1.8922 26 8 -2.1729 5.2381 -1.1274 27 6 -3.2245 5.4434 -0.1818 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 5.8770 0.4813 2.1125 34 1 2.2718 2.1232 -1.9978 35 1 1.5109 4.1687 -6.3889 36 1 -0.0744 5.3998 -7.7991 37 1 -2.2940 6.0186 -6.9415 38 1 -2.9542 5.4132 -4.6666 39 1 -3.2403 4.0651 -2.4515 40 1 -2.3071 3.1787 -1.2221 41 1 -4.1786 5.4996 -0.7059 42 1 -3.2459 4.6129 0.5238 43 1 -3.0513 6.3746 0.3577 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273827441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:55 Heat of formation + Delta-G solvation = -68.099061 kcal Electronic energy + Delta-G solvation = -26787.558978 eV Core-core repulsion = 22991.853167 eV Total energy + Delta-G solvation = -3795.705811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.66396 -40.84925 -38.91654 -38.76228 -37.27315 -34.55882 -34.33510 -33.41510 -31.49307 -30.87928 -29.58875 -28.54894 -26.56592 -25.39627 -24.40925 -23.76310 -22.58658 -21.50331 -21.30612 -19.85793 -18.43514 -18.31845 -17.87449 -17.66234 -17.12230 -17.04219 -16.59204 -16.40686 -16.13801 -15.78824 -15.65591 -15.15823 -14.98976 -14.78964 -14.39318 -14.14867 -13.82471 -13.71359 -13.36688 -13.26442 -13.20232 -12.99994 -12.82053 -12.77968 -12.44203 -12.42924 -11.93052 -11.88403 -11.52127 -11.30707 -11.21632 -11.15243 -10.88988 -10.56552 -9.99741 -9.68479 -9.29651 -8.40358 -6.47725 -0.54995 0.32341 0.71183 1.26834 1.34529 1.35419 1.44847 1.98462 2.21396 2.24817 2.67037 2.94723 2.99769 3.33534 3.56388 3.66956 3.90430 4.09311 4.18712 4.22501 4.27780 4.30327 4.35743 4.39210 4.49679 4.50844 4.56172 4.67022 4.77402 4.79716 4.82932 4.96453 5.05713 5.08011 5.16233 5.24560 5.29703 5.36200 5.45936 5.46775 5.48343 5.56480 5.97837 6.09750 6.16259 6.51014 6.65050 7.01807 7.21428 8.75045 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.003925 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.401363 B = 7132.301109 C = 8277.038925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.032 0.968 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.031 3.969 8 N -0.933 5.933 9 Si 0.939 3.061 10 H -0.256 1.256 11 H -0.292 1.292 12 H -0.256 1.256 13 N -0.686 5.686 14 C 0.587 3.413 15 O -0.536 6.536 16 C -0.022 4.022 17 O -0.194 6.194 18 C 0.040 3.960 19 C -0.122 4.122 20 C -0.071 4.071 21 C -0.129 4.129 22 C -0.067 4.067 23 C -0.149 4.149 24 C -0.099 4.099 25 C 0.130 3.870 26 O -0.409 6.409 27 C 0.028 3.972 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.271 0.729 34 H 0.406 0.594 35 H 0.150 0.850 36 H 0.176 0.824 37 H 0.169 0.831 38 H 0.147 0.853 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.136 7.845 -15.627 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.050 0.950 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.170 4.170 8 N -0.571 5.571 9 Si 0.765 3.235 10 H -0.182 1.182 11 H -0.219 1.219 12 H -0.180 1.180 13 N -0.334 5.334 14 C 0.372 3.628 15 O -0.416 6.416 16 C -0.072 4.072 17 O -0.096 6.096 18 C -0.008 4.008 19 C -0.141 4.141 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.085 4.085 23 C -0.150 4.150 24 C -0.103 4.103 25 C 0.054 3.946 26 O -0.329 6.329 27 C -0.067 4.067 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.168 0.832 36 H 0.194 0.806 37 H 0.187 0.813 38 H 0.165 0.835 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.070 7.764 -14.874 25.400 hybrid contribution 0.538 -0.621 0.830 1.168 sum -18.531 7.143 -14.044 24.324 Atomic orbital electron populations 1.21781 0.94929 1.00991 1.01607 1.22212 0.96117 0.97917 1.01355 1.18955 0.93584 0.89981 0.82866 0.94994 1.21233 0.90160 1.39197 1.07233 0.93052 1.25582 0.95862 0.95662 0.99847 1.69981 1.10411 1.45831 1.30907 0.85994 0.79385 0.80059 0.78035 1.18163 1.21886 1.17981 1.46028 1.14769 1.54822 1.17755 1.16851 0.82797 0.78531 0.84582 1.90787 1.52020 1.60893 1.37894 1.21887 0.91798 1.05955 0.87596 1.84015 1.41489 1.63911 1.20173 1.20355 0.91725 0.97295 0.91399 1.20444 1.02987 1.02325 0.88308 1.21536 0.92397 0.94337 1.00606 1.21285 0.97574 1.00710 0.95086 1.20684 0.99008 0.95305 0.93537 1.19939 0.96539 1.05058 0.93487 1.21275 0.95170 0.99224 0.94614 1.20810 0.93711 0.88684 0.91412 1.87895 1.49979 1.41364 1.53641 1.22919 0.90049 1.02141 0.91624 0.91800 0.93703 0.93256 0.91422 0.93144 0.91927 0.75914 0.83219 0.80634 0.81324 0.83529 0.89528 0.91390 0.91643 0.94223 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 8.51 71.98 0.61 -4.57 16 2 C -0.14 -5.99 5.11 30.59 0.16 -5.83 16 3 C 0.25 12.15 1.83 44.25 0.08 12.23 16 4 H 0.03 1.70 6.63 -2.39 -0.02 1.68 16 5 C -0.54 -30.37 9.31 25.60 0.24 -30.13 16 6 H 0.05 3.12 7.98 -2.91 -0.02 3.10 16 7 C 0.03 1.74 5.45 84.65 0.46 2.20 16 8 N -0.93 -56.75 13.96 21.45 0.30 -56.45 16 9 Si 0.94 44.67 24.41 68.60 1.67 46.35 16 10 H -0.26 -11.36 6.83 99.48 0.68 -10.68 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.26 -11.92 6.53 99.48 0.65 -11.27 16 13 N -0.69 -29.64 5.02 -449.78 -2.26 -31.90 16 14 C 0.59 24.24 6.36 86.53 0.55 24.79 16 15 O -0.54 -23.55 11.76 -4.20 -0.05 -23.60 16 16 C -0.02 -0.81 7.07 24.00 0.17 -0.64 16 17 O -0.19 -6.66 10.28 -12.91 -0.13 -6.79 16 18 C 0.04 1.13 7.41 23.07 0.17 1.30 16 19 C -0.12 -2.46 10.07 22.35 0.23 -2.23 16 20 C -0.07 -0.95 10.01 22.31 0.22 -0.72 16 21 C -0.13 -1.69 9.98 22.04 0.22 -1.47 16 22 C -0.07 -1.28 10.06 22.25 0.22 -1.06 16 23 C -0.15 -4.10 6.37 -20.23 -0.13 -4.23 16 24 C -0.10 -3.22 6.02 -18.35 -0.11 -3.33 16 25 C 0.13 3.74 5.85 71.24 0.42 4.16 16 26 O -0.41 -12.67 10.69 -148.98 -1.59 -14.26 16 27 C 0.03 0.62 11.01 113.37 1.25 1.87 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.79 7.84 -2.39 -0.02 1.77 16 30 H 0.05 1.88 5.64 -2.39 -0.01 1.87 16 31 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.05 2.26 3.21 -2.39 -0.01 2.25 16 33 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.41 16.59 8.25 -92.71 -0.77 15.82 16 35 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 2.17 6.39 -2.39 -0.02 2.16 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -72.10 352.33 2.90 -69.21 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.20 Total: 25.10 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 4.76 Total: -7.66 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -1.96 Total: -88.35 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.77 Total: -44.65 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.67 Total: 46.35 kcal Total: -72.10 2.90 -69.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273827441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.108 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds