Wall clock time and date at job start Tue Mar 31 2020 11:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46681 * 2 1 4 4 C 1.38236 * 120.00055 * 90.00226 * 3 2 1 5 5 C 1.38231 * 119.99890 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00225 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00415 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46615 * 90.00190 * 7 6 5 9 9 S 1.81002 * 109.47085 * 180.02562 * 8 7 6 10 10 C 1.76199 * 100.00182 * 180.02562 * 9 8 7 11 11 N 1.32384 * 126.25617 * 0.02950 * 10 9 8 12 12 N 1.28524 * 110.19860 * 179.97438 * 11 10 9 13 13 C 1.33090 * 109.74647 * 359.97438 * 12 11 10 14 14 C 1.39783 * 126.56268 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99755 * 179.97438 * 14 13 12 16 16 C 1.40080 * 120.00105 * 359.97438 * 14 13 12 17 17 N 1.30823 * 119.99488 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00114 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47073 * 59.99955 * 18 16 14 20 20 H 1.48505 * 109.46879 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46778 * 299.99547 * 18 16 14 22 22 N 1.36669 * 126.25581 * 179.71498 * 10 9 8 23 23 C 1.46500 * 127.15363 * 359.97163 * 22 10 9 24 24 C 1.38242 * 120.00022 * 0.26288 * 6 5 4 25 25 C 1.38235 * 119.99730 * 359.48840 * 24 6 5 26 26 H 1.08999 * 109.46829 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47444 * 299.99982 * 1 2 3 28 28 H 1.08996 * 109.47010 * 60.00455 * 1 2 3 29 29 H 1.08998 * 109.47281 * 239.99544 * 2 1 3 30 30 H 1.09000 * 109.46850 * 120.00025 * 2 1 3 31 31 H 1.08005 * 119.99848 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.99805 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46512 * 330.00863 * 7 6 5 34 34 H 1.08996 * 109.47137 * 210.00423 * 7 6 5 35 35 H 1.09005 * 109.46968 * 60.00578 * 8 7 6 36 36 H 1.09000 * 109.47398 * 300.00455 * 8 7 6 37 37 H 0.97000 * 119.99441 * 180.02562 * 17 16 14 38 38 H 1.08992 * 109.47156 * 90.02520 * 23 22 10 39 39 H 1.09000 * 109.46754 * 210.02269 * 23 22 10 40 40 H 1.08998 * 109.47269 * 330.01869 * 23 22 10 41 41 H 1.08003 * 119.99960 * 179.72506 * 24 6 5 42 42 H 1.07999 * 120.00269 * 180.23709 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7228 3.3760 1.1971 6 6 2.9531 4.0277 0.0000 7 6 3.4543 5.4489 -0.0001 8 6 4.9842 5.4501 0.0004 9 16 5.5863 7.1571 0.0011 10 6 7.3245 6.8685 0.0008 11 7 7.9220 5.6872 -0.0003 12 7 9.1986 5.8356 -0.0007 13 6 9.5006 7.1318 -0.0004 14 6 10.7830 7.6881 -0.0012 15 1 10.9062 8.7610 -0.0014 16 6 11.9083 6.8538 -0.0019 17 7 11.7589 5.5542 -0.0013 18 14 13.6220 7.5971 -0.0037 19 1 13.7986 8.4368 1.2083 20 1 14.6333 6.5096 -0.0035 21 1 13.7965 8.4358 -1.2167 22 7 8.3023 7.8233 -0.0044 23 6 8.1195 9.2769 -0.0113 24 6 2.7181 3.3777 -1.1972 25 6 2.2628 2.0724 -1.1972 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0823 1.5635 2.1325 32 1 2.9024 3.8853 2.1325 33 1 3.0902 5.9625 0.8898 34 1 3.0908 5.9623 -0.8902 35 1 5.3482 4.9364 -0.8894 36 1 5.3477 4.9366 0.8906 37 1 12.5382 4.9765 -0.0013 38 1 8.0752 9.6424 1.0145 39 1 8.9568 9.7458 -0.5283 40 1 7.1908 9.5239 -0.5255 41 1 2.8938 3.8883 -2.1325 42 1 2.0828 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279857942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:55 Heat of formation + Delta-G solvation = 52.178867 kcal Electronic energy + Delta-G solvation = -22442.415452 eV Core-core repulsion = 19126.970905 eV Total energy + Delta-G solvation = -3315.444547 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.46039 -40.44615 -36.24073 -35.63064 -35.15744 -33.38916 -31.80008 -31.32713 -29.53864 -28.25788 -27.44324 -25.45994 -23.62564 -23.37671 -22.78172 -22.22685 -21.25934 -19.26476 -17.85530 -17.34752 -17.13028 -16.81142 -16.52306 -16.31972 -16.03825 -15.31209 -15.28355 -14.95586 -14.50993 -14.50188 -14.11923 -14.09868 -13.94403 -13.81266 -13.54799 -13.21093 -12.94122 -12.78191 -12.61882 -12.49952 -12.46482 -12.03373 -11.96710 -11.85795 -11.70409 -11.62894 -11.50415 -11.42217 -10.58324 -10.37088 -10.28622 -9.79933 -9.41401 -8.55033 -8.54200 -6.59681 0.28915 0.52600 0.57947 1.19791 1.28585 1.40853 1.56614 1.61808 2.18031 2.43999 2.50708 2.83148 3.33213 3.82319 3.83549 4.02353 4.02573 4.06061 4.08755 4.17274 4.31167 4.44971 4.51715 4.57970 4.60812 4.61191 4.61393 4.73321 4.86577 4.88260 4.94733 5.03177 5.07289 5.09661 5.20227 5.24663 5.31119 5.39345 5.53769 5.55644 5.72574 5.74751 6.02903 6.14481 6.20856 6.74703 6.91678 8.40469 8.63622 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.021915 B = 0.002415 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.338464 B =11589.508284 C =12541.138880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.093 4.093 4 C -0.127 4.127 5 C -0.121 4.121 6 C -0.094 4.094 7 C -0.052 4.052 8 C -0.078 4.078 9 S -0.006 6.006 10 C 0.054 3.946 11 N -0.333 5.333 12 N -0.390 5.390 13 C 0.316 3.684 14 C -0.471 4.471 15 H 0.104 0.896 16 C 0.027 3.973 17 N -0.789 5.789 18 Si 1.008 2.992 19 H -0.253 1.253 20 H -0.272 1.272 21 H -0.253 1.253 22 N -0.522 5.522 23 C 0.093 3.907 24 C -0.121 4.121 25 C -0.127 4.127 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.284 0.716 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 -1.772 -0.099 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.096 4.096 7 C -0.091 4.091 8 C -0.228 4.228 9 S 0.221 5.779 10 C -0.319 4.319 11 N -0.177 5.177 12 N -0.237 5.237 13 C 0.069 3.931 14 C -0.511 4.511 15 H 0.122 0.878 16 C -0.194 4.194 17 N -0.414 5.414 18 Si 0.827 3.173 19 H -0.177 1.177 20 H -0.197 1.197 21 H -0.176 1.176 22 N -0.224 5.224 23 C -0.049 4.049 24 C -0.140 4.140 25 C -0.145 4.145 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.149 0.851 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.303 -2.475 -0.102 19.462 hybrid contribution 1.657 0.262 0.016 1.678 sum -17.646 -2.213 -0.086 17.784 Atomic orbital electron populations 1.21717 0.93877 1.02406 1.01966 1.20592 0.96817 0.91432 1.03418 1.20214 0.98737 0.97235 0.93088 1.21256 1.00043 0.94757 0.98436 1.21283 0.99276 0.95429 0.97973 1.19798 1.00070 0.95884 0.93833 1.20294 0.89683 0.93916 1.05228 1.23356 0.99253 0.94823 1.05339 1.84023 0.87081 1.11851 1.94916 1.26464 0.97488 0.89193 1.18788 1.74423 1.03269 1.21198 1.18836 1.75314 1.02434 1.14172 1.31753 1.22069 0.87666 0.87457 0.95887 1.18600 0.86834 0.95588 1.50107 0.87793 1.27034 1.05848 0.94682 0.91818 1.70168 1.33861 1.05654 1.31759 0.84884 0.73583 0.78450 0.80417 1.17697 1.19679 1.17645 1.46396 1.04724 1.07823 1.63463 1.21859 1.03974 0.75745 1.03363 1.21287 0.99286 0.95412 0.97965 1.21258 1.00066 0.94735 0.98434 0.91142 0.92802 0.92809 0.90533 0.90537 0.84663 0.85159 0.88734 0.88721 0.90955 0.90961 0.90546 0.90766 0.89286 0.88988 0.85142 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.89 71.98 0.71 -1.05 16 2 C -0.09 -1.27 6.06 29.85 0.18 -1.08 16 3 C -0.09 -1.85 5.13 -19.86 -0.10 -1.95 16 4 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 5 C -0.12 -2.76 9.70 22.27 0.22 -2.54 16 6 C -0.09 -2.23 5.13 -19.86 -0.10 -2.33 16 7 C -0.05 -1.21 5.35 29.85 0.16 -1.05 16 8 C -0.08 -2.52 5.21 71.98 0.37 -2.15 16 9 S -0.01 -0.21 21.78 -56.49 -1.23 -1.44 16 10 C 0.05 2.69 8.09 179.18 1.45 4.14 16 11 N -0.33 -19.45 11.62 -56.18 -0.65 -20.11 16 12 N -0.39 -25.05 10.48 -55.02 -0.58 -25.63 16 13 C 0.32 18.44 7.53 133.23 1.00 19.45 16 14 C -0.47 -25.56 9.04 23.09 0.21 -25.35 16 15 H 0.10 4.96 7.31 -2.91 -0.02 4.94 16 16 C 0.03 1.40 5.50 85.29 0.47 1.87 16 17 N -0.79 -45.60 11.94 21.86 0.26 -45.34 16 18 Si 1.01 38.14 29.56 68.60 2.03 40.17 16 19 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 20 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 21 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 22 N -0.52 -25.76 3.26 -543.64 -1.77 -27.53 16 23 C 0.09 3.29 10.87 127.77 1.39 4.68 16 24 C -0.12 -2.75 9.70 22.27 0.22 -2.53 16 25 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 26 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 30 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 31 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 34 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.07 2.61 8.14 -2.40 -0.02 2.59 16 37 H 0.28 14.85 8.30 -92.71 -0.77 14.08 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.09 2.93 7.53 -2.39 -0.02 2.91 16 40 H 0.09 2.74 7.85 -2.39 -0.02 2.73 16 41 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 42 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -76.47 370.98 5.67 -70.79 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 1.01 Total: 23.83 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 6.61 Total: -14.74 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -2.74 Total: -118.60 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -1.23 Total: -1.44 kcal Total: -76.47 5.67 -70.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279857942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.973 kcal (2) G-P(sol) polarization free energy of solvation -76.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds