Wall clock time and date at job start Tue Mar 31 2020 11:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46860 * 2 1 4 4 C 1.50694 * 109.47082 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00396 * 89.99477 * 4 3 2 6 6 C 1.38235 * 120.00107 * 179.97438 * 5 4 3 7 7 C 1.38231 * 120.00113 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00389 * 179.97438 * 7 6 5 9 9 S 1.81000 * 109.47130 * 89.99499 * 8 7 6 10 10 C 1.76204 * 99.99786 * 180.02562 * 9 8 7 11 11 N 1.32389 * 126.25914 * 0.03042 * 10 9 8 12 12 N 1.28516 * 110.20242 * 179.97438 * 11 10 9 13 13 C 1.33098 * 109.74574 * 359.97438 * 12 11 10 14 14 C 1.39776 * 126.56257 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99778 * 186.09356 * 14 13 12 16 16 C 1.40085 * 120.00068 * 6.08606 * 14 13 12 17 17 N 1.30808 * 119.99942 * 184.12744 * 16 14 13 18 18 Si 1.86799 * 119.99669 * 4.13543 * 16 14 13 19 19 H 1.48509 * 109.46950 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.47355 * 299.99259 * 18 16 14 21 21 H 1.48501 * 109.47215 * 59.99928 * 18 16 14 22 22 N 1.36671 * 126.25846 * 180.29350 * 10 9 8 23 23 C 1.46504 * 127.15199 * 0.04162 * 22 10 9 24 24 C 1.38241 * 119.99922 * 0.25220 * 7 6 5 25 25 C 1.38238 * 119.99955 * 359.47167 * 24 7 6 26 26 H 1.09009 * 109.46879 * 60.00639 * 1 2 3 27 27 H 1.09004 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47488 * 300.00071 * 1 2 3 29 29 H 1.08996 * 109.47488 * 239.99928 * 2 1 3 30 30 H 1.09005 * 109.46405 * 119.99304 * 2 1 3 31 31 H 1.09004 * 109.47400 * 59.99151 * 3 2 1 32 32 H 1.09001 * 109.46960 * 299.99662 * 3 2 1 33 33 H 1.07998 * 119.99652 * 359.97438 * 5 4 3 34 34 H 1.08005 * 119.99903 * 180.02562 * 6 5 4 35 35 H 1.09008 * 109.46509 * 329.99834 * 8 7 6 36 36 H 1.08994 * 109.47287 * 210.00165 * 8 7 6 37 37 H 0.97000 * 120.00392 * 354.84969 * 17 16 14 38 38 H 1.09000 * 109.46642 * 270.17152 * 23 22 10 39 39 H 1.08991 * 109.47275 * 30.17219 * 23 22 10 40 40 H 1.08996 * 109.46979 * 150.17779 * 23 22 10 41 41 H 1.07997 * 119.99738 * 179.73268 * 24 7 6 42 42 H 1.07996 * 119.99979 * 180.29942 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2387 1.4424 -1.1962 6 6 5.6211 1.4429 -1.1955 7 6 6.3117 1.4433 0.0019 8 6 7.8187 1.4433 0.0027 9 16 8.4220 3.1498 0.0024 10 6 10.1600 2.8599 0.0027 11 7 10.7566 1.6781 0.0024 12 7 12.0333 1.8254 0.0021 13 6 12.3364 3.1215 0.0017 14 6 13.6191 3.6766 0.0008 15 1 13.7453 4.7447 0.0998 16 6 14.7410 2.8477 -0.1283 17 7 15.9432 3.3570 -0.0482 18 14 14.5201 1.0152 -0.4151 19 1 15.8519 0.3660 -0.5167 20 1 13.7660 0.4239 0.7193 21 1 13.7670 0.7988 -1.6766 22 7 11.1386 3.8139 0.0082 23 6 10.9571 5.2676 0.0160 24 6 5.6199 1.4377 1.1988 25 6 4.2376 1.4429 1.1982 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6765 1.9565 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.6991 1.4417 -2.1317 34 1 6.1615 1.4432 -2.1306 35 1 8.1824 0.9292 -0.8871 36 1 8.1816 0.9297 0.8929 37 1 16.0593 4.3172 0.0256 38 1 10.9094 5.6332 -1.0098 39 1 10.0303 5.5153 0.5334 40 1 11.7965 5.7358 0.5299 41 1 6.1595 1.4336 2.1343 42 1 3.6972 1.4434 2.1332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279901123.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:52 Heat of formation + Delta-G solvation = 40.963149 kcal Electronic energy + Delta-G solvation = -22483.077640 eV Core-core repulsion = 19167.146743 eV Total energy + Delta-G solvation = -3315.930897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.85965 -40.45723 -36.35539 -35.95027 -35.41662 -33.30557 -32.01041 -31.85380 -29.45522 -28.42228 -27.28566 -25.83316 -23.66100 -23.36280 -22.71515 -22.10442 -21.38723 -20.20668 -18.46358 -17.15999 -16.95543 -16.86819 -16.68516 -16.13524 -16.00036 -15.68329 -15.44193 -15.12328 -14.70310 -14.53543 -14.37756 -14.23778 -14.15573 -13.90897 -13.59598 -13.33236 -13.10677 -12.89290 -12.78974 -12.72216 -12.11275 -11.96187 -11.93576 -11.81414 -11.66758 -11.54446 -11.45305 -11.42168 -10.92510 -10.58539 -10.39112 -9.84011 -9.51335 -9.44260 -8.71419 -6.87715 -0.09257 0.49476 0.64891 0.96836 1.25211 1.52905 1.58503 1.92377 2.10929 2.19769 2.40730 2.86409 3.02781 3.58580 3.78458 3.90713 3.92409 4.06071 4.13449 4.29099 4.30081 4.31276 4.45791 4.53354 4.54466 4.57825 4.63129 4.66161 4.68963 4.85211 4.92065 5.04695 5.06899 5.15808 5.21339 5.29191 5.31751 5.35606 5.46944 5.50772 5.63418 5.67206 5.72846 5.99050 6.07605 6.37532 6.55299 7.91091 8.13612 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.034806 B = 0.002378 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.263344 B =11770.182447 C =12244.566999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.078 4.078 4 C -0.077 4.077 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.092 4.092 8 C -0.049 4.049 9 S 0.007 5.993 10 C 0.079 3.921 11 N -0.311 5.311 12 N -0.448 5.448 13 C 0.324 3.676 14 C -0.508 4.508 15 H 0.084 0.916 16 C 0.042 3.958 17 N -0.821 5.821 18 Si 1.145 2.855 19 H -0.296 1.296 20 H -0.278 1.278 21 H -0.295 1.295 22 N -0.516 5.516 23 C 0.093 3.907 24 C -0.106 4.106 25 C -0.121 4.121 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.286 0.714 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.493 -0.165 -0.048 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.115 4.115 4 C -0.078 4.078 5 C -0.139 4.139 6 C -0.126 4.126 7 C -0.094 4.094 8 C -0.197 4.197 9 S 0.236 5.764 10 C -0.296 4.296 11 N -0.153 5.153 12 N -0.297 5.297 13 C 0.077 3.923 14 C -0.549 4.549 15 H 0.102 0.898 16 C -0.178 4.178 17 N -0.446 5.446 18 Si 0.974 3.026 19 H -0.225 1.225 20 H -0.205 1.205 21 H -0.223 1.223 22 N -0.215 5.215 23 C -0.049 4.049 24 C -0.126 4.126 25 C -0.139 4.139 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -28.001 -1.938 -0.175 28.069 hybrid contribution 0.605 2.012 0.202 2.110 sum -27.396 0.074 0.028 27.396 Atomic orbital electron populations 1.21780 0.94813 1.02009 1.02279 1.21494 0.96359 0.95645 1.02059 1.20680 0.89110 0.97829 1.03875 1.20243 0.96957 0.97782 0.92863 1.21247 0.93317 1.00525 0.98804 1.21223 0.95044 0.98958 0.97374 1.19215 0.91466 1.03803 0.94948 1.22280 0.95362 0.95182 1.06874 1.84695 0.85596 1.11644 1.94476 1.26658 0.97990 0.88386 1.16546 1.74190 1.01242 1.20782 1.19107 1.73860 1.05700 1.13617 1.36474 1.21815 0.87929 0.87736 0.94780 1.19400 0.88234 0.96834 1.50469 0.89789 1.27741 0.90562 1.10580 0.88894 1.70664 1.23439 1.16821 1.33723 0.82212 0.72009 0.69550 0.78818 1.22498 1.20499 1.22288 1.46215 1.04406 1.08151 1.62770 1.21904 1.04067 0.75213 1.03755 1.21224 0.95034 0.98971 0.97370 1.21249 0.93325 1.00527 0.98793 0.92250 0.92528 0.92256 0.92291 0.92294 0.90067 0.90066 0.84000 0.85373 0.89087 0.89089 0.90232 0.90311 0.88369 0.89805 0.85369 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.25 5.92 30.60 0.18 -1.07 16 3 C -0.08 -0.85 5.34 29.85 0.16 -0.69 16 4 C -0.08 -1.24 5.13 -19.87 -0.10 -1.34 16 5 C -0.12 -2.09 9.70 22.27 0.22 -1.88 16 6 C -0.11 -2.26 9.70 22.27 0.22 -2.04 16 7 C -0.09 -2.21 5.14 -19.86 -0.10 -2.32 16 8 C -0.05 -1.44 5.35 71.24 0.38 -1.06 16 9 S 0.01 0.21 21.77 -56.49 -1.23 -1.02 16 10 C 0.08 3.57 8.09 179.18 1.45 5.01 16 11 N -0.31 -16.23 11.62 -56.17 -0.65 -16.89 16 12 N -0.45 -25.58 7.51 -55.02 -0.41 -26.00 16 13 C 0.32 17.65 7.27 133.23 0.97 18.62 16 14 C -0.51 -27.86 9.50 23.09 0.22 -27.64 16 15 H 0.08 4.44 7.47 -2.91 -0.02 4.42 16 16 C 0.04 2.34 5.52 85.29 0.47 2.81 16 17 N -0.82 -44.59 13.65 21.86 0.30 -44.30 16 18 Si 1.15 58.95 25.90 68.60 1.78 60.73 16 19 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.28 -14.99 6.76 99.48 0.67 -14.32 16 21 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 22 N -0.52 -23.79 3.26 -543.63 -1.77 -25.56 16 23 C 0.09 3.15 10.89 127.77 1.39 4.54 16 24 C -0.11 -2.25 9.70 22.27 0.22 -2.04 16 25 C -0.12 -2.09 9.70 22.27 0.22 -1.87 16 26 H 0.06 0.44 8.14 -2.38 -0.02 0.43 16 27 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.08 0.76 8.09 -2.38 -0.02 0.74 16 32 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 33 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.09 2.86 8.09 -2.39 -0.02 2.84 16 36 H 0.09 2.86 8.08 -2.40 -0.02 2.84 16 37 H 0.29 14.78 8.72 -92.71 -0.81 13.98 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.10 2.77 7.85 -2.39 -0.02 2.75 16 40 H 0.08 2.78 7.48 -2.39 -0.02 2.77 16 41 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -68.11 366.49 5.53 -62.58 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: 0.93 Total: 1.94 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 6.59 Total: -11.49 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -2.54 Total: -112.73 kcal Atomic # 14 Polarization: 58.95 SS G_CDS: 1.78 Total: 60.73 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.23 Total: -1.02 kcal Total: -68.11 5.53 -62.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279901123.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.542 kcal (2) G-P(sol) polarization free energy of solvation -68.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds