Wall clock time and date at job start Tue Mar 31 2020 11:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.53002 * 109.46999 * 85.17279 * 9 8 3 11 11 S 1.81004 * 109.46962 * 180.02562 * 10 9 8 12 12 C 1.76204 * 99.99766 * 179.97438 * 11 10 9 13 13 N 1.32389 * 126.25755 * 0.03068 * 12 11 10 14 14 N 1.28517 * 110.19937 * 179.97438 * 13 12 11 15 15 C 1.33094 * 109.74875 * 359.97438 * 14 13 12 16 16 C 1.39781 * 126.56374 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00098 * 179.97438 * 16 15 14 18 18 C 1.40081 * 119.99898 * 359.97407 * 16 15 14 19 19 N 1.30819 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99791 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47241 * 60.00089 * 20 18 16 22 22 H 1.48502 * 109.46959 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47143 * 299.99829 * 20 18 16 24 24 N 1.36673 * 126.25705 * 179.71123 * 12 11 10 25 25 C 1.46494 * 127.15062 * 359.97438 * 24 12 11 26 26 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 28 28 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 29 29 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 30 30 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 31 31 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 33 33 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 36 36 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 37 37 H 1.09000 * 109.47205 * 300.00147 * 10 9 8 38 38 H 1.08995 * 109.46975 * 60.00173 * 10 9 8 39 39 H 0.96997 * 119.99764 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47359 * 90.02204 * 25 24 12 41 41 H 1.09006 * 109.46840 * 210.01887 * 25 24 12 42 42 H 1.08996 * 109.47151 * 330.01772 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 3.0156 0.6260 2.9930 11 16 2.5908 -0.1842 4.5548 12 6 4.1073 -1.0163 4.8901 13 7 5.1978 -0.9893 4.1398 14 7 6.1222 -1.7042 4.6746 15 6 5.6780 -2.2376 5.8101 16 6 6.3928 -3.0730 6.6733 17 1 5.9257 -3.4476 7.5721 18 6 7.7150 -3.4245 6.3724 19 7 8.2807 -2.9712 5.2834 20 14 8.6700 -4.5414 7.5256 21 1 7.9701 -5.8458 7.6436 22 1 10.0355 -4.7602 6.9847 23 1 8.7633 -3.9068 8.8648 24 7 4.3750 -1.8028 5.9753 25 6 3.4698 -2.1205 7.0825 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2578 1.5015 -2.1247 32 1 3.0694 3.8259 -2.1255 33 1 3.3047 5.0489 -0.0011 34 1 2.7284 3.9470 2.1240 35 1 1.5501 2.1866 3.2337 36 1 0.9680 0.7630 2.3376 37 1 3.2801 -0.1289 2.2526 38 1 3.8622 1.2946 3.1486 39 1 9.1961 -3.2149 5.0750 40 1 2.9069 -3.0229 6.8441 41 1 4.0501 -2.2836 7.9908 42 1 2.7792 -1.2914 7.2365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280031450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:02 Heat of formation + Delta-G solvation = 71.599719 kcal Electronic energy + Delta-G solvation = -23075.569078 eV Core-core repulsion = 19760.966682 eV Total energy + Delta-G solvation = -3314.602396 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.48794 -39.76151 -34.76098 -33.69712 -33.52405 -33.24241 -29.88167 -29.34131 -28.97747 -26.50919 -25.60124 -24.38767 -23.47077 -21.66267 -20.83008 -20.54405 -20.13956 -17.34631 -16.47759 -16.19122 -16.09423 -15.50414 -15.25200 -14.73805 -14.44933 -13.94773 -13.85344 -13.80972 -13.65963 -13.33590 -13.23568 -12.67643 -12.37760 -12.30216 -12.19626 -12.05523 -11.69282 -11.44496 -11.39810 -11.28046 -11.19897 -10.92565 -10.75490 -10.64914 -10.39884 -10.11695 -9.70303 -9.59922 -8.82628 -8.68693 -8.59872 -8.41546 -8.36485 -6.83032 -6.64114 -4.56855 1.29299 1.36993 2.10935 2.85154 2.93335 3.06205 3.08485 3.37317 3.72489 3.87555 4.24826 4.43636 4.68609 4.76398 4.89045 4.94393 5.08424 5.17608 5.19428 5.33086 5.33454 5.39178 5.48969 5.53828 5.55756 5.68318 5.80886 5.85101 5.89178 5.92172 6.00361 6.04476 6.14002 6.14902 6.35626 6.47458 6.48143 6.67286 6.78560 6.89337 6.99311 7.25019 7.49734 7.90395 8.17916 8.70727 8.86793 10.28408 10.65455 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.002839 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.967587 B = 9861.445396 C =10356.278886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.072 4.072 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.125 4.125 7 C -0.110 4.110 8 C -0.071 4.071 9 C -0.069 4.069 10 C -0.083 4.083 11 S -0.063 6.063 12 C 0.048 3.952 13 N -0.285 5.285 14 N -0.334 5.334 15 C 0.346 3.654 16 C -0.448 4.448 17 H 0.083 0.917 18 C 0.078 3.922 19 N -0.737 5.737 20 Si 0.921 3.079 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.265 1.265 24 N -0.516 5.516 25 C 0.102 3.898 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.280 0.720 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.374 7.959 -6.812 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.072 4.072 4 C -0.136 4.136 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.129 4.129 8 C -0.073 4.073 9 C -0.108 4.108 10 C -0.232 4.232 11 S 0.165 5.835 12 C -0.324 4.324 13 N -0.130 5.130 14 N -0.181 5.181 15 C 0.102 3.898 16 C -0.488 4.488 17 H 0.101 0.899 18 C -0.147 4.147 19 N -0.361 5.361 20 Si 0.745 3.255 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.190 1.190 24 N -0.218 5.218 25 C -0.043 4.043 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.264 8.345 -7.497 17.372 hybrid contribution 0.929 -0.901 0.995 1.632 sum -12.335 7.444 -6.502 15.806 Atomic orbital electron populations 1.21741 0.94741 1.01801 1.01950 1.20654 0.96167 0.92727 1.03575 1.19776 0.98700 0.96120 0.92602 1.21007 1.00065 0.95146 0.97408 1.21093 1.00141 0.94847 0.97991 1.21092 1.00685 0.99933 0.92607 1.21069 0.99002 0.94550 0.98238 1.19603 0.99566 0.94059 0.94059 1.20416 0.97313 0.99095 0.93955 1.23280 1.01001 1.02041 0.96844 1.84287 1.11405 1.58988 1.28845 1.25282 1.01587 1.10402 0.95112 1.74551 0.96690 1.17223 1.24584 1.75464 1.18280 1.16017 1.08356 1.21616 0.78995 0.94871 0.94327 1.18066 0.96974 1.27148 1.06622 0.89853 1.25796 0.97375 0.95954 0.95604 1.70005 1.12939 1.32687 1.20438 0.86177 0.78607 0.80354 0.80397 1.18972 1.20071 1.18976 1.46041 1.13460 1.42919 1.19403 1.21484 0.93170 1.00378 0.89272 0.92277 0.92410 0.92809 0.91058 0.90091 0.86272 0.86364 0.86266 0.85974 0.90285 0.89844 0.89056 0.89141 0.90929 0.92596 0.90405 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.72 37.16 0.36 -0.98 16 2 C -0.09 -1.03 5.38 -27.89 -0.15 -1.18 16 3 C -0.07 -0.86 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.30 9.68 -39.58 -0.38 -1.69 16 5 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 6 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 7 C -0.11 -1.29 9.68 -39.58 -0.38 -1.67 16 8 C -0.07 -0.88 5.13 -104.63 -0.54 -1.41 16 9 C -0.07 -0.85 4.66 -27.88 -0.13 -0.98 16 10 C -0.08 -1.33 5.03 37.16 0.19 -1.14 16 11 S -0.06 -1.13 21.78 -107.50 -2.34 -3.48 16 12 C 0.05 1.17 8.09 -87.27 -0.71 0.46 16 13 N -0.28 -7.95 11.62 30.89 0.36 -7.59 16 14 N -0.33 -10.19 10.48 31.26 0.33 -9.86 16 15 C 0.35 9.80 7.53 -154.81 -1.17 8.64 16 16 C -0.45 -11.97 9.04 -38.31 -0.35 -12.32 16 17 H 0.08 2.01 7.31 -52.49 -0.38 1.63 16 18 C 0.08 2.02 5.50 -17.29 -0.10 1.92 16 19 N -0.74 -20.44 11.94 55.56 0.66 -19.78 16 20 Si 0.92 18.63 29.56 -169.99 -5.03 13.60 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 N -0.52 -12.64 3.26 -123.18 -0.40 -13.04 16 25 C 0.10 1.88 10.87 59.84 0.65 2.53 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.53 6.83 -51.93 -0.35 0.18 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 30 H 0.08 1.00 5.63 -51.93 -0.29 0.71 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 36 H 0.08 0.95 5.63 -51.93 -0.29 0.66 16 37 H 0.09 1.60 6.82 -51.92 -0.35 1.25 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 39 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.35 7.53 -51.93 -0.39 0.96 16 42 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -33.24 362.31 -10.82 -44.06 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.83 Total: 3.26 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -4.03 Total: -12.63 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.95 Total: -50.27 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.34 Total: -3.48 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.24 -10.82 -44.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280031450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.658 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds