Wall clock time and date at job start Tue Mar 31 2020 11:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 C 1.53002 * 109.46999 * 85.17279 * 9 8 3 11 11 S 1.81004 * 109.46962 * 180.02562 * 10 9 8 12 12 C 1.76204 * 99.99766 * 179.97438 * 11 10 9 13 13 N 1.32389 * 126.25755 * 0.03068 * 12 11 10 14 14 N 1.28517 * 110.19937 * 179.97438 * 13 12 11 15 15 C 1.33094 * 109.74875 * 359.97438 * 14 13 12 16 16 C 1.39781 * 126.56374 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00098 * 179.97438 * 16 15 14 18 18 C 1.40081 * 119.99898 * 359.97407 * 16 15 14 19 19 N 1.30819 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99791 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47241 * 60.00089 * 20 18 16 22 22 H 1.48502 * 109.46959 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47143 * 299.99829 * 20 18 16 24 24 N 1.36673 * 126.25705 * 179.71123 * 12 11 10 25 25 C 1.46494 * 127.15062 * 359.97438 * 24 12 11 26 26 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 28 28 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 29 29 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 30 30 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 31 31 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 33 33 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47771 * 205.17511 * 9 8 3 36 36 H 1.09007 * 109.47111 * 325.17972 * 9 8 3 37 37 H 1.09000 * 109.47205 * 300.00147 * 10 9 8 38 38 H 1.08995 * 109.46975 * 60.00173 * 10 9 8 39 39 H 0.96997 * 119.99764 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47359 * 90.02204 * 25 24 12 41 41 H 1.09006 * 109.46840 * 210.01887 * 25 24 12 42 42 H 1.08996 * 109.47151 * 330.01772 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 6 3.0156 0.6260 2.9930 11 16 2.5908 -0.1842 4.5548 12 6 4.1073 -1.0163 4.8901 13 7 5.1978 -0.9893 4.1398 14 7 6.1222 -1.7042 4.6746 15 6 5.6780 -2.2376 5.8101 16 6 6.3928 -3.0730 6.6733 17 1 5.9257 -3.4476 7.5721 18 6 7.7150 -3.4245 6.3724 19 7 8.2807 -2.9712 5.2834 20 14 8.6700 -4.5414 7.5256 21 1 7.9701 -5.8458 7.6436 22 1 10.0355 -4.7602 6.9847 23 1 8.7633 -3.9068 8.8648 24 7 4.3750 -1.8028 5.9753 25 6 3.4698 -2.1205 7.0825 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2578 1.5015 -2.1247 32 1 3.0694 3.8259 -2.1255 33 1 3.3047 5.0489 -0.0011 34 1 2.7284 3.9470 2.1240 35 1 1.5501 2.1866 3.2337 36 1 0.9680 0.7630 2.3376 37 1 3.2801 -0.1289 2.2526 38 1 3.8622 1.2946 3.1486 39 1 9.1961 -3.2149 5.0750 40 1 2.9069 -3.0229 6.8441 41 1 4.0501 -2.2836 7.9908 42 1 2.7792 -1.2914 7.2365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280031450.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:00 Heat of formation + Delta-G solvation = 54.885907 kcal Electronic energy + Delta-G solvation = -23076.293843 eV Core-core repulsion = 19760.966682 eV Total energy + Delta-G solvation = -3315.327161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.45624 -40.62724 -35.71472 -35.60818 -35.14775 -34.40023 -31.34650 -30.75787 -29.93438 -28.26606 -27.44564 -25.41409 -24.40235 -22.83040 -22.65278 -22.14546 -21.20484 -19.26110 -17.85826 -17.38191 -17.21697 -17.06114 -16.54089 -16.38620 -16.02439 -15.28229 -15.05923 -14.94846 -14.71593 -14.50991 -14.14933 -13.95215 -13.84611 -13.70021 -13.42928 -13.09576 -12.94193 -12.88520 -12.76750 -12.55488 -12.42519 -12.16216 -12.01844 -11.85844 -11.69930 -11.54474 -11.40955 -11.39007 -10.57858 -10.36517 -10.28115 -9.69137 -9.47630 -8.54676 -8.54063 -6.59446 0.30770 0.51067 0.59929 1.20164 1.28318 1.41086 1.56733 1.62026 2.18244 2.44488 2.51031 2.85436 3.33598 3.79910 3.85761 3.94638 4.02948 4.06520 4.08908 4.23579 4.32984 4.45104 4.45306 4.51984 4.57110 4.61501 4.67636 4.76268 4.83768 4.88580 4.94602 4.97886 5.06185 5.14600 5.18466 5.27649 5.31404 5.43067 5.56022 5.62329 5.64259 5.78635 6.03282 6.15741 6.21065 6.75059 6.92070 8.40756 8.64133 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.002839 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.967587 B = 9861.445396 C =10356.278886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.084 4.084 4 C -0.129 4.129 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.123 4.123 8 C -0.090 4.090 9 C -0.056 4.056 10 C -0.078 4.078 11 S -0.005 6.005 12 C 0.054 3.946 13 N -0.332 5.332 14 N -0.390 5.390 15 C 0.317 3.683 16 C -0.472 4.472 17 H 0.104 0.896 18 C 0.028 3.972 19 N -0.789 5.789 20 Si 1.008 2.992 21 H -0.253 1.253 22 H -0.272 1.272 23 H -0.253 1.253 24 N -0.522 5.522 25 C 0.093 3.907 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.284 0.716 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.022 8.136 -6.025 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.084 4.084 4 C -0.147 4.147 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.141 4.141 8 C -0.092 4.092 9 C -0.095 4.095 10 C -0.227 4.227 11 S 0.222 5.778 12 C -0.319 4.319 13 N -0.177 5.177 14 N -0.237 5.237 15 C 0.070 3.930 16 C -0.513 4.513 17 H 0.122 0.878 18 C -0.193 4.193 19 N -0.414 5.414 20 Si 0.826 3.174 21 H -0.177 1.177 22 H -0.197 1.197 23 H -0.177 1.177 24 N -0.224 5.224 25 C -0.049 4.049 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.941 8.527 -6.700 18.462 hybrid contribution 1.274 -0.826 0.653 1.653 sum -13.667 7.700 -6.048 16.813 Atomic orbital electron populations 1.21712 0.93291 1.02412 1.02343 1.20654 0.97434 0.92226 1.02847 1.19979 0.98959 0.96515 0.92995 1.21288 0.99943 0.95703 0.97779 1.21446 0.99137 0.94693 0.98997 1.21411 1.00297 1.01001 0.92378 1.21313 0.98975 0.94553 0.99243 1.19659 1.00930 0.94632 0.93980 1.20347 0.95620 0.99036 0.94490 1.23343 1.02292 1.01422 0.95630 1.84021 1.06939 1.57441 1.29354 1.26455 1.03086 1.08455 0.93934 1.74425 0.97938 1.19045 1.26256 1.75315 1.20305 1.17882 1.10172 1.22049 0.80742 0.95698 0.94474 1.18608 0.97907 1.27467 1.07280 0.87814 1.27014 0.98045 0.97078 0.97127 1.70163 1.13603 1.34658 1.22979 0.84891 0.76671 0.77998 0.77822 1.17714 1.19678 1.17674 1.46391 1.13224 1.42254 1.20515 1.21858 0.92939 1.02241 0.87910 0.91547 0.92407 0.91988 0.90657 0.91949 0.84685 0.84012 0.84199 0.85049 0.88812 0.88754 0.90840 0.91068 0.90557 0.90756 0.89306 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.72 71.98 0.70 -1.71 16 2 C -0.09 -2.03 5.38 29.85 0.16 -1.87 16 3 C -0.08 -1.96 5.13 -19.87 -0.10 -2.06 16 4 C -0.13 -2.69 9.68 22.27 0.22 -2.47 16 5 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 6 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 7 C -0.12 -2.74 9.68 22.27 0.22 -2.53 16 8 C -0.09 -2.17 5.13 -19.87 -0.10 -2.27 16 9 C -0.06 -1.33 4.66 29.85 0.14 -1.19 16 10 C -0.08 -2.52 5.03 71.98 0.36 -2.15 16 11 S 0.00 -0.17 21.78 -56.49 -1.23 -1.40 16 12 C 0.05 2.69 8.09 179.18 1.45 4.13 16 13 N -0.33 -19.36 11.62 -56.17 -0.65 -20.01 16 14 N -0.39 -24.98 10.48 -55.02 -0.58 -25.56 16 15 C 0.32 18.46 7.53 133.23 1.00 19.46 16 16 C -0.47 -25.60 9.04 23.09 0.21 -25.40 16 17 H 0.10 4.94 7.31 -2.91 -0.02 4.92 16 18 C 0.03 1.46 5.50 85.29 0.47 1.93 16 19 N -0.79 -45.48 11.94 21.86 0.26 -45.22 16 20 Si 1.01 38.08 29.56 68.60 2.03 40.11 16 21 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 24 N -0.52 -25.66 3.26 -543.63 -1.77 -27.43 16 25 C 0.09 3.27 10.87 127.77 1.39 4.66 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 0.98 6.83 -2.39 -0.02 0.96 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.51 8.05 -2.38 -0.02 1.49 16 30 H 0.06 1.56 5.63 -2.39 -0.01 1.55 16 31 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 36 H 0.09 2.02 5.63 -2.38 -0.01 2.01 16 37 H 0.07 2.67 6.82 -2.40 -0.02 2.66 16 38 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 39 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.09 2.92 7.53 -2.38 -0.02 2.90 16 42 H 0.09 2.73 7.85 -2.39 -0.02 2.71 16 Total: -1.00 -76.20 362.31 5.64 -70.56 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 1.02 Total: 25.01 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 6.56 Total: -16.05 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -2.74 Total: -118.23 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.23 Total: -1.40 kcal Total: -76.20 5.64 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280031450.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.449 kcal (2) G-P(sol) polarization free energy of solvation -76.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds