Wall clock time and date at job start Tue Mar 31 2020 11:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.50696 * 109.47242 * 59.99882 * 4 2 1 6 6 H 1.08004 * 119.99967 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00542 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99408 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46931 * 89.99755 * 9 7 5 11 11 H 1.48500 * 109.46738 * 209.99997 * 9 7 5 12 12 H 1.48501 * 109.46755 * 329.99741 * 9 7 5 13 13 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 14 14 N 1.46504 * 109.46883 * 300.00241 * 13 2 1 15 15 C 1.40107 * 119.99638 * 179.97438 * 14 13 2 16 16 C 1.38787 * 120.02731 * 359.73192 * 15 14 13 17 17 C 1.38155 * 120.00443 * 179.74364 * 16 15 14 18 18 C 1.38703 * 120.05534 * 0.50011 * 17 16 15 19 19 O 1.36002 * 119.97533 * 179.74915 * 18 17 16 20 20 C 1.42901 * 116.99887 * 0.02562 * 19 18 17 21 21 F 1.39907 * 109.46989 * 300.00223 * 20 19 18 22 22 F 1.39897 * 109.47192 * 60.00217 * 20 19 18 23 23 C 1.38691 * 120.04962 * 359.77064 * 18 17 16 24 24 C 1.38285 * 119.99614 * 359.97438 * 23 18 17 25 25 F 1.35097 * 120.02601 * 179.97438 * 24 23 18 26 26 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 27 27 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 31 31 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 32 32 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 34 34 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47002 * 59.99738 * 13 2 1 36 36 H 1.08993 * 109.46955 * 180.02562 * 13 2 1 37 37 H 0.96992 * 119.99966 * 359.97438 * 14 13 2 38 38 H 1.07997 * 119.99285 * 359.97438 * 16 15 14 39 39 H 1.08002 * 119.97429 * 180.24857 * 17 16 15 40 40 H 1.08998 * 109.47370 * 180.02562 * 20 19 18 41 41 H 1.07995 * 120.00441 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0111 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8703 -0.4824 -3.7319 8 7 2.6264 -1.5517 -3.8525 9 14 1.2482 0.3984 -5.2572 10 1 2.2271 1.4393 -5.6615 11 1 1.0824 -0.5808 -6.3612 12 1 -0.0595 1.0369 -4.9613 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0304 2.4455 15 6 1.8896 -0.5093 3.7180 16 6 2.6825 -1.6412 3.8461 17 6 3.0199 -2.1100 5.1011 18 6 2.5584 -1.4563 6.2340 19 8 2.8873 -1.9221 7.4687 20 6 3.7115 -3.0883 7.5237 21 9 3.0623 -4.1488 6.8824 22 9 4.9280 -2.8302 6.8830 23 6 1.7613 -0.3283 6.1087 24 6 1.4266 0.1458 4.8535 25 9 0.6497 1.2442 4.7308 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -1.7490 -1.2491 34 1 2.8608 -1.8832 -4.7334 35 1 1.6766 -1.7488 1.2494 36 1 3.1299 -0.7208 1.2495 37 1 0.9942 0.7583 2.3564 38 1 3.0388 -2.1534 2.9645 39 1 3.6403 -2.9885 5.2002 40 1 3.8977 -3.3528 8.5646 41 1 1.4026 0.1803 6.9913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282910507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:38 Heat of formation + Delta-G solvation = -178.128648 kcal Electronic energy + Delta-G solvation = -26470.906994 eV Core-core repulsion = 22128.573201 eV Total energy + Delta-G solvation = -4342.333793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.59912 -48.82560 -47.59015 -40.04305 -38.41878 -36.98572 -34.04772 -32.25543 -30.77957 -28.97734 -27.06382 -26.52196 -26.39389 -25.59131 -23.38266 -22.60186 -21.64777 -19.34035 -18.89542 -18.15542 -18.06584 -17.19082 -16.67930 -16.39981 -16.18461 -15.72595 -15.22481 -14.68491 -14.65005 -14.32696 -14.26070 -14.10489 -14.07912 -13.88657 -13.86029 -13.46885 -12.90846 -12.80212 -12.77553 -12.67527 -12.09529 -11.90978 -11.81199 -11.27953 -11.18088 -11.03621 -10.87074 -10.66628 -10.42181 -10.27424 -9.99432 -9.63735 -9.24617 -9.00234 -8.97252 -8.39402 -7.18728 -6.03873 -4.04867 1.04992 1.32925 2.31570 3.19839 3.28965 3.36028 3.37998 3.52441 3.53791 4.01589 4.27095 4.36667 4.42737 4.66141 4.80832 5.02350 5.20252 5.31999 5.41258 5.54169 5.56388 5.73076 5.89640 6.01645 6.07124 6.14185 6.16343 6.23217 6.35036 6.35837 6.61260 6.61551 6.82129 7.01039 7.04296 7.06911 7.35401 7.57962 7.70409 7.81753 7.94742 8.37145 8.99668 9.58611 11.07658 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.002683 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.534503 B =10433.968417 C =11333.482512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.130 3.870 14 N -0.732 5.732 15 C 0.184 3.816 16 C -0.141 4.141 17 C -0.142 4.142 18 C 0.056 3.944 19 O -0.321 6.321 20 C 0.412 3.588 21 F -0.200 7.200 22 F -0.200 7.200 23 C -0.118 4.118 24 C 0.041 3.959 25 F -0.138 7.138 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.403 0.597 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.179 0.821 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 -1.531 23.513 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.007 3.993 14 N -0.360 5.360 15 C 0.077 3.923 16 C -0.164 4.164 17 C -0.161 4.161 18 C 0.011 3.989 19 O -0.239 6.239 20 C 0.322 3.678 21 F -0.181 7.181 22 F -0.181 7.181 23 C -0.138 4.138 24 C 0.016 3.984 25 F -0.116 7.116 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.240 0.760 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.195 0.805 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.153 -1.655 23.315 23.402 hybrid contribution -0.430 0.630 -1.204 1.425 sum 0.722 -1.025 22.111 22.147 Atomic orbital electron populations 1.21752 0.95205 1.01132 1.00335 1.20869 0.95562 0.95906 0.94760 1.21753 1.00453 0.95893 1.00332 1.19088 0.96256 0.95170 0.89537 1.21180 1.31213 1.12058 0.90510 0.92263 1.25004 0.95297 0.95055 0.99095 1.69956 1.37007 1.23026 1.23484 0.86644 0.79229 0.79432 0.83008 1.20744 1.21303 1.19927 1.21688 0.98288 0.95872 0.83467 1.45055 1.56457 1.32824 1.01711 1.17933 0.95279 0.93747 0.85338 1.20416 1.01502 0.96649 0.97833 1.21329 1.01959 1.01092 0.91713 1.18064 1.01414 0.96622 0.82783 1.86558 1.66200 1.42891 1.28293 1.23300 0.73916 0.75968 0.94628 1.93106 1.81726 1.58182 1.85132 1.93103 1.46254 1.93632 1.85147 1.19898 1.00843 0.96525 0.96532 1.16630 1.00718 0.88790 0.92234 1.91456 1.72765 1.50842 1.96583 0.95158 0.91448 0.93396 0.93393 0.91461 0.95145 0.96396 0.96385 0.93025 0.92275 0.92277 0.75988 0.84166 0.84659 0.80473 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 2 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.27 8.05 37.16 0.30 -1.97 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 5 C -0.51 -13.45 7.65 -34.44 -0.26 -13.71 16 6 H 0.06 1.51 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.05 13.29 55.43 0.74 -25.32 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.13 2.11 3.81 -4.04 -0.02 2.09 16 14 N -0.73 -10.74 5.15 -58.51 -0.30 -11.04 16 15 C 0.18 2.59 6.66 -83.58 -0.56 2.04 16 16 C -0.14 -1.87 9.31 -39.41 -0.37 -2.23 16 17 C -0.14 -1.74 8.25 -39.44 -0.33 -2.07 16 18 C 0.06 0.67 6.48 -39.24 -0.25 0.41 16 19 O -0.32 -3.19 10.43 -19.75 -0.21 -3.40 16 20 C 0.41 2.96 5.98 101.05 0.60 3.56 16 21 F -0.20 -1.81 15.58 2.25 0.04 -1.78 16 22 F -0.20 -1.81 15.58 2.25 0.04 -1.78 16 23 C -0.12 -1.42 9.96 -39.40 -0.39 -1.81 16 24 C 0.04 0.55 7.31 -39.27 -0.29 0.26 16 25 F -0.14 -1.91 16.64 2.25 0.04 -1.87 16 26 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 27 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 31 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 36 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 37 H 0.40 5.85 5.65 -40.82 -0.23 5.62 16 38 H 0.14 1.79 6.73 -52.49 -0.35 1.43 16 39 H 0.14 1.54 5.08 -52.49 -0.27 1.27 16 40 H 0.18 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -29.51 342.15 -6.13 -35.64 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -5.05 Total: 2.87 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -1.55 Total: -14.58 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.44 Total: -36.36 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: -0.21 Total: -3.40 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.51 -6.13 -35.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282910507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.490 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds