Wall clock time and date at job start Tue Mar 31 2020 11:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 C 1.50696 * 109.47242 * 59.99882 * 4 2 1 6 6 H 1.08004 * 119.99967 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00542 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99408 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46931 * 89.99755 * 9 7 5 11 11 H 1.48500 * 109.46738 * 209.99997 * 9 7 5 12 12 H 1.48501 * 109.46755 * 329.99741 * 9 7 5 13 13 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 14 14 N 1.46504 * 109.46883 * 300.00241 * 13 2 1 15 15 C 1.40107 * 119.99638 * 179.97438 * 14 13 2 16 16 C 1.38787 * 120.02731 * 359.73192 * 15 14 13 17 17 C 1.38155 * 120.00443 * 179.74364 * 16 15 14 18 18 C 1.38703 * 120.05534 * 0.50011 * 17 16 15 19 19 O 1.36002 * 119.97533 * 179.74915 * 18 17 16 20 20 C 1.42901 * 116.99887 * 0.02562 * 19 18 17 21 21 F 1.39907 * 109.46989 * 300.00223 * 20 19 18 22 22 F 1.39897 * 109.47192 * 60.00217 * 20 19 18 23 23 C 1.38691 * 120.04962 * 359.77064 * 18 17 16 24 24 C 1.38285 * 119.99614 * 359.97438 * 23 18 17 25 25 F 1.35097 * 120.02601 * 179.97438 * 24 23 18 26 26 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 27 27 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 31 31 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 32 32 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 34 34 H 0.96999 * 119.99910 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47002 * 59.99738 * 13 2 1 36 36 H 1.08993 * 109.46955 * 180.02562 * 13 2 1 37 37 H 0.96992 * 119.99966 * 359.97438 * 14 13 2 38 38 H 1.07997 * 119.99285 * 359.97438 * 16 15 14 39 39 H 1.08002 * 119.97429 * 180.24857 * 17 16 15 40 40 H 1.08998 * 109.47370 * 180.02562 * 20 19 18 41 41 H 1.07995 * 120.00441 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0111 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8703 -0.4824 -3.7319 8 7 2.6264 -1.5517 -3.8525 9 14 1.2482 0.3984 -5.2572 10 1 2.2271 1.4393 -5.6615 11 1 1.0824 -0.5808 -6.3612 12 1 -0.0595 1.0369 -4.9613 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0304 2.4455 15 6 1.8896 -0.5093 3.7180 16 6 2.6825 -1.6412 3.8461 17 6 3.0199 -2.1100 5.1011 18 6 2.5584 -1.4563 6.2340 19 8 2.8873 -1.9221 7.4687 20 6 3.7115 -3.0883 7.5237 21 9 3.0623 -4.1488 6.8824 22 9 4.9280 -2.8302 6.8830 23 6 1.7613 -0.3283 6.1087 24 6 1.4266 0.1458 4.8535 25 9 0.6497 1.2442 4.7308 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -1.7490 -1.2491 34 1 2.8608 -1.8832 -4.7334 35 1 1.6766 -1.7488 1.2494 36 1 3.1299 -0.7208 1.2495 37 1 0.9942 0.7583 2.3564 38 1 3.0388 -2.1534 2.9645 39 1 3.6403 -2.9885 5.2002 40 1 3.8977 -3.3528 8.5646 41 1 1.4026 0.1803 6.9913 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282910507.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:37 Heat of formation + Delta-G solvation = -194.365154 kcal Electronic energy + Delta-G solvation = -26471.611062 eV Core-core repulsion = 22128.573201 eV Total energy + Delta-G solvation = -4343.037860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.23344 -49.87015 -48.23645 -40.97539 -39.60251 -38.18175 -35.44302 -34.10726 -31.76330 -30.16476 -28.83004 -27.99793 -27.46132 -26.58208 -24.97412 -23.75411 -22.76036 -20.23322 -19.96097 -19.15590 -18.79932 -18.37229 -18.26433 -17.63723 -17.21690 -16.76234 -16.51136 -16.13127 -15.71743 -15.51639 -15.43968 -15.27174 -14.82815 -14.75545 -14.61346 -14.56477 -14.35432 -14.25978 -14.01427 -13.94837 -13.54635 -13.15070 -12.81995 -12.77229 -12.66646 -12.51669 -12.35317 -12.30935 -12.15089 -11.96098 -11.56462 -11.00294 -10.86086 -10.76887 -10.51253 -9.99001 -8.26401 -8.15133 -6.21808 0.05393 0.33487 1.41137 1.41743 1.51665 1.64173 2.34546 2.45853 2.52848 2.63660 3.19633 3.26167 3.55521 3.74730 3.77336 3.86459 3.95991 4.08269 4.13038 4.20917 4.26742 4.54929 4.69057 4.72680 4.72793 4.93646 4.94194 5.02125 5.09252 5.11221 5.16651 5.36741 5.43578 5.47449 5.49647 5.54776 5.79168 5.88539 5.90903 6.18512 6.33697 6.69089 6.92743 7.45629 8.97084 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.002683 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.534503 B =10433.968417 C =11333.482512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.065 4.065 3 C -0.121 4.121 4 C 0.043 3.957 5 C -0.516 4.516 6 H 0.067 0.933 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.263 1.263 13 C 0.145 3.855 14 N -0.732 5.732 15 C 0.168 3.832 16 C -0.147 4.147 17 C -0.146 4.146 18 C 0.061 3.939 19 O -0.323 6.323 20 C 0.405 3.595 21 F -0.212 7.212 22 F -0.212 7.212 23 C -0.118 4.118 24 C 0.036 3.964 25 F -0.141 7.141 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.058 0.942 32 H -0.009 1.009 33 H -0.009 1.009 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.405 0.595 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.237 0.763 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -0.757 25.496 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.005 3.995 5 C -0.554 4.554 6 H 0.085 0.915 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.188 1.188 13 C 0.021 3.979 14 N -0.363 5.363 15 C 0.062 3.938 16 C -0.170 4.170 17 C -0.165 4.165 18 C 0.016 3.984 19 O -0.241 6.241 20 C 0.316 3.684 21 F -0.194 7.194 22 F -0.194 7.194 23 C -0.138 4.138 24 C 0.012 3.988 25 F -0.119 7.119 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.010 0.990 33 H 0.010 0.990 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.242 0.758 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.252 0.748 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.601 -0.874 25.333 25.355 hybrid contribution -0.213 0.323 -1.680 1.724 sum 0.388 -0.551 23.652 23.662 Atomic orbital electron populations 1.21668 0.94274 1.00925 1.00916 1.20681 0.96213 0.96107 0.93513 1.21671 1.00029 0.95166 1.00939 1.18942 0.94478 0.94242 0.91789 1.21588 1.30450 1.11990 0.91362 0.91538 1.25864 0.95694 0.95838 1.02438 1.70092 1.38690 1.24768 1.24091 0.85612 0.79071 0.78241 0.79140 1.20204 1.21353 1.18771 1.21333 0.97939 0.95436 0.83200 1.44785 1.57100 1.32979 1.01395 1.18024 0.96219 0.94395 0.85139 1.20499 1.01563 0.96630 0.98348 1.21454 1.02062 1.01405 0.91607 1.18189 1.00487 0.96241 0.83518 1.86579 1.66572 1.43971 1.26983 1.24303 0.72711 0.74625 0.96787 1.93082 1.81978 1.58636 1.85669 1.93080 1.46946 1.93647 1.85684 1.20124 1.00425 0.96519 0.96709 1.16751 1.00755 0.88740 0.92561 1.91446 1.72867 1.50990 1.96639 0.92326 0.92991 0.94024 0.94026 0.92955 0.92316 0.99032 0.99020 0.93122 0.92646 0.92654 0.75816 0.84296 0.83974 0.74775 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 2 C -0.06 -2.42 0.54 -52.18 -0.03 -2.45 16 3 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.52 -27.52 7.65 25.60 0.20 -27.32 16 6 H 0.07 3.39 5.68 -2.91 -0.02 3.38 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.40 16 8 N -0.94 -55.84 13.29 21.45 0.28 -55.56 16 9 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.15 4.70 3.81 86.38 0.33 5.03 16 14 N -0.73 -20.77 5.15 -339.02 -1.75 -22.52 16 15 C 0.17 4.56 6.66 38.14 0.25 4.82 16 16 C -0.15 -3.83 9.31 22.38 0.21 -3.62 16 17 C -0.15 -3.42 8.25 22.36 0.18 -3.24 16 18 C 0.06 1.33 6.48 22.49 0.15 1.48 16 19 O -0.32 -5.55 10.43 -93.57 -0.98 -6.53 16 20 C 0.40 4.69 5.98 113.37 0.68 5.36 16 21 F -0.21 -3.42 15.58 44.97 0.70 -2.72 16 22 F -0.21 -3.42 15.58 44.97 0.70 -2.72 16 23 C -0.12 -2.60 9.96 22.39 0.22 -2.38 16 24 C 0.04 0.92 7.31 22.47 0.16 1.08 16 25 F -0.14 -3.65 16.64 44.97 0.75 -2.90 16 26 H 0.06 1.71 6.86 -2.39 -0.02 1.70 16 27 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 31 H 0.06 1.71 6.86 -2.39 -0.02 1.70 16 32 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.06 1.83 7.94 -2.39 -0.02 1.81 16 36 H 0.06 1.82 7.96 -2.39 -0.02 1.80 16 37 H 0.40 11.06 5.65 -92.71 -0.52 10.53 16 38 H 0.14 3.56 6.73 -2.91 -0.02 3.54 16 39 H 0.14 3.08 5.08 -2.91 -0.01 3.07 16 40 H 0.24 -0.08 8.14 -2.39 -0.02 -0.10 16 41 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -64.32 342.15 6.39 -57.93 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.55 Total: 15.32 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 4.10 Total: -25.90 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.46 Total: -78.07 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.98 Total: -6.53 kcal Atomic # 9 Polarization: -10.50 SS G_CDS: 2.15 Total: -8.35 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.32 6.39 -57.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282910507.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.434 kcal (2) G-P(sol) polarization free energy of solvation -64.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds