Wall clock time and date at job start Tue Mar 31 2020 11:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47361 * 2 1 4 4 C 1.50699 * 109.47418 * 179.97438 * 3 2 1 5 5 N 1.30126 * 121.06428 * 269.98129 * 4 3 2 6 6 S 1.69948 * 105.76621 * 179.75553 * 5 4 3 7 7 C 1.72303 * 94.57325 * 0.34269 * 6 5 4 8 8 N 1.38312 * 127.50338 * 179.91516 * 7 6 5 9 9 C 1.46504 * 120.00248 * 359.68558 * 8 7 6 10 10 H 1.09008 * 109.46847 * 34.99863 * 9 8 7 11 11 C 1.52997 * 109.47349 * 154.99705 * 9 8 7 12 12 C 1.50701 * 109.47212 * 295.00023 * 11 9 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 9 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.50698 * 109.46820 * 275.00393 * 9 8 7 21 21 C 1.38239 * 120.00038 * 319.71712 * 20 9 8 22 22 C 1.38233 * 120.00108 * 179.81592 * 21 20 9 23 23 C 1.38232 * 119.99547 * 0.39864 * 22 21 20 24 24 C 1.38233 * 120.00435 * 359.85867 * 23 22 21 25 25 C 1.38233 * 120.00048 * 359.95315 * 24 23 22 26 26 N 1.31292 * 121.06021 * 89.99762 * 4 3 2 27 27 H 1.09007 * 109.46935 * 60.00063 * 1 2 3 28 28 H 1.09000 * 109.47015 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47335 * 300.00049 * 1 2 3 30 30 H 1.09002 * 109.47239 * 240.00198 * 2 1 3 31 31 H 1.08998 * 109.47253 * 120.00448 * 2 1 3 32 32 H 1.09002 * 109.46782 * 59.99918 * 3 2 1 33 33 H 1.08998 * 109.46898 * 300.00062 * 3 2 1 34 34 H 0.97006 * 120.00261 * 179.68328 * 8 7 6 35 35 H 1.09002 * 109.47153 * 175.00025 * 11 9 8 36 36 H 1.09001 * 109.46832 * 55.00216 * 11 9 8 37 37 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.99523 * 0.02562 * 21 20 9 39 39 H 1.07997 * 120.00088 * 180.23148 * 22 21 20 40 40 H 1.08005 * 119.99599 * 179.83322 * 23 22 21 41 41 H 1.08007 * 119.99657 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.99807 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2180 1.4431 1.1156 6 16 5.8574 1.4359 0.6679 7 6 5.5375 1.4428 -1.0252 8 7 6.4594 1.4428 -2.0563 9 6 7.8935 1.4433 -1.7569 10 1 8.0772 0.8542 -0.8583 11 6 8.6602 0.8336 -2.9321 12 6 8.2840 -0.6184 -3.0782 13 1 7.5692 -1.0618 -2.4008 14 6 8.8516 -1.3804 -4.0773 15 7 9.7216 -0.8403 -4.9024 16 14 8.3847 -3.1800 -4.2587 17 1 7.3930 -3.5420 -3.2143 18 1 7.7926 -3.4047 -5.6020 19 1 9.5969 -4.0238 -4.1046 20 6 8.3593 2.8590 -1.5333 21 6 7.8822 3.8785 -2.3357 22 6 8.3066 5.1776 -2.1282 23 6 9.2144 5.4559 -1.1236 24 6 9.6956 4.4356 -0.3247 25 6 9.2683 3.1371 -0.5296 26 7 4.2249 1.4423 -1.1238 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.1564 1.4424 -2.9778 35 1 9.7315 0.9146 -2.7483 36 1 8.4071 1.3684 -3.8476 37 1 10.1211 -1.3766 -5.6051 38 1 7.1752 3.6605 -3.1225 39 1 7.9310 5.9747 -2.7527 40 1 9.5481 6.4705 -0.9632 41 1 10.4053 4.6532 0.4600 42 1 9.6439 2.3401 0.0949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292801547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:19 Heat of formation + Delta-G solvation = 55.846645 kcal Electronic energy + Delta-G solvation = -23462.488071 eV Core-core repulsion = 20147.202571 eV Total energy + Delta-G solvation = -3315.285500 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.89986 -39.25492 -36.62911 -34.72907 -33.16202 -31.99782 -30.72175 -30.23443 -28.88606 -28.08607 -25.15524 -23.47378 -22.47609 -22.14876 -21.62843 -20.68076 -19.39222 -18.31180 -16.95463 -16.69718 -16.29122 -15.33148 -15.09265 -14.89792 -14.84178 -14.69307 -14.51246 -13.79079 -13.46855 -13.15525 -13.02260 -12.77603 -12.35533 -12.25361 -12.09447 -11.73076 -11.48316 -11.36559 -11.24863 -11.18300 -11.05752 -10.89439 -10.86656 -10.72404 -10.63143 -10.45612 -9.91297 -9.42811 -9.25254 -9.04454 -8.69577 -8.58334 -8.41532 -7.73898 -6.20555 -4.25407 1.16124 1.41302 1.55809 1.63399 2.18832 3.04357 3.19866 3.21499 3.29869 3.34217 4.03483 4.31300 4.54654 4.95726 5.00099 5.04187 5.09545 5.16708 5.18042 5.22089 5.33858 5.47085 5.60067 5.65337 5.72970 5.73442 5.79995 5.87464 5.95684 6.08789 6.16114 6.18611 6.22729 6.27712 6.28366 6.66174 6.69720 6.74252 6.93791 7.21338 7.29565 7.42261 7.62960 7.75079 8.07854 8.17996 8.79719 9.41264 10.89691 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.005324 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.159425 B = 5258.336215 C = 8073.487225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.029 4.029 4 C 0.308 3.692 5 N -0.519 5.519 6 S 0.161 5.839 7 C 0.362 3.638 8 N -0.630 5.630 9 C 0.185 3.815 10 H 0.087 0.913 11 C 0.026 3.974 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.282 1.282 20 C -0.090 4.090 21 C -0.101 4.101 22 C -0.123 4.123 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.107 4.107 26 N -0.598 5.598 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.419 0.581 35 H 0.043 0.957 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 8.685 8.155 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.072 4.072 4 C 0.017 3.983 5 N -0.353 5.353 6 S 0.295 5.705 7 C -0.018 4.018 8 N -0.265 5.265 9 C 0.081 3.919 10 H 0.104 0.896 11 C -0.011 4.011 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.092 4.092 21 C -0.119 4.119 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.126 4.126 26 N -0.335 5.335 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.258 0.742 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.437 8.630 9.235 14.666 hybrid contribution -0.600 -1.006 -1.533 1.929 sum -8.037 7.625 7.702 13.493 Atomic orbital electron populations 1.21742 0.95193 1.01805 1.01857 1.21457 0.95883 0.95360 1.02925 1.20211 0.84418 0.98697 1.03833 1.23029 0.99038 0.93530 0.82656 1.77439 0.97455 1.35115 1.25328 1.84872 1.13187 1.73319 0.99165 1.25246 0.90054 0.91055 0.95434 1.44336 1.03494 1.72866 1.05811 1.20668 0.77124 0.91032 1.03052 0.89556 1.19414 0.95599 0.95718 0.90417 1.21120 1.25697 0.94550 1.15213 0.92296 1.24957 0.94744 0.98611 0.95526 1.69952 1.28413 1.36453 1.17880 0.86526 0.78466 0.84909 0.78126 1.19679 1.20879 1.20835 1.20489 0.97290 0.95968 0.95473 1.20933 0.99686 0.92449 0.98839 1.21076 0.98184 0.96502 0.98334 1.21067 0.98180 0.98903 0.96407 1.21058 1.00197 0.92914 0.99714 1.21017 0.97311 0.96801 0.97447 1.67347 1.03031 1.33481 1.29649 0.92504 0.92558 0.92648 0.91296 0.91669 0.89605 0.89220 0.74192 0.93876 0.95191 0.92725 0.86372 0.86483 0.86573 0.86265 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.15 0.37 -0.93 16 2 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 3 C -0.03 -0.36 5.75 -27.88 -0.16 -0.52 16 4 C 0.31 5.08 6.82 -159.04 -1.08 3.99 16 5 N -0.52 -9.07 12.15 29.54 0.36 -8.71 16 6 S 0.16 2.74 22.71 -107.50 -2.44 0.30 16 7 C 0.36 6.46 8.53 -86.36 -0.74 5.72 16 8 N -0.63 -11.11 4.18 -56.19 -0.23 -11.35 16 9 C 0.19 3.36 2.15 -69.08 -0.15 3.21 16 10 H 0.09 1.59 7.29 -51.92 -0.38 1.21 16 11 C 0.03 0.58 4.49 -27.88 -0.13 0.45 16 12 C -0.53 -13.34 8.84 -34.44 -0.30 -13.64 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -24.66 13.29 55.43 0.74 -23.93 16 16 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.09 -1.47 4.93 -104.62 -0.52 -1.99 16 21 C -0.10 -1.56 9.32 -39.58 -0.37 -1.93 16 22 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 23 C -0.13 -1.62 10.05 -39.59 -0.40 -2.01 16 24 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 25 C -0.11 -1.59 9.67 -39.58 -0.38 -1.97 16 26 N -0.60 -10.67 10.61 -14.58 -0.15 -10.83 16 27 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.44 8.14 -51.94 -0.42 0.01 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.42 7.34 8.73 -40.82 -0.36 6.99 16 35 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.12 1.79 7.73 -52.49 -0.41 1.38 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 42 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -28.79 371.00 -12.25 -41.04 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.18 Total: 5.80 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -4.91 Total: -13.56 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.71 Total: -54.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.44 Total: 0.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.79 -12.25 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292801547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.882 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds