Wall clock time and date at job start Tue Mar 31 2020 11:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47361 * 2 1 4 4 C 1.50699 * 109.47418 * 179.97438 * 3 2 1 5 5 N 1.30126 * 121.06428 * 269.98129 * 4 3 2 6 6 S 1.69948 * 105.76621 * 179.75553 * 5 4 3 7 7 C 1.72303 * 94.57325 * 0.34269 * 6 5 4 8 8 N 1.38312 * 127.50338 * 179.91516 * 7 6 5 9 9 C 1.46504 * 120.00248 * 359.68558 * 8 7 6 10 10 H 1.09008 * 109.46847 * 34.99863 * 9 8 7 11 11 C 1.52997 * 109.47349 * 154.99705 * 9 8 7 12 12 C 1.50701 * 109.47212 * 295.00023 * 11 9 8 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 9 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.50698 * 109.46820 * 275.00393 * 9 8 7 21 21 C 1.38239 * 120.00038 * 319.71712 * 20 9 8 22 22 C 1.38233 * 120.00108 * 179.81592 * 21 20 9 23 23 C 1.38232 * 119.99547 * 0.39864 * 22 21 20 24 24 C 1.38233 * 120.00435 * 359.85867 * 23 22 21 25 25 C 1.38233 * 120.00048 * 359.95315 * 24 23 22 26 26 N 1.31292 * 121.06021 * 89.99762 * 4 3 2 27 27 H 1.09007 * 109.46935 * 60.00063 * 1 2 3 28 28 H 1.09000 * 109.47015 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47335 * 300.00049 * 1 2 3 30 30 H 1.09002 * 109.47239 * 240.00198 * 2 1 3 31 31 H 1.08998 * 109.47253 * 120.00448 * 2 1 3 32 32 H 1.09002 * 109.46782 * 59.99918 * 3 2 1 33 33 H 1.08998 * 109.46898 * 300.00062 * 3 2 1 34 34 H 0.97006 * 120.00261 * 179.68328 * 8 7 6 35 35 H 1.09002 * 109.47153 * 175.00025 * 11 9 8 36 36 H 1.09001 * 109.46832 * 55.00216 * 11 9 8 37 37 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.99523 * 0.02562 * 21 20 9 39 39 H 1.07997 * 120.00088 * 180.23148 * 22 21 20 40 40 H 1.08005 * 119.99599 * 179.83322 * 23 22 21 41 41 H 1.08007 * 119.99657 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.99807 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2180 1.4431 1.1156 6 16 5.8574 1.4359 0.6679 7 6 5.5375 1.4428 -1.0252 8 7 6.4594 1.4428 -2.0563 9 6 7.8935 1.4433 -1.7569 10 1 8.0772 0.8542 -0.8583 11 6 8.6602 0.8336 -2.9321 12 6 8.2840 -0.6184 -3.0782 13 1 7.5692 -1.0618 -2.4008 14 6 8.8516 -1.3804 -4.0773 15 7 9.7216 -0.8403 -4.9024 16 14 8.3847 -3.1800 -4.2587 17 1 7.3930 -3.5420 -3.2143 18 1 7.7926 -3.4047 -5.6020 19 1 9.5969 -4.0238 -4.1046 20 6 8.3593 2.8590 -1.5333 21 6 7.8822 3.8785 -2.3357 22 6 8.3066 5.1776 -2.1282 23 6 9.2144 5.4559 -1.1236 24 6 9.6956 4.4356 -0.3247 25 6 9.2683 3.1371 -0.5296 26 7 4.2249 1.4423 -1.1238 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.1564 1.4424 -2.9778 35 1 9.7315 0.9146 -2.7483 36 1 8.4071 1.3684 -3.8476 37 1 10.1211 -1.3766 -5.6051 38 1 7.1752 3.6605 -3.1225 39 1 7.9310 5.9747 -2.7527 40 1 9.5481 6.4705 -0.9632 41 1 10.4053 4.6532 0.4600 42 1 9.6439 2.3401 0.0949 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292801547.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:18 Heat of formation + Delta-G solvation = 42.682317 kcal Electronic energy + Delta-G solvation = -23463.058919 eV Core-core repulsion = 20147.202571 eV Total energy + Delta-G solvation = -3315.856348 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22638 -40.45124 -37.96621 -35.79683 -34.95137 -33.41800 -31.83714 -31.47550 -30.54033 -29.07627 -26.81120 -24.72635 -23.96567 -23.35217 -22.64001 -21.96641 -20.68518 -19.65287 -18.67525 -18.08062 -17.67155 -16.80869 -16.48596 -16.26504 -16.05092 -15.80134 -15.67387 -15.08788 -14.70506 -14.40052 -14.20976 -14.00571 -13.74823 -13.48607 -13.41355 -13.06321 -12.96476 -12.72259 -12.61239 -12.58918 -12.44463 -12.25910 -12.12057 -11.95338 -11.83182 -11.64088 -11.59590 -11.28506 -10.63915 -10.63170 -10.42079 -9.78038 -9.60148 -9.12431 -8.24636 -6.34336 -0.20979 0.03298 0.42879 0.54238 0.86586 1.35658 1.39390 1.49297 1.71529 1.82884 2.36596 2.92285 3.10634 3.32236 3.79925 3.93296 4.03634 4.11778 4.17440 4.19770 4.28095 4.32716 4.51077 4.56580 4.67984 4.71560 4.74331 4.81189 4.90906 4.96206 5.08221 5.17297 5.20790 5.26200 5.30154 5.36450 5.43512 5.54754 5.58794 5.63873 5.72688 5.85962 6.09608 6.15239 6.19664 6.78075 6.81660 7.35200 8.85960 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.007863 B = 0.005324 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3560.159425 B = 5258.336215 C = 8073.487225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.028 4.028 4 C 0.303 3.697 5 N -0.533 5.533 6 S 0.167 5.833 7 C 0.353 3.647 8 N -0.631 5.631 9 C 0.202 3.798 10 H 0.081 0.919 11 C 0.038 3.962 12 C -0.532 4.532 13 H 0.054 0.946 14 C 0.016 3.984 15 N -0.922 5.922 16 Si 0.950 3.050 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.278 1.278 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.121 4.121 26 N -0.611 5.611 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.417 0.583 35 H 0.021 0.979 36 H 0.012 0.988 37 H 0.264 0.736 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.926 9.684 9.215 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.070 4.070 4 C 0.013 3.987 5 N -0.367 5.367 6 S 0.301 5.699 7 C -0.026 4.026 8 N -0.265 5.265 9 C 0.098 3.902 10 H 0.099 0.901 11 C 0.000 4.000 12 C -0.570 4.570 13 H 0.072 0.928 14 C -0.183 4.183 15 N -0.562 5.562 16 Si 0.776 3.224 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.112 4.112 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.140 4.140 26 N -0.348 5.348 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.255 0.745 35 H 0.040 0.960 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.316 9.630 10.310 16.377 hybrid contribution -0.328 -1.248 -1.831 2.240 sum -8.644 8.382 8.480 14.727 Atomic orbital electron populations 1.21704 0.92808 1.02588 1.02882 1.21415 0.97862 0.94310 1.01593 1.20427 0.81739 0.99647 1.05209 1.23711 1.00666 0.92304 0.81973 1.77452 0.97513 1.35920 1.25811 1.84777 1.13398 1.73273 0.98427 1.25331 0.90284 0.91279 0.95750 1.44203 1.03361 1.73154 1.05792 1.20255 0.76920 0.92411 1.00604 0.90075 1.19147 0.94853 0.94490 0.91504 1.21412 1.24949 0.96000 1.14616 0.92789 1.25678 0.94864 1.02285 0.95495 1.70049 1.29648 1.37846 1.18635 0.85619 0.78163 0.80638 0.77959 1.19611 1.20564 1.20364 1.20330 0.98896 0.94790 0.97174 1.21027 1.00256 0.93458 0.98961 1.21392 0.98153 0.96110 0.98894 1.21501 0.96922 1.00445 0.95195 1.21432 1.00112 0.92033 1.00210 1.21229 0.97185 0.98215 0.97338 1.67417 1.03078 1.33784 1.30552 0.91702 0.91939 0.91394 0.93014 0.92630 0.87901 0.88071 0.74455 0.96040 0.96952 0.92653 0.87067 0.84247 0.83254 0.83322 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.91 71.98 0.71 -1.47 16 2 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 3 C -0.03 -0.65 5.75 29.85 0.17 -0.48 16 4 C 0.30 9.81 6.82 139.39 0.95 10.76 16 5 N -0.53 -18.28 12.15 -60.45 -0.73 -19.01 16 6 S 0.17 5.70 22.71 -56.49 -1.28 4.41 16 7 C 0.35 12.73 8.53 178.86 1.53 14.25 16 8 N -0.63 -22.87 4.18 -331.69 -1.39 -24.26 16 9 C 0.20 7.56 2.15 44.24 0.10 7.66 16 10 H 0.08 3.08 7.29 -2.38 -0.02 3.06 16 11 C 0.04 1.74 4.49 29.85 0.13 1.88 16 12 C -0.53 -27.53 8.84 25.60 0.23 -27.30 16 13 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 14 C 0.02 0.86 5.46 84.66 0.46 1.33 16 15 N -0.92 -52.23 13.29 21.45 0.28 -51.95 16 16 Si 0.95 42.82 29.54 68.60 2.03 44.85 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 20 C -0.11 -3.63 4.93 -19.87 -0.10 -3.73 16 21 C -0.12 -3.68 9.32 22.27 0.21 -3.47 16 22 C -0.13 -3.25 10.05 22.27 0.22 -3.03 16 23 C -0.12 -2.76 10.05 22.27 0.22 -2.53 16 24 C -0.12 -2.85 10.05 22.27 0.22 -2.63 16 25 C -0.12 -3.51 9.67 22.27 0.22 -3.29 16 26 N -0.61 -21.77 10.61 -200.03 -2.12 -23.89 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.42 15.22 8.73 -92.70 -0.81 14.41 16 35 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.11 3.48 7.73 -2.91 -0.02 3.46 16 39 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 41 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.13 3.46 8.04 -2.91 -0.02 3.44 16 Total: -1.00 -61.97 371.00 2.45 -59.52 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.21 Total: 24.65 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 5.46 Total: -14.32 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -3.96 Total: -119.11 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.28 Total: 4.41 kcal Total: -61.97 2.45 -59.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292801547.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.200 kcal (2) G-P(sol) polarization free energy of solvation -61.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds