Wall clock time and date at job start Tue Mar 31 2020 11:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33878 * 125.80476 * 2 1 4 4 C 1.32359 * 109.13629 * 180.02562 * 3 2 1 5 5 S 1.76247 * 141.95306 * 179.97438 * 4 3 2 6 6 C 1.75770 * 90.69837 * 180.02562 * 5 4 3 7 7 C 1.30911 * 109.82312 * 0.02562 * 6 5 4 8 8 C 1.50705 * 121.83877 * 180.02562 * 7 6 5 9 9 C 1.52995 * 117.49928 * 33.87308 * 8 7 6 10 10 C 1.53000 * 117.49878 * 325.21318 * 8 7 6 11 11 N 1.35143 * 108.82168 * 0.02562 * 4 3 2 12 12 C 1.34335 * 125.80476 * 180.02562 * 2 1 3 13 13 C 1.50697 * 126.44155 * 359.94366 * 12 2 1 14 14 N 1.46496 * 109.47360 * 270.61844 * 13 12 2 15 15 C 1.36931 * 119.99868 * 275.05741 * 14 13 12 16 16 H 1.08000 * 120.00245 * 308.30014 * 15 14 13 17 17 C 1.38814 * 120.00431 * 128.30178 * 15 14 13 18 18 N 1.31625 * 119.99705 * 346.23454 * 17 15 14 19 19 Si 1.86794 * 120.00479 * 166.22858 * 17 15 14 20 20 H 1.48507 * 109.47111 * 60.00185 * 19 17 15 21 21 H 1.48503 * 109.47334 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47119 * 300.00522 * 19 17 15 23 23 C 1.46496 * 119.99945 * 95.05616 * 14 13 12 24 24 C 1.52999 * 117.49825 * 182.48934 * 23 14 13 25 25 C 1.52998 * 117.50118 * 113.82965 * 23 14 13 26 26 H 1.09005 * 109.47144 * 269.96278 * 1 2 3 27 27 H 1.08997 * 109.47264 * 29.95966 * 1 2 3 28 28 H 1.08998 * 109.46605 * 149.96244 * 1 2 3 29 29 H 1.08004 * 125.08860 * 180.02562 * 6 5 4 30 30 H 1.09005 * 115.54644 * 179.54966 * 8 7 6 31 31 H 1.08995 * 117.50095 * 0.02562 * 9 8 7 32 32 H 1.09006 * 117.49429 * 145.01848 * 9 8 7 33 33 H 1.09003 * 117.49641 * 214.98172 * 10 8 7 34 34 H 1.08996 * 117.49873 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.47028 * 30.62101 * 13 12 2 36 36 H 1.09007 * 109.46970 * 150.61580 * 13 12 2 37 37 H 0.97000 * 120.00039 * 185.05253 * 18 17 15 38 38 H 1.09002 * 115.54983 * 328.15298 * 23 14 13 39 39 H 1.09002 * 117.49830 * 359.97438 * 24 23 14 40 40 H 1.09004 * 117.50228 * 145.01807 * 24 23 14 41 41 H 1.09001 * 117.49974 * 214.97747 * 25 23 14 42 42 H 1.08997 * 117.49458 * 359.97437 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0858 0.0000 4 6 3.5582 0.7061 -0.0006 5 16 5.1994 1.3486 -0.0015 6 6 5.8601 -0.2802 -0.0023 7 6 4.8857 -1.1545 -0.0024 8 6 5.1490 -2.6384 -0.0026 9 6 6.3818 -3.1372 0.7539 10 6 6.3699 -3.1392 -0.7768 11 7 3.6090 -0.6444 -0.0015 12 6 2.2929 -1.0895 -0.0005 13 6 1.8334 -2.5247 0.0001 14 7 1.6714 -2.9851 1.3813 15 6 2.7504 -3.4664 2.0736 16 1 3.3673 -4.2406 1.6418 17 6 3.0512 -2.9594 3.3303 18 7 2.4825 -1.8470 3.7445 19 14 4.2630 -3.8559 4.4336 20 1 5.5815 -3.9396 3.7555 21 1 4.4096 -3.1153 5.7124 22 1 3.7608 -5.2258 4.7102 23 6 0.3551 -2.9305 2.0220 24 6 0.2623 -3.3710 3.4842 25 6 -0.3127 -4.2600 2.3788 26 1 -0.3634 -0.0007 1.0277 27 1 -0.3633 0.8903 -0.5132 28 1 -0.3632 -0.8897 -0.5144 29 1 6.9124 -0.5234 -0.0027 30 1 4.2627 -3.2730 0.0051 31 1 7.0022 -2.3922 1.2519 32 1 6.3067 -4.1002 1.2590 33 1 6.2870 -4.1035 -1.2782 34 1 6.9824 -2.3955 -1.2864 35 1 0.8799 -2.6011 -0.5226 36 1 2.5751 -3.1438 -0.5047 37 1 2.7466 -1.4532 4.5908 38 1 -0.2906 -2.1132 1.7007 39 1 1.1806 -3.7018 3.9694 40 1 -0.4447 -2.8438 4.1249 41 1 -1.3978 -4.3173 2.2925 42 1 0.2272 -5.1753 2.1364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297298752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:32 Heat of formation + Delta-G solvation = 177.012771 kcal Electronic energy + Delta-G solvation = -25738.401157 eV Core-core repulsion = 22428.369814 eV Total energy + Delta-G solvation = -3310.031343 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.97777 -38.02844 -37.03882 -34.95772 -33.11620 -31.97275 -30.46505 -29.61396 -26.78887 -25.27038 -24.46219 -23.36650 -22.20838 -21.10230 -20.93101 -19.94488 -19.82920 -18.43683 -17.59596 -16.53808 -15.66238 -15.57878 -14.90436 -14.76406 -14.64051 -14.33098 -13.80879 -13.50457 -13.15901 -12.85049 -12.73127 -12.28133 -12.04203 -11.80334 -11.66797 -11.56597 -11.38454 -11.25818 -11.04290 -10.96379 -10.76356 -10.55068 -10.36772 -10.22124 -10.00570 -9.95698 -9.65778 -9.45080 -9.30813 -8.97936 -8.28216 -7.92148 -6.91539 -6.42115 -5.90896 -3.66881 1.44917 1.52153 2.12532 2.83494 3.20425 3.24083 3.28414 3.30673 3.57675 4.17480 4.30248 4.69777 5.06247 5.09167 5.13236 5.19657 5.30522 5.38022 5.43100 5.52800 5.65814 5.72835 5.84015 5.91823 6.01812 6.07411 6.15207 6.17430 6.25617 6.28813 6.42383 6.44076 6.48680 6.52367 6.67395 6.70530 6.95533 7.02420 7.22704 7.30441 7.59748 7.63695 7.69180 8.44689 8.46663 9.06620 9.56482 10.26395 11.05838 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.007710 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.844554 B = 3630.884957 C = 4920.971147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.021 3.979 3 N -0.456 5.456 4 C 0.125 3.875 5 S 0.138 5.862 6 C -0.263 4.263 7 C 0.165 3.835 8 C -0.099 4.099 9 C -0.153 4.153 10 C -0.173 4.173 11 N -0.383 5.383 12 C 0.026 3.974 13 C 0.210 3.790 14 N -0.536 5.536 15 C -0.287 4.287 16 H 0.054 0.946 17 C 0.050 3.950 18 N -0.853 5.853 19 Si 0.877 3.123 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.149 3.851 24 C -0.150 4.150 25 C -0.242 4.242 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.182 0.818 30 H 0.139 0.861 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.257 0.743 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.139 -0.600 -8.009 9.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.109 4.109 3 N -0.180 5.180 4 C -0.241 4.241 5 S 0.387 5.613 6 C -0.399 4.399 7 C 0.054 3.946 8 C -0.120 4.120 9 C -0.191 4.191 10 C -0.211 4.211 11 N -0.062 5.062 12 C -0.091 4.091 13 C 0.083 3.917 14 N -0.253 5.253 15 C -0.417 4.417 16 H 0.072 0.928 17 C -0.156 4.156 18 N -0.489 5.489 19 Si 0.705 3.295 20 H -0.200 1.200 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.041 3.959 24 C -0.189 4.189 25 C -0.283 4.283 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.199 0.801 30 H 0.157 0.843 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.376 1.538 -7.813 9.087 hybrid contribution 0.524 -2.263 1.232 2.629 sum 4.900 -0.725 -6.582 8.237 Atomic orbital electron populations 1.19985 0.87540 1.01650 1.02275 1.20226 0.95982 0.87292 1.07432 1.70280 0.96574 1.30047 1.21115 1.25644 0.99649 0.84287 1.14508 1.84074 0.88467 1.04218 1.84557 1.24338 1.02765 0.94925 1.17921 1.18081 0.81778 0.95163 0.99603 1.20919 0.95472 0.89656 1.05969 1.23015 0.99132 1.03325 0.93583 1.23159 1.00201 1.02856 0.94840 1.43357 1.04997 1.06871 1.50990 1.22762 0.78708 0.99882 1.07756 1.19699 0.97979 0.84946 0.89120 1.43277 1.03507 1.69218 1.09290 1.18605 1.07290 1.16389 0.99386 0.92835 1.25490 0.95907 0.94751 0.99441 1.70056 1.41030 1.16730 1.21114 0.86820 0.82071 0.79956 0.80628 1.19955 1.21465 1.20368 1.20700 0.87067 0.92306 0.95798 1.22955 1.01653 1.02100 0.92146 1.23521 0.97463 0.98012 1.09319 0.91206 0.91904 0.91477 0.80065 0.84345 0.88707 0.88007 0.88222 0.88650 0.91427 0.93135 0.93269 0.90181 0.87491 0.91918 0.91650 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 9.62 36.01 0.35 -0.63 16 2 C 0.02 0.44 7.06 -83.08 -0.59 -0.15 16 3 N -0.46 -10.36 11.33 -9.77 -0.11 -10.47 16 4 C 0.12 2.69 8.93 -88.71 -0.79 1.90 16 5 S 0.14 2.34 23.37 -107.50 -2.51 -0.17 16 6 C -0.26 -4.19 9.64 29.04 0.28 -3.91 16 7 C 0.16 3.04 6.54 -81.75 -0.53 2.51 16 8 C -0.10 -1.66 5.92 -91.77 -0.54 -2.20 16 9 C -0.15 -2.25 9.90 -26.70 -0.26 -2.52 16 10 C -0.17 -2.15 9.90 -26.69 -0.26 -2.41 16 11 N -0.38 -8.12 3.19 -55.40 -0.18 -8.30 16 12 C 0.03 0.55 6.75 -80.75 -0.54 0.00 16 13 C 0.21 4.20 5.62 -5.20 -0.03 4.17 16 14 N -0.54 -12.08 2.63 -167.03 -0.44 -12.52 16 15 C -0.29 -6.92 7.65 -15.06 -0.12 -7.04 16 16 H 0.05 1.30 7.15 -52.49 -0.38 0.93 16 17 C 0.05 1.25 3.15 -17.43 -0.05 1.20 16 18 N -0.85 -23.15 11.42 55.49 0.63 -22.52 16 19 Si 0.88 20.02 29.47 -169.99 -5.01 15.01 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.15 3.26 6.04 -67.93 -0.41 2.85 16 24 C -0.15 -3.38 8.29 -26.70 -0.22 -3.60 16 25 C -0.24 -4.84 10.37 -26.70 -0.28 -5.11 16 26 H 0.07 1.26 7.61 -51.93 -0.40 0.87 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.01 7.14 -51.93 -0.37 0.64 16 29 H 0.18 2.24 7.16 -52.48 -0.38 1.87 16 30 H 0.14 2.59 3.77 -51.93 -0.20 2.39 16 31 H 0.09 1.34 7.48 -51.93 -0.39 0.95 16 32 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.04 7.53 -51.93 -0.39 0.64 16 35 H 0.07 1.20 7.04 -51.93 -0.37 0.83 16 36 H 0.05 0.97 6.00 -51.92 -0.31 0.66 16 37 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 38 H 0.08 1.69 6.99 -51.93 -0.36 1.33 16 39 H 0.11 2.69 5.03 -51.93 -0.26 2.43 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 348.17 15.07 5.25 5.25 Total: -1.00 -29.36 348.17 -11.84 -41.21 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.46 Total: 7.46 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -4.01 Total: -14.94 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.09 Total: -53.80 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.01 Total: 15.01 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.51 Total: -0.17 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.36 -11.84 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297298752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.218 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds