Wall clock time and date at job start Tue Mar 31 2020 11:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33878 * 125.80476 * 2 1 4 4 C 1.32359 * 109.13629 * 180.02562 * 3 2 1 5 5 S 1.76247 * 141.95306 * 179.97438 * 4 3 2 6 6 C 1.75770 * 90.69837 * 180.02562 * 5 4 3 7 7 C 1.30911 * 109.82312 * 0.02562 * 6 5 4 8 8 C 1.50705 * 121.83877 * 180.02562 * 7 6 5 9 9 C 1.52995 * 117.49928 * 33.87308 * 8 7 6 10 10 C 1.53000 * 117.49878 * 325.21318 * 8 7 6 11 11 N 1.35143 * 108.82168 * 0.02562 * 4 3 2 12 12 C 1.34335 * 125.80476 * 180.02562 * 2 1 3 13 13 C 1.50697 * 126.44155 * 359.94366 * 12 2 1 14 14 N 1.46496 * 109.47360 * 270.61844 * 13 12 2 15 15 C 1.36931 * 119.99868 * 275.05741 * 14 13 12 16 16 H 1.08000 * 120.00245 * 308.30014 * 15 14 13 17 17 C 1.38814 * 120.00431 * 128.30178 * 15 14 13 18 18 N 1.31625 * 119.99705 * 346.23454 * 17 15 14 19 19 Si 1.86794 * 120.00479 * 166.22858 * 17 15 14 20 20 H 1.48507 * 109.47111 * 60.00185 * 19 17 15 21 21 H 1.48503 * 109.47334 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47119 * 300.00522 * 19 17 15 23 23 C 1.46496 * 119.99945 * 95.05616 * 14 13 12 24 24 C 1.52999 * 117.49825 * 182.48934 * 23 14 13 25 25 C 1.52998 * 117.50118 * 113.82965 * 23 14 13 26 26 H 1.09005 * 109.47144 * 269.96278 * 1 2 3 27 27 H 1.08997 * 109.47264 * 29.95966 * 1 2 3 28 28 H 1.08998 * 109.46605 * 149.96244 * 1 2 3 29 29 H 1.08004 * 125.08860 * 180.02562 * 6 5 4 30 30 H 1.09005 * 115.54644 * 179.54966 * 8 7 6 31 31 H 1.08995 * 117.50095 * 0.02562 * 9 8 7 32 32 H 1.09006 * 117.49429 * 145.01848 * 9 8 7 33 33 H 1.09003 * 117.49641 * 214.98172 * 10 8 7 34 34 H 1.08996 * 117.49873 * 359.97438 * 10 8 7 35 35 H 1.09004 * 109.47028 * 30.62101 * 13 12 2 36 36 H 1.09007 * 109.46970 * 150.61580 * 13 12 2 37 37 H 0.97000 * 120.00039 * 185.05253 * 18 17 15 38 38 H 1.09002 * 115.54983 * 328.15298 * 23 14 13 39 39 H 1.09002 * 117.49830 * 359.97438 * 24 23 14 40 40 H 1.09004 * 117.50228 * 145.01807 * 24 23 14 41 41 H 1.09001 * 117.49974 * 214.97747 * 25 23 14 42 42 H 1.08997 * 117.49458 * 359.97437 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2903 1.0858 0.0000 4 6 3.5582 0.7061 -0.0006 5 16 5.1994 1.3486 -0.0015 6 6 5.8601 -0.2802 -0.0023 7 6 4.8857 -1.1545 -0.0024 8 6 5.1490 -2.6384 -0.0026 9 6 6.3818 -3.1372 0.7539 10 6 6.3699 -3.1392 -0.7768 11 7 3.6090 -0.6444 -0.0015 12 6 2.2929 -1.0895 -0.0005 13 6 1.8334 -2.5247 0.0001 14 7 1.6714 -2.9851 1.3813 15 6 2.7504 -3.4664 2.0736 16 1 3.3673 -4.2406 1.6418 17 6 3.0512 -2.9594 3.3303 18 7 2.4825 -1.8470 3.7445 19 14 4.2630 -3.8559 4.4336 20 1 5.5815 -3.9396 3.7555 21 1 4.4096 -3.1153 5.7124 22 1 3.7608 -5.2258 4.7102 23 6 0.3551 -2.9305 2.0220 24 6 0.2623 -3.3710 3.4842 25 6 -0.3127 -4.2600 2.3788 26 1 -0.3634 -0.0007 1.0277 27 1 -0.3633 0.8903 -0.5132 28 1 -0.3632 -0.8897 -0.5144 29 1 6.9124 -0.5234 -0.0027 30 1 4.2627 -3.2730 0.0051 31 1 7.0022 -2.3922 1.2519 32 1 6.3067 -4.1002 1.2590 33 1 6.2870 -4.1035 -1.2782 34 1 6.9824 -2.3955 -1.2864 35 1 0.8799 -2.6011 -0.5226 36 1 2.5751 -3.1438 -0.5047 37 1 2.7466 -1.4532 4.5908 38 1 -0.2906 -2.1132 1.7007 39 1 1.1806 -3.7018 3.9694 40 1 -0.4447 -2.8438 4.1249 41 1 -1.3978 -4.3173 2.2925 42 1 0.2272 -5.1753 2.1364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297298752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:31 Heat of formation + Delta-G solvation = 163.617670 kcal Electronic energy + Delta-G solvation = -25738.982012 eV Core-core repulsion = 22428.369814 eV Total energy + Delta-G solvation = -3310.612198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.47624 -39.28222 -38.76285 -36.30802 -34.79376 -33.79912 -31.87927 -31.21689 -28.33206 -26.89930 -25.84379 -25.04756 -23.24890 -22.73813 -22.43625 -21.65438 -21.32019 -19.85423 -19.08078 -18.31908 -17.25244 -16.87985 -16.63505 -16.39314 -16.04798 -15.63581 -15.43702 -15.01280 -14.72740 -14.40626 -14.20891 -13.67984 -13.53130 -13.40641 -13.10799 -13.06072 -12.81302 -12.75569 -12.74147 -12.41951 -12.28569 -12.10677 -11.96933 -11.86711 -11.37666 -11.26815 -11.13515 -11.06837 -10.93870 -10.69406 -10.16082 -9.39515 -8.40644 -8.21378 -7.78320 -5.58097 0.02587 0.12224 0.77975 1.35420 1.37943 1.43076 1.44844 1.81813 2.00375 2.44188 3.04577 3.25798 3.46856 3.55038 3.63813 3.71097 3.93523 4.10698 4.12786 4.21131 4.34046 4.39425 4.47194 4.53635 4.62857 4.72240 4.75849 4.78037 4.83571 4.95570 5.00777 5.01107 5.05137 5.08167 5.23027 5.24119 5.31675 5.50978 5.54128 5.70009 5.81108 5.81395 6.17006 6.52419 6.90201 7.23542 7.75961 8.41697 9.12739 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.007710 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.844554 B = 3630.884957 C = 4920.971147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.004 3.996 3 N -0.492 5.492 4 C 0.093 3.907 5 S 0.177 5.823 6 C -0.245 4.245 7 C 0.130 3.870 8 C -0.127 4.127 9 C -0.160 4.160 10 C -0.133 4.133 11 N -0.390 5.390 12 C 0.005 3.995 13 C 0.215 3.785 14 N -0.548 5.548 15 C -0.269 4.269 16 H 0.051 0.949 17 C 0.016 3.984 18 N -0.886 5.886 19 Si 0.917 3.083 20 H -0.258 1.258 21 H -0.305 1.305 22 H -0.279 1.279 23 C 0.137 3.863 24 C -0.167 4.167 25 C -0.210 4.210 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.222 0.778 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.243 0.757 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -1.435 -9.558 11.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.126 4.126 3 N -0.217 5.217 4 C -0.272 4.272 5 S 0.425 5.575 6 C -0.381 4.381 7 C 0.020 3.980 8 C -0.148 4.148 9 C -0.198 4.198 10 C -0.170 4.170 11 N -0.068 5.068 12 C -0.112 4.112 13 C 0.088 3.912 14 N -0.265 5.265 15 C -0.399 4.399 16 H 0.069 0.931 17 C -0.186 4.186 18 N -0.525 5.525 19 Si 0.745 3.255 20 H -0.183 1.183 21 H -0.232 1.232 22 H -0.205 1.205 23 C 0.030 3.970 24 C -0.206 4.206 25 C -0.250 4.250 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.239 0.761 30 H 0.131 0.869 31 H 0.120 0.880 32 H 0.112 0.888 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.667 0.672 -9.389 10.987 hybrid contribution 0.178 -1.987 1.648 2.587 sum 5.845 -1.314 -7.741 9.788 Atomic orbital electron populations 1.20037 0.85450 1.03437 1.01965 1.20870 0.97600 0.87187 1.06919 1.70251 0.97583 1.31007 1.22877 1.26478 1.01027 0.85309 1.14361 1.83895 0.85554 1.04483 1.83570 1.24876 1.04127 0.93882 1.15182 1.18557 0.81214 0.96597 1.01627 1.20823 0.95907 0.88347 1.09727 1.23078 0.98118 1.02979 0.95591 1.23294 0.96555 1.03825 0.93318 1.43586 1.05846 1.06911 1.50498 1.22910 0.79288 1.00267 1.08759 1.19729 0.99195 0.84441 0.87836 1.43402 1.03401 1.69686 1.09987 1.18659 1.06888 1.15349 0.99030 0.93134 1.25866 0.97175 0.95030 1.00490 1.70199 1.42996 1.18498 1.20836 0.86164 0.81679 0.78719 0.78918 1.18264 1.23205 1.20492 1.20833 0.87280 0.93700 0.95216 1.22817 1.01064 1.03970 0.92725 1.23462 0.98989 0.96505 1.06086 0.92373 0.90587 0.89226 0.76148 0.86922 0.88047 0.88811 0.86483 0.86280 0.89289 0.92679 0.94723 0.89601 0.90293 0.91761 0.88549 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.76 9.62 71.24 0.69 -1.07 16 2 C 0.00 0.18 7.06 41.36 0.29 0.47 16 3 N -0.49 -22.65 11.33 -184.82 -2.09 -24.74 16 4 C 0.09 4.01 8.93 179.68 1.60 5.62 16 5 S 0.18 5.70 23.37 -56.49 -1.32 4.38 16 6 C -0.24 -7.15 9.64 67.87 0.65 -6.50 16 7 C 0.13 4.61 6.54 41.73 0.27 4.88 16 8 C -0.13 -4.03 5.92 -11.54 -0.07 -4.10 16 9 C -0.16 -4.33 9.90 30.62 0.30 -4.02 16 10 C -0.13 -2.82 9.90 30.62 0.30 -2.52 16 11 N -0.39 -16.42 3.19 -329.19 -1.05 -17.47 16 12 C 0.00 0.21 6.75 40.54 0.27 0.49 16 13 C 0.21 8.49 5.62 85.63 0.48 8.97 16 14 N -0.55 -24.52 2.63 -682.36 -1.79 -26.32 16 15 C -0.27 -13.00 7.65 84.03 0.64 -12.36 16 16 H 0.05 2.46 7.15 -2.91 -0.02 2.44 16 17 C 0.02 0.82 3.15 84.86 0.27 1.09 16 18 N -0.89 -49.44 11.42 21.65 0.25 -49.19 16 19 Si 0.92 41.51 29.47 68.60 2.02 43.53 16 20 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 C 0.14 5.93 6.04 44.99 0.27 6.21 16 24 C -0.17 -7.55 8.29 30.62 0.25 -7.30 16 25 C -0.21 -8.03 10.37 30.62 0.32 -7.71 16 26 H 0.06 2.11 7.61 -2.38 -0.02 2.10 16 27 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.09 2.58 7.14 -2.39 -0.02 2.56 16 29 H 0.22 4.46 7.16 -2.91 -0.02 4.44 16 30 H 0.11 4.16 3.77 -2.38 -0.01 4.15 16 31 H 0.10 2.57 7.48 -2.39 -0.02 2.55 16 32 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.12 1.99 7.53 -2.39 -0.02 1.97 16 35 H 0.09 3.04 7.04 -2.38 -0.02 3.03 16 36 H 0.06 2.11 6.00 -2.38 -0.01 2.09 16 37 H 0.24 13.80 8.32 -92.71 -0.77 13.03 16 38 H 0.09 3.58 6.99 -2.39 -0.02 3.56 16 39 H 0.08 4.04 5.03 -2.39 -0.01 4.03 16 40 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -65.29 348.17 3.62 -61.67 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 1.05 Total: 26.00 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 6.55 Total: -17.85 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -4.69 Total: -117.72 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.02 Total: 43.53 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.32 Total: 4.38 kcal Total: -65.29 3.62 -61.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297298752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.289 kcal (2) G-P(sol) polarization free energy of solvation -65.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds