Wall clock time and date at job start Tue Mar 31 2020 11:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47565 * 2 1 4 4 C 1.50704 * 109.46994 * 120.00401 * 2 1 3 5 5 N 1.30125 * 121.05795 * 299.97367 * 4 2 1 6 6 S 1.69958 * 105.76262 * 179.75841 * 5 4 2 7 7 C 1.72297 * 94.57133 * 0.34294 * 6 5 4 8 8 N 1.38316 * 127.50461 * 179.91237 * 7 6 5 9 9 C 1.46503 * 119.99738 * 359.69015 * 8 7 6 10 10 H 1.09001 * 109.47195 * 324.99889 * 9 8 7 11 11 C 1.52997 * 109.47036 * 204.99444 * 9 8 7 12 12 C 1.50703 * 109.47231 * 65.00289 * 11 9 8 13 13 H 1.08004 * 119.99386 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00123 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00477 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99690 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47605 * 59.99879 * 16 14 12 18 18 H 1.48507 * 109.47031 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47212 * 299.99556 * 16 14 12 20 20 C 1.50706 * 109.47343 * 84.99687 * 9 8 7 21 21 C 1.38234 * 120.00196 * 220.00297 * 20 9 8 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 9 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38243 * 120.00092 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99618 * 359.97438 * 24 23 22 26 26 N 1.31288 * 121.06195 * 119.99832 * 4 2 1 27 27 H 1.08996 * 109.47350 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47003 * 300.00155 * 1 2 3 29 29 H 1.08999 * 109.46983 * 59.99546 * 1 2 3 30 30 H 1.08998 * 109.47003 * 239.99845 * 2 1 3 31 31 H 1.08991 * 109.47410 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47340 * 300.00235 * 3 2 1 33 33 H 1.09009 * 109.46667 * 59.99984 * 3 2 1 34 34 H 0.96996 * 120.00922 * 179.68496 * 8 7 6 35 35 H 1.09003 * 109.47187 * 184.99853 * 11 9 8 36 36 H 1.09000 * 109.47619 * 304.99997 * 11 9 8 37 37 H 0.96993 * 120.00619 * 180.02562 * 15 14 12 38 38 H 1.08000 * 119.99516 * 0.24808 * 21 20 9 39 39 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00350 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00235 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99804 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7310 -0.2836 2.4222 6 16 2.4830 -1.3595 3.5018 7 6 3.1799 -2.3329 2.2626 8 7 3.9734 -3.4549 2.4194 9 6 4.3109 -3.9314 3.7630 10 1 4.4303 -3.0789 4.4316 11 6 5.6182 -4.7245 3.7093 12 6 6.7470 -3.8064 3.3167 13 1 6.5513 -2.7618 3.1243 14 6 8.0294 -4.2999 3.2032 15 7 8.2677 -5.5718 3.4380 16 14 9.4285 -3.1617 2.7173 17 1 9.5509 -2.0720 3.7187 18 1 10.6977 -3.9312 2.6663 19 1 9.1497 -2.5769 1.3811 20 6 3.2054 -4.8193 4.2736 21 6 2.8093 -4.7391 5.5955 22 6 1.7949 -5.5531 6.0637 23 6 1.1763 -6.4470 5.2099 24 6 1.5717 -6.5266 3.8876 25 6 2.5854 -5.7118 3.4191 26 7 2.7882 -1.7796 1.1342 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 4.3064 -3.9263 1.6398 35 1 5.8234 -5.1536 4.6901 36 1 5.5281 -5.5244 2.9744 37 1 9.1699 -5.9189 3.3585 38 1 3.2893 -4.0372 6.2614 39 1 1.4857 -5.4906 7.0966 40 1 0.3840 -7.0834 5.5757 41 1 1.0887 -7.2253 3.2206 42 1 2.8946 -5.7742 2.3862 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301808202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:24 Heat of formation + Delta-G solvation = 59.006942 kcal Electronic energy + Delta-G solvation = -23676.456297 eV Core-core repulsion = 20361.307838 eV Total energy + Delta-G solvation = -3315.148459 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.97933 -39.27309 -36.69202 -34.82198 -33.05309 -31.79715 -30.70632 -30.17111 -28.88074 -27.19138 -25.49443 -24.55077 -22.59259 -22.14845 -21.51773 -20.61043 -19.06086 -18.32265 -16.94745 -16.62990 -16.28661 -15.30578 -15.12608 -14.96378 -14.83245 -14.64510 -14.16835 -13.78409 -13.44197 -13.14423 -12.89637 -12.75993 -12.24781 -12.21426 -12.17934 -11.74923 -11.50569 -11.42605 -11.27916 -11.17733 -10.96979 -10.89373 -10.84698 -10.79954 -10.63257 -10.47324 -9.90046 -9.45156 -9.24691 -9.05106 -8.69405 -8.57133 -8.41354 -7.72947 -6.19723 -4.24847 1.17064 1.41931 1.55956 1.63481 2.19341 3.06698 3.19391 3.24289 3.29082 3.32309 4.03373 4.31672 4.47195 4.91432 5.04075 5.09688 5.11213 5.17422 5.18622 5.30043 5.34174 5.59185 5.60444 5.72879 5.74180 5.77653 5.81212 5.83655 6.00299 6.08263 6.14569 6.19805 6.22813 6.28006 6.31975 6.66279 6.69805 6.74785 6.94352 7.21436 7.29705 7.42770 7.63405 7.75318 8.08369 8.19181 8.79666 9.41677 10.90435 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008567 B = 0.005340 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.484051 B = 5242.298973 C = 7780.436965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 C -0.141 4.141 4 C 0.312 3.688 5 N -0.514 5.514 6 S 0.160 5.840 7 C 0.361 3.639 8 N -0.630 5.630 9 C 0.186 3.814 10 H 0.087 0.913 11 C 0.026 3.974 12 C -0.529 4.529 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.090 4.090 21 C -0.107 4.107 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.101 4.101 26 N -0.599 5.599 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.419 0.581 35 H 0.043 0.957 36 H 0.030 0.970 37 H 0.264 0.736 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 4.005 -1.258 14.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 C -0.199 4.199 4 C 0.021 3.979 5 N -0.348 5.348 6 S 0.294 5.706 7 C -0.018 4.018 8 N -0.265 5.265 9 C 0.081 3.919 10 H 0.104 0.896 11 C -0.011 4.011 12 C -0.567 4.567 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.527 5.527 16 Si 0.720 3.280 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.092 4.092 21 C -0.126 4.126 22 C -0.139 4.139 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.119 4.119 26 N -0.336 5.336 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.258 0.742 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.647 4.452 -0.123 15.309 hybrid contribution 1.383 -0.162 -1.404 1.977 sum -13.264 4.291 -1.527 14.024 Atomic orbital electron populations 1.21797 0.93355 1.02170 1.02473 1.19741 0.96071 0.95342 0.91903 1.21803 1.01362 0.94280 1.02454 1.22963 0.91437 0.89330 0.94127 1.77382 1.29979 1.24881 1.02556 1.84880 1.46958 1.20549 1.18225 1.25239 0.91474 0.92102 0.93027 1.44334 1.47873 1.23758 1.10568 1.20666 0.94471 0.96520 0.80212 0.89555 1.19405 0.87349 0.95061 0.99281 1.21040 0.92194 0.95477 1.47989 0.92420 1.24950 0.98845 0.95034 0.94949 1.69927 1.21484 1.12898 1.48413 0.86638 0.81307 0.80742 0.79293 1.20095 1.21160 1.20140 1.20494 0.96842 0.97613 0.94269 1.21014 0.96948 0.99539 0.95061 1.21054 0.96796 0.96551 0.99466 1.21066 1.00300 0.99222 0.93971 1.21078 0.97772 0.99399 0.95832 1.20934 0.95977 0.95318 0.99698 1.67366 1.24258 1.15130 1.26854 0.92649 0.91718 0.91787 0.88648 0.92504 0.91777 0.91713 0.74205 0.93880 0.95203 0.92608 0.85855 0.86271 0.86578 0.86490 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.11 37.16 0.34 -1.17 16 2 C -0.01 -0.09 3.31 -91.77 -0.30 -0.39 16 3 C -0.14 -1.58 9.11 37.16 0.34 -1.24 16 4 C 0.31 5.16 6.21 -159.04 -0.99 4.17 16 5 N -0.51 -8.84 11.84 29.54 0.35 -8.49 16 6 S 0.16 2.72 22.72 -107.50 -2.44 0.27 16 7 C 0.36 6.47 8.53 -86.35 -0.74 5.73 16 8 N -0.63 -11.17 4.17 -56.19 -0.23 -11.40 16 9 C 0.19 3.37 2.15 -69.08 -0.15 3.22 16 10 H 0.09 1.59 7.30 -51.93 -0.38 1.21 16 11 C 0.03 0.59 4.49 -27.88 -0.13 0.46 16 12 C -0.53 -13.40 8.84 -34.44 -0.30 -13.70 16 13 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -24.71 13.29 55.43 0.74 -23.98 16 16 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.09 -1.48 4.93 -104.62 -0.52 -1.99 16 21 C -0.11 -1.59 9.67 -39.58 -0.38 -1.97 16 22 C -0.12 -1.57 10.05 -39.59 -0.40 -1.97 16 23 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 24 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 16 25 C -0.10 -1.57 9.32 -39.58 -0.37 -1.94 16 26 N -0.60 -10.81 10.60 -14.57 -0.15 -10.96 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.10 1.17 8.13 -51.93 -0.42 0.75 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.77 8.09 -51.92 -0.42 0.35 16 34 H 0.42 7.40 8.73 -40.82 -0.36 7.04 16 35 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.12 1.67 8.04 -52.49 -0.42 1.25 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.80 7.72 -52.48 -0.40 1.39 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -28.68 369.89 -11.85 -40.53 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.17 Total: 6.02 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -4.49 Total: -13.24 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.70 Total: -54.83 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.44 Total: 0.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.68 -11.85 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301808202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.536 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds