Wall clock time and date at job start Tue Mar 31 2020 11:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47565 * 2 1 4 4 C 1.50704 * 109.46994 * 120.00401 * 2 1 3 5 5 N 1.30125 * 121.05795 * 299.97367 * 4 2 1 6 6 S 1.69958 * 105.76262 * 179.75841 * 5 4 2 7 7 C 1.72297 * 94.57133 * 0.34294 * 6 5 4 8 8 N 1.38316 * 127.50461 * 179.91237 * 7 6 5 9 9 C 1.46503 * 119.99738 * 359.69015 * 8 7 6 10 10 H 1.09001 * 109.47195 * 324.99889 * 9 8 7 11 11 C 1.52997 * 109.47036 * 204.99444 * 9 8 7 12 12 C 1.50703 * 109.47231 * 65.00289 * 11 9 8 13 13 H 1.08004 * 119.99386 * 359.97438 * 12 11 9 14 14 C 1.37873 * 120.00123 * 179.97438 * 12 11 9 15 15 N 1.31513 * 120.00477 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99690 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47605 * 59.99879 * 16 14 12 18 18 H 1.48507 * 109.47031 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47212 * 299.99556 * 16 14 12 20 20 C 1.50706 * 109.47343 * 84.99687 * 9 8 7 21 21 C 1.38234 * 120.00196 * 220.00297 * 20 9 8 22 22 C 1.38235 * 119.99814 * 179.97438 * 21 20 9 23 23 C 1.38230 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38243 * 120.00092 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99618 * 359.97438 * 24 23 22 26 26 N 1.31288 * 121.06195 * 119.99832 * 4 2 1 27 27 H 1.08996 * 109.47350 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47003 * 300.00155 * 1 2 3 29 29 H 1.08999 * 109.46983 * 59.99546 * 1 2 3 30 30 H 1.08998 * 109.47003 * 239.99845 * 2 1 3 31 31 H 1.08991 * 109.47410 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47340 * 300.00235 * 3 2 1 33 33 H 1.09009 * 109.46667 * 59.99984 * 3 2 1 34 34 H 0.96996 * 120.00922 * 179.68496 * 8 7 6 35 35 H 1.09003 * 109.47187 * 184.99853 * 11 9 8 36 36 H 1.09000 * 109.47619 * 304.99997 * 11 9 8 37 37 H 0.96993 * 120.00619 * 180.02562 * 15 14 12 38 38 H 1.08000 * 119.99516 * 0.24808 * 21 20 9 39 39 H 1.08000 * 119.99297 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00350 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00235 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.99804 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7310 -0.2836 2.4222 6 16 2.4830 -1.3595 3.5018 7 6 3.1799 -2.3329 2.2626 8 7 3.9734 -3.4549 2.4194 9 6 4.3109 -3.9314 3.7630 10 1 4.4303 -3.0789 4.4316 11 6 5.6182 -4.7245 3.7093 12 6 6.7470 -3.8064 3.3167 13 1 6.5513 -2.7618 3.1243 14 6 8.0294 -4.2999 3.2032 15 7 8.2677 -5.5718 3.4380 16 14 9.4285 -3.1617 2.7173 17 1 9.5509 -2.0720 3.7187 18 1 10.6977 -3.9312 2.6663 19 1 9.1497 -2.5769 1.3811 20 6 3.2054 -4.8193 4.2736 21 6 2.8093 -4.7391 5.5955 22 6 1.7949 -5.5531 6.0637 23 6 1.1763 -6.4470 5.2099 24 6 1.5717 -6.5266 3.8876 25 6 2.5854 -5.7118 3.4191 26 7 2.7882 -1.7796 1.1342 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 4.3064 -3.9263 1.6398 35 1 5.8234 -5.1536 4.6901 36 1 5.5281 -5.5244 2.9744 37 1 9.1699 -5.9189 3.3585 38 1 3.2893 -4.0372 6.2614 39 1 1.4857 -5.4906 7.0966 40 1 0.3840 -7.0834 5.5757 41 1 1.0887 -7.2253 3.2206 42 1 2.8946 -5.7742 2.3862 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301808202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:23 Heat of formation + Delta-G solvation = 45.618548 kcal Electronic energy + Delta-G solvation = -23677.036861 eV Core-core repulsion = 20361.307838 eV Total energy + Delta-G solvation = -3315.729024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29542 -40.47015 -38.01637 -35.98768 -34.88623 -33.17749 -31.81639 -31.42891 -30.54165 -28.05839 -27.04710 -25.93238 -24.01197 -23.42075 -22.76455 -21.91066 -20.26345 -19.66964 -18.66592 -18.02889 -17.66811 -16.77873 -16.49648 -16.28164 -16.08569 -16.02148 -15.21184 -15.01660 -14.69681 -14.38820 -14.21182 -13.88858 -13.73514 -13.51539 -13.32177 -13.13661 -12.99319 -12.75147 -12.69106 -12.59696 -12.42895 -12.20714 -12.08765 -11.98052 -11.85119 -11.78685 -11.63000 -11.30255 -10.63235 -10.62371 -10.43061 -9.78220 -9.60288 -9.11352 -8.24099 -6.34106 -0.19870 0.04006 0.42747 0.54022 0.87492 1.38573 1.39382 1.46882 1.73985 1.82314 2.36861 2.91952 3.10799 3.26439 3.79672 3.93143 3.97026 4.17213 4.17703 4.19791 4.29731 4.32895 4.50291 4.61201 4.67834 4.73016 4.80357 4.82027 4.91526 4.93543 5.08021 5.12482 5.17461 5.24046 5.32239 5.35793 5.38075 5.55141 5.58577 5.63642 5.72472 5.86192 6.09638 6.15064 6.19479 6.77730 6.83012 7.35276 8.86077 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008567 B = 0.005340 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.484051 B = 5242.298973 C = 7780.436965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.011 4.011 3 C -0.135 4.135 4 C 0.306 3.694 5 N -0.524 5.524 6 S 0.167 5.833 7 C 0.352 3.648 8 N -0.631 5.631 9 C 0.203 3.797 10 H 0.081 0.919 11 C 0.038 3.962 12 C -0.533 4.533 13 H 0.054 0.946 14 C 0.017 3.983 15 N -0.922 5.922 16 Si 0.950 3.050 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.110 4.110 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.127 4.127 25 C -0.119 4.119 26 N -0.614 5.614 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.416 0.584 35 H 0.021 0.979 36 H 0.012 0.988 37 H 0.265 0.735 38 H 0.129 0.871 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 4.677 -1.379 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.034 4.034 3 C -0.193 4.193 4 C 0.016 3.984 5 N -0.358 5.358 6 S 0.301 5.699 7 C -0.028 4.028 8 N -0.266 5.266 9 C 0.098 3.902 10 H 0.099 0.901 11 C 0.000 4.000 12 C -0.571 4.571 13 H 0.072 0.928 14 C -0.183 4.183 15 N -0.562 5.562 16 Si 0.775 3.225 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.112 4.112 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.145 4.145 25 C -0.137 4.137 26 N -0.352 5.352 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.255 0.745 35 H 0.040 0.960 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.157 0.843 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.309 5.141 -0.241 17.101 hybrid contribution 1.818 -0.387 -1.357 2.301 sum -14.491 4.754 -1.598 15.334 Atomic orbital electron populations 1.21762 0.91678 1.02043 1.03574 1.20008 0.97390 0.95791 0.90256 1.21778 1.00508 0.93387 1.03610 1.23661 0.90621 0.88875 0.95208 1.77395 1.30428 1.25105 1.02828 1.84784 1.46813 1.20314 1.17982 1.25327 0.91676 0.92086 0.93661 1.44199 1.48169 1.23968 1.10234 1.20251 0.93461 0.96042 0.80402 0.90065 1.19142 0.89078 0.94522 0.97238 1.21350 0.93144 0.95631 1.47011 0.92794 1.25678 1.01199 0.96220 0.95194 1.70031 1.21913 1.14381 1.49839 0.85735 0.78725 0.79078 0.78933 1.19582 1.20795 1.19954 1.20339 0.97217 0.98346 0.95319 1.21225 0.97823 1.00382 0.94496 1.21429 0.95693 0.95601 1.01026 1.21501 1.00381 0.98838 0.93330 1.21391 0.97057 0.99142 0.96940 1.21025 0.97095 0.96129 0.99486 1.67439 1.24788 1.15800 1.27145 0.93383 0.92536 0.88724 0.88114 0.93776 0.88646 0.92506 0.74520 0.96043 0.97002 0.92639 0.85269 0.83309 0.83248 0.84267 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.11 71.98 0.66 -1.94 16 2 C -0.01 -0.26 3.31 -11.54 -0.04 -0.30 16 3 C -0.13 -2.79 9.11 71.98 0.66 -2.13 16 4 C 0.31 9.97 6.21 139.40 0.87 10.83 16 5 N -0.52 -17.77 11.84 -60.44 -0.72 -18.49 16 6 S 0.17 5.68 22.72 -56.49 -1.28 4.40 16 7 C 0.35 12.77 8.53 178.86 1.53 14.30 16 8 N -0.63 -23.07 4.17 -331.69 -1.38 -24.45 16 9 C 0.20 7.61 2.15 44.25 0.10 7.71 16 10 H 0.08 3.09 7.30 -2.39 -0.02 3.07 16 11 C 0.04 1.76 4.49 29.85 0.13 1.89 16 12 C -0.53 -27.68 8.84 25.60 0.23 -27.45 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 14 C 0.02 0.89 5.46 84.65 0.46 1.35 16 15 N -0.92 -52.38 13.29 21.45 0.28 -52.10 16 16 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 20 C -0.11 -3.66 4.93 -19.86 -0.10 -3.76 16 21 C -0.12 -3.51 9.67 22.27 0.22 -3.29 16 22 C -0.12 -2.84 10.05 22.27 0.22 -2.62 16 23 C -0.12 -2.76 10.05 22.27 0.22 -2.54 16 24 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 25 C -0.12 -3.71 9.32 22.27 0.21 -3.50 16 26 N -0.61 -22.20 10.60 -200.02 -2.12 -24.32 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 2.31 8.13 -2.39 -0.02 2.29 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.26 8.09 -2.38 -0.02 1.25 16 34 H 0.42 15.37 8.73 -92.71 -0.81 14.56 16 35 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.13 3.47 8.04 -2.91 -0.02 3.44 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 40 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 41 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.11 3.49 7.72 -2.91 -0.02 3.47 16 Total: -1.00 -62.12 369.89 2.60 -59.52 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.21 Total: 25.07 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 5.58 Total: -14.48 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -3.93 Total: -119.36 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 5.68 SS G_CDS: -1.28 Total: 4.40 kcal Total: -62.12 2.60 -59.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301808202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.141 kcal (2) G-P(sol) polarization free energy of solvation -62.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds