Wall clock time and date at job start Tue Mar 31 2020 12:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 H 1.08998 * 109.46775 * 54.29074 * 3 2 1 5 5 C 1.50694 * 109.47075 * 174.28960 * 3 2 1 6 6 H 1.07999 * 120.00507 * 34.02370 * 5 3 2 7 7 C 1.37875 * 120.00058 * 214.02212 * 5 3 2 8 8 N 1.31521 * 119.99973 * 4.41226 * 7 5 3 9 9 Si 1.86803 * 120.00185 * 184.40900 * 7 5 3 10 10 H 1.48491 * 109.47394 * 270.00213 * 9 7 5 11 11 H 1.48502 * 109.47064 * 30.00514 * 9 7 5 12 12 H 1.48502 * 109.46922 * 149.99725 * 9 7 5 13 13 N 1.46500 * 109.47222 * 294.29133 * 3 2 1 14 14 C 1.38321 * 120.00234 * 84.99897 * 13 3 2 15 15 N 1.32487 * 120.57490 * 6.34058 * 14 13 3 16 16 C 1.32085 * 121.17436 * 179.97438 * 15 14 13 17 17 N 1.31284 * 122.20250 * 359.97417 * 16 15 14 18 18 C 1.34022 * 120.95759 * 0.03615 * 17 16 15 19 19 S 1.75524 * 131.24469 * 180.02562 * 18 17 16 20 20 C 1.75590 * 92.47203 * 180.09811 * 19 18 17 21 21 C 1.33386 * 111.38187 * 359.91464 * 20 19 18 22 22 C 1.39317 * 119.14946 * 359.74817 * 18 17 16 23 23 C 1.52320 * 123.39546 * 180.02562 * 21 20 19 24 24 C 1.52961 * 108.84177 * 342.64825 * 23 21 20 25 25 C 1.53176 * 109.07915 * 50.84769 * 24 23 21 26 26 C 1.51881 * 124.29315 * 179.86525 * 20 19 18 27 27 H 1.08996 * 109.47053 * 60.00130 * 1 2 3 28 28 H 1.09002 * 109.46565 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46971 * 299.99693 * 1 2 3 30 30 H 1.09002 * 109.46860 * 240.00080 * 2 1 3 31 31 H 1.08996 * 109.47119 * 120.00422 * 2 1 3 32 32 H 0.97000 * 119.99920 * 354.57905 * 8 7 5 33 33 H 0.96999 * 120.00077 * 264.99852 * 13 3 2 34 34 H 1.08000 * 118.89550 * 179.97438 * 16 15 14 35 35 H 1.09007 * 109.57488 * 102.45043 * 23 21 20 36 36 H 1.08994 * 109.58204 * 222.83416 * 23 21 20 37 37 H 1.09001 * 109.53941 * 170.72871 * 24 23 21 38 38 H 1.08997 * 109.53473 * 290.96579 * 24 23 21 39 39 H 1.09008 * 109.55658 * 49.46539 * 25 24 23 40 40 H 1.09000 * 109.56088 * 169.78395 * 25 24 23 41 41 H 1.09001 * 109.57606 * 283.24570 * 26 20 19 42 42 H 1.09000 * 109.57997 * 43.63118 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5956 1.9849 0.8344 5 6 3.5403 1.4448 0.1414 6 1 4.1259 0.6536 -0.3030 7 6 4.1656 2.4572 0.8380 8 7 3.4487 3.3728 1.4524 9 14 6.0309 2.5282 0.9092 10 1 6.5110 1.7594 2.0854 11 1 6.5964 1.9397 -0.3313 12 1 6.4681 3.9423 1.0300 13 7 1.6671 2.0923 -1.2589 14 6 0.4193 2.6736 -1.3941 15 7 -0.3997 2.7604 -0.3564 16 6 -1.5936 3.3135 -0.4720 17 7 -2.0306 3.8034 -1.6089 18 6 -1.2737 3.7612 -2.7141 19 16 -1.5793 4.3245 -4.3482 20 6 -0.0081 3.7792 -4.9113 21 6 0.6922 3.2142 -3.9267 22 6 -0.0038 3.1923 -2.6456 23 6 2.0933 2.6463 -4.1132 24 6 2.3474 2.4392 -5.6073 25 6 2.0064 3.7307 -6.3570 26 6 0.4893 3.9306 -6.3384 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.4840 3.3822 1.3510 33 1 2.2953 2.1150 -1.9977 34 1 -2.2316 3.3645 0.3980 35 1 2.8271 3.3451 -3.7114 36 1 2.1727 1.6916 -3.5934 37 1 3.3966 2.1909 -5.7676 38 1 1.7194 1.6277 -5.9748 39 1 2.4915 4.5755 -5.8678 40 1 2.3523 3.6564 -7.3880 41 1 0.0148 3.1813 -6.9720 42 1 0.2476 4.9280 -6.7055 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302173504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:52 Heat of formation + Delta-G solvation = 41.826230 kcal Electronic energy + Delta-G solvation = -24946.113483 eV Core-core repulsion = 21630.220012 eV Total energy + Delta-G solvation = -3315.893471 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.56865 -38.24593 -36.75853 -33.91585 -33.34580 -32.01784 -31.21424 -30.43802 -28.66175 -26.64740 -24.28486 -23.99847 -23.03877 -22.41440 -21.72656 -20.27526 -18.61213 -18.11111 -17.31008 -16.81903 -16.21272 -15.41676 -14.93694 -14.67172 -14.21130 -13.98339 -13.91470 -13.88904 -13.62340 -13.33703 -13.03400 -12.90261 -12.66458 -12.60017 -12.31108 -11.42963 -11.35263 -11.14977 -10.98407 -10.92808 -10.90018 -10.84155 -10.75666 -10.36975 -10.32639 -10.28507 -10.15578 -9.70900 -9.01456 -8.75851 -8.59181 -8.50305 -8.00841 -7.02951 -6.65303 -4.47941 0.96240 1.47051 1.78230 2.13647 2.43866 3.27619 3.30282 3.46878 3.89250 4.30352 4.36379 4.50057 4.71905 4.76089 4.80610 4.95947 5.01440 5.11352 5.30605 5.35841 5.45063 5.54034 5.58086 5.69249 5.75712 5.83420 5.90076 5.92587 5.95396 6.01349 6.12706 6.22424 6.26181 6.55198 6.59296 6.64731 6.73669 6.84244 6.99580 7.18530 7.35339 7.66668 8.09603 8.12934 8.36899 8.57588 8.90653 9.33195 10.71513 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.005404 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.433050 B = 5180.251733 C = 6443.941650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C 0.234 3.766 4 H 0.071 0.929 5 C -0.611 4.611 6 H 0.057 0.943 7 C 0.034 3.966 8 N -0.885 5.885 9 Si 1.070 2.930 10 H -0.284 1.284 11 H -0.286 1.286 12 H -0.283 1.283 13 N -0.665 5.665 14 C 0.486 3.514 15 N -0.579 5.579 16 C 0.354 3.646 17 N -0.563 5.563 18 C 0.127 3.873 19 S 0.121 5.879 20 C -0.203 4.203 21 C -0.042 4.042 22 C -0.250 4.250 23 C -0.072 4.072 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.039 4.039 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.279 0.721 33 H 0.397 0.603 34 H 0.192 0.808 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -0.547 -13.395 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C 0.135 3.865 4 H 0.089 0.911 5 C -0.649 4.649 6 H 0.075 0.925 7 C -0.176 4.176 8 N -0.518 5.518 9 Si 0.897 3.103 10 H -0.210 1.210 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.293 5.293 14 C 0.232 3.768 15 N -0.307 5.307 16 C 0.060 3.940 17 N -0.287 5.287 18 C -0.122 4.122 19 S 0.381 5.619 20 C -0.319 4.319 21 C -0.054 4.054 22 C -0.269 4.269 23 C -0.112 4.112 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.078 4.078 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.238 0.762 34 H 0.208 0.792 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.062 0.933 -12.466 13.487 hybrid contribution 0.407 -1.498 -0.767 1.731 sum -4.656 -0.565 -13.233 14.039 Atomic orbital electron populations 1.21831 0.97296 0.98806 1.01781 1.21833 0.94028 0.99070 1.00603 1.19195 0.95346 0.88856 0.83144 0.91095 1.22103 0.90900 1.12139 1.39773 0.92505 1.26036 1.07298 0.92382 0.91861 1.70741 1.09450 1.34561 1.37060 0.83534 0.73665 0.76569 0.76507 1.20986 1.21142 1.20828 1.47524 1.09495 1.53153 1.19159 1.18947 0.87503 0.84304 0.86096 1.68067 1.06401 1.25936 1.30341 1.24521 0.89340 0.86386 0.93732 1.68054 1.36086 1.26241 0.98360 1.23177 0.92507 0.97774 0.98695 1.83712 1.16003 1.63925 0.98212 1.24091 0.98296 1.09736 0.99770 1.20058 0.96388 0.98901 0.90048 1.20060 0.97793 1.13757 0.95269 1.20791 0.91982 1.01077 0.97330 1.21533 1.01765 0.97851 0.94255 1.21572 0.94789 0.98524 1.00586 1.20281 0.95849 1.02061 0.89638 0.94096 0.95098 0.92299 0.93933 0.91913 0.90799 0.76171 0.79165 0.89681 0.90035 0.91011 0.91542 0.91304 0.91129 0.90531 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.56 37.16 0.32 -2.33 16 2 C -0.12 -2.40 5.59 -26.73 -0.15 -2.55 16 3 C 0.23 5.44 2.23 -69.09 -0.15 5.28 16 4 H 0.07 1.85 5.57 -51.93 -0.29 1.56 16 5 C -0.61 -15.40 8.50 -34.44 -0.29 -15.69 16 6 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 7 C 0.03 0.90 5.46 -17.82 -0.10 0.80 16 8 N -0.88 -25.12 13.63 55.43 0.76 -24.36 16 9 Si 1.07 23.16 29.91 -169.99 -5.08 18.07 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.66 -14.11 5.06 -54.44 -0.28 -14.39 16 14 C 0.49 10.10 5.91 -154.53 -0.91 9.19 16 15 N -0.58 -11.91 7.13 -13.42 -0.10 -12.00 16 16 C 0.35 6.48 12.26 -92.34 -1.13 5.35 16 17 N -0.56 -10.66 10.48 -13.46 -0.14 -10.80 16 18 C 0.13 2.39 7.67 -16.19 -0.12 2.26 16 19 S 0.12 1.82 23.18 -107.50 -2.49 -0.67 16 20 C -0.20 -2.89 6.29 -35.42 -0.22 -3.12 16 21 C -0.04 -0.68 5.93 -102.49 -0.61 -1.28 16 22 C -0.25 -4.79 6.05 -105.06 -0.64 -5.43 16 23 C -0.07 -1.02 4.55 -27.10 -0.12 -1.15 16 24 C -0.12 -1.26 5.91 -26.66 -0.16 -1.42 16 25 C -0.12 -1.13 5.94 -26.62 -0.16 -1.28 16 26 C -0.04 -0.41 6.24 -27.28 -0.17 -0.58 16 27 H 0.04 0.81 5.72 -51.93 -0.30 0.51 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.14 7.85 -51.93 -0.41 0.73 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.28 8.10 6.48 -40.82 -0.26 7.83 16 33 H 0.40 7.96 4.75 -40.82 -0.19 7.76 16 34 H 0.19 2.75 8.06 -52.49 -0.42 2.32 16 35 H 0.08 1.24 8.09 -51.92 -0.42 0.82 16 36 H 0.08 1.22 6.43 -51.93 -0.33 0.88 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.07 0.71 8.10 -51.92 -0.42 0.29 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -28.96 341.74 -12.44 -41.39 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.64 Total: 9.56 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.62 Total: -11.95 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.24 Total: -61.56 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.08 Total: 18.07 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.49 Total: -0.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.96 -12.44 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302173504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.221 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds