Wall clock time and date at job start Tue Mar 31 2020 12:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47116 * 2 1 4 4 H 1.08998 * 109.46775 * 54.29074 * 3 2 1 5 5 C 1.50694 * 109.47075 * 174.28960 * 3 2 1 6 6 H 1.07999 * 120.00507 * 34.02370 * 5 3 2 7 7 C 1.37875 * 120.00058 * 214.02212 * 5 3 2 8 8 N 1.31521 * 119.99973 * 4.41226 * 7 5 3 9 9 Si 1.86803 * 120.00185 * 184.40900 * 7 5 3 10 10 H 1.48491 * 109.47394 * 270.00213 * 9 7 5 11 11 H 1.48502 * 109.47064 * 30.00514 * 9 7 5 12 12 H 1.48502 * 109.46922 * 149.99725 * 9 7 5 13 13 N 1.46500 * 109.47222 * 294.29133 * 3 2 1 14 14 C 1.38321 * 120.00234 * 84.99897 * 13 3 2 15 15 N 1.32487 * 120.57490 * 6.34058 * 14 13 3 16 16 C 1.32085 * 121.17436 * 179.97438 * 15 14 13 17 17 N 1.31284 * 122.20250 * 359.97417 * 16 15 14 18 18 C 1.34022 * 120.95759 * 0.03615 * 17 16 15 19 19 S 1.75524 * 131.24469 * 180.02562 * 18 17 16 20 20 C 1.75590 * 92.47203 * 180.09811 * 19 18 17 21 21 C 1.33386 * 111.38187 * 359.91464 * 20 19 18 22 22 C 1.39317 * 119.14946 * 359.74817 * 18 17 16 23 23 C 1.52320 * 123.39546 * 180.02562 * 21 20 19 24 24 C 1.52961 * 108.84177 * 342.64825 * 23 21 20 25 25 C 1.53176 * 109.07915 * 50.84769 * 24 23 21 26 26 C 1.51881 * 124.29315 * 179.86525 * 20 19 18 27 27 H 1.08996 * 109.47053 * 60.00130 * 1 2 3 28 28 H 1.09002 * 109.46565 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46971 * 299.99693 * 1 2 3 30 30 H 1.09002 * 109.46860 * 240.00080 * 2 1 3 31 31 H 1.08996 * 109.47119 * 120.00422 * 2 1 3 32 32 H 0.97000 * 119.99920 * 354.57905 * 8 7 5 33 33 H 0.96999 * 120.00077 * 264.99852 * 13 3 2 34 34 H 1.08000 * 118.89550 * 179.97438 * 16 15 14 35 35 H 1.09007 * 109.57488 * 102.45043 * 23 21 20 36 36 H 1.08994 * 109.58204 * 222.83416 * 23 21 20 37 37 H 1.09001 * 109.53941 * 170.72871 * 24 23 21 38 38 H 1.08997 * 109.53473 * 290.96579 * 24 23 21 39 39 H 1.09008 * 109.55658 * 49.46539 * 25 24 23 40 40 H 1.09000 * 109.56088 * 169.78395 * 25 24 23 41 41 H 1.09001 * 109.57606 * 283.24570 * 26 20 19 42 42 H 1.09000 * 109.57997 * 43.63118 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5956 1.9849 0.8344 5 6 3.5403 1.4448 0.1414 6 1 4.1259 0.6536 -0.3030 7 6 4.1656 2.4572 0.8380 8 7 3.4487 3.3728 1.4524 9 14 6.0309 2.5282 0.9092 10 1 6.5110 1.7594 2.0854 11 1 6.5964 1.9397 -0.3313 12 1 6.4681 3.9423 1.0300 13 7 1.6671 2.0923 -1.2589 14 6 0.4193 2.6736 -1.3941 15 7 -0.3997 2.7604 -0.3564 16 6 -1.5936 3.3135 -0.4720 17 7 -2.0306 3.8034 -1.6089 18 6 -1.2737 3.7612 -2.7141 19 16 -1.5793 4.3245 -4.3482 20 6 -0.0081 3.7792 -4.9113 21 6 0.6922 3.2142 -3.9267 22 6 -0.0038 3.1923 -2.6456 23 6 2.0933 2.6463 -4.1132 24 6 2.3474 2.4392 -5.6073 25 6 2.0064 3.7307 -6.3570 26 6 0.4893 3.9306 -6.3384 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.4840 3.3822 1.3510 33 1 2.2953 2.1150 -1.9977 34 1 -2.2316 3.3645 0.3980 35 1 2.8271 3.3451 -3.7114 36 1 2.1727 1.6916 -3.5934 37 1 3.3966 2.1909 -5.7676 38 1 1.7194 1.6277 -5.9748 39 1 2.4915 4.5755 -5.8678 40 1 2.3523 3.6564 -7.3880 41 1 0.0148 3.1813 -6.9720 42 1 0.2476 4.9280 -6.7055 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302173504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:51 Heat of formation + Delta-G solvation = 28.184704 kcal Electronic energy + Delta-G solvation = -24946.705024 eV Core-core repulsion = 21630.220012 eV Total energy + Delta-G solvation = -3316.485012 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00439 -39.33498 -38.44474 -35.15125 -35.06126 -33.77281 -32.56193 -31.59460 -29.97689 -28.39087 -25.78949 -25.27111 -24.70244 -23.72690 -22.79209 -21.96162 -19.84846 -19.57032 -19.00219 -18.21016 -17.58383 -16.76201 -16.46534 -16.05631 -15.67812 -15.63649 -15.20567 -15.08416 -14.82192 -14.76477 -14.64286 -14.24825 -13.93423 -13.72577 -13.52821 -12.98672 -12.84600 -12.62782 -12.52773 -12.45179 -12.25674 -12.07707 -11.96019 -11.90611 -11.75573 -11.51968 -11.30757 -11.26010 -10.94247 -10.54922 -10.12290 -10.02242 -9.34089 -8.72434 -8.50423 -6.54541 -0.40164 0.18355 0.26844 0.88338 1.13634 1.53064 1.58460 1.77408 2.29387 2.51933 2.87358 3.17922 3.35820 3.41453 3.58886 3.79739 3.89706 3.96760 4.11564 4.24331 4.26200 4.27880 4.30471 4.47578 4.51588 4.56406 4.69477 4.85729 4.87945 4.95696 5.00763 5.05540 5.11716 5.15017 5.16048 5.27476 5.37355 5.41925 5.46337 5.50158 5.69746 5.90563 6.09359 6.38483 6.50197 6.76281 7.34468 7.39064 8.63638 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.005404 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.433050 B = 5180.251733 C = 6443.941650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.241 3.759 4 H 0.037 0.963 5 C -0.615 4.615 6 H 0.059 0.941 7 C -0.013 4.013 8 N -0.920 5.920 9 Si 1.115 2.885 10 H -0.273 1.273 11 H -0.262 1.262 12 H -0.289 1.289 13 N -0.672 5.672 14 C 0.470 3.530 15 N -0.601 5.601 16 C 0.342 3.658 17 N -0.566 5.566 18 C 0.090 3.910 19 S 0.167 5.833 20 C -0.184 4.184 21 C -0.073 4.073 22 C -0.261 4.261 23 C -0.070 4.070 24 C -0.112 4.112 25 C -0.112 4.112 26 C -0.041 4.041 27 H 0.028 0.972 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.262 0.738 33 H 0.402 0.598 34 H 0.222 0.778 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 -0.800 -16.477 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.140 3.860 4 H 0.055 0.945 5 C -0.653 4.653 6 H 0.077 0.923 7 C -0.215 4.215 8 N -0.555 5.555 9 Si 0.936 3.064 10 H -0.198 1.198 11 H -0.187 1.187 12 H -0.215 1.215 13 N -0.302 5.302 14 C 0.216 3.784 15 N -0.329 5.329 16 C 0.049 3.951 17 N -0.290 5.290 18 C -0.158 4.158 19 S 0.428 5.572 20 C -0.300 4.300 21 C -0.085 4.085 22 C -0.279 4.279 23 C -0.109 4.109 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.080 4.080 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.238 0.762 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.888 0.676 -15.580 16.343 hybrid contribution 0.190 -1.388 0.058 1.402 sum -4.698 -0.712 -15.522 16.233 Atomic orbital electron populations 1.21659 0.95888 0.99959 1.00720 1.21751 0.95228 0.97428 1.00650 1.18925 0.94282 0.89853 0.82937 0.94511 1.22376 0.92075 1.11759 1.39087 0.92278 1.27368 1.10923 0.91921 0.91323 1.70872 1.08488 1.36464 1.39683 0.82975 0.69168 0.76374 0.77849 1.19819 1.18683 1.21549 1.46890 1.10295 1.54500 1.18520 1.19071 0.87319 0.84821 0.87164 1.68059 1.07274 1.26688 1.30918 1.25129 0.89121 0.86081 0.94771 1.68131 1.36193 1.25983 0.98697 1.23802 0.92845 0.98743 1.00382 1.83523 1.16072 1.62598 0.95037 1.24766 0.97306 1.06631 1.01291 1.20230 0.97727 1.01172 0.89336 1.20371 0.98475 1.13246 0.95839 1.20772 0.90600 0.99710 0.99852 1.21550 1.02925 0.98860 0.91597 1.21598 0.94043 0.97353 1.02119 1.20557 0.96498 1.03970 0.87004 0.95245 0.92656 0.93240 0.93244 0.92262 0.92682 0.75643 0.76196 0.90983 0.91574 0.89499 0.90944 0.92105 0.87925 0.88291 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 8.56 71.98 0.62 -4.16 16 2 C -0.11 -4.69 5.59 30.60 0.17 -4.52 16 3 C 0.24 11.64 2.23 44.24 0.10 11.74 16 4 H 0.04 2.04 5.57 -2.39 -0.01 2.03 16 5 C -0.61 -31.71 8.50 25.60 0.22 -31.50 16 6 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 7 C -0.01 -0.68 5.46 84.65 0.46 -0.22 16 8 N -0.92 -54.37 13.63 21.45 0.29 -54.08 16 9 Si 1.12 46.89 29.91 68.60 2.05 48.94 16 10 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 11 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 12 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 13 N -0.67 -29.70 5.06 -326.15 -1.65 -31.35 16 14 C 0.47 20.29 5.91 133.97 0.79 21.08 16 15 N -0.60 -25.76 7.13 -196.36 -1.40 -27.16 16 16 C 0.34 12.83 12.26 180.95 2.22 15.05 16 17 N -0.57 -21.58 10.48 -196.49 -2.06 -23.64 16 18 C 0.09 3.38 7.67 84.62 0.65 4.03 16 19 S 0.17 4.69 23.18 -56.49 -1.31 3.38 16 20 C -0.18 -4.81 6.29 24.97 0.16 -4.65 16 21 C -0.07 -2.32 5.93 -18.48 -0.11 -2.43 16 22 C -0.26 -10.14 6.05 -20.15 -0.12 -10.26 16 23 C -0.07 -1.94 4.55 30.36 0.14 -1.81 16 24 C -0.11 -2.13 5.91 30.64 0.18 -1.95 16 25 C -0.11 -1.75 5.94 30.66 0.18 -1.57 16 26 C -0.04 -0.69 6.24 30.24 0.19 -0.50 16 27 H 0.03 1.18 5.72 -2.39 -0.01 1.16 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.96 7.85 -2.39 -0.02 1.94 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.26 16.10 6.48 -92.71 -0.60 15.50 16 33 H 0.40 16.76 4.75 -92.71 -0.44 16.32 16 34 H 0.22 6.45 8.06 -2.91 -0.02 6.42 16 35 H 0.07 2.14 8.09 -2.38 -0.02 2.12 16 36 H 0.07 2.01 6.43 -2.39 -0.02 2.00 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 39 H 0.06 1.07 8.10 -2.38 -0.02 1.06 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -65.28 341.74 2.54 -62.74 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.78 Total: 32.84 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.84 Total: -11.68 kcal Atomic # 7 Polarization: -131.41 SS G_CDS: -4.82 Total: -136.22 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.05 Total: 48.94 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.31 Total: 3.38 kcal Total: -65.28 2.54 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302173504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.921 kcal (2) G-P(sol) polarization free energy of solvation -65.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds