Wall clock time and date at job start Tue Mar 31 2020 11:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29021 * 124.91687 * 2 1 4 4 C 1.31777 * 117.12686 * 180.02562 * 3 2 1 5 5 C 1.50704 * 122.75277 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47259 * 90.02429 * 5 4 3 7 7 C 1.46898 * 110.99720 * 66.04641 * 6 5 4 8 8 C 1.50699 * 109.47155 * 193.95501 * 7 6 5 9 9 H 1.08004 * 119.99782 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00305 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99866 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99965 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47160 * 89.99975 * 12 10 8 14 14 H 1.48496 * 109.46807 * 209.99838 * 12 10 8 15 15 H 1.48504 * 109.47033 * 329.99696 * 12 10 8 16 16 C 1.46898 * 110.99845 * 190.00318 * 6 5 4 17 17 C 1.50707 * 109.46592 * 170.00327 * 16 6 5 18 18 C 1.38227 * 119.62024 * 94.97729 * 17 16 6 19 19 C 1.38627 * 119.15702 * 179.78495 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61172 * 274.99481 * 17 16 6 23 23 C 1.33641 * 114.50193 * 0.23580 * 4 3 2 24 24 C 1.50698 * 126.04165 * 179.76908 * 23 4 3 25 25 S 1.70977 * 124.91537 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47407 * 90.00316 * 1 2 3 27 27 H 1.09005 * 109.47357 * 210.00224 * 1 2 3 28 28 H 1.09000 * 109.47068 * 329.99939 * 1 2 3 29 29 H 1.09005 * 109.47002 * 330.02471 * 5 4 3 30 30 H 1.08999 * 109.47250 * 210.03003 * 5 4 3 31 31 H 1.09002 * 109.47442 * 313.95778 * 7 6 5 32 32 H 1.08997 * 109.47281 * 73.95810 * 7 6 5 33 33 H 0.96999 * 120.00005 * 179.97438 * 11 10 8 34 34 H 1.08993 * 109.47549 * 49.99892 * 16 6 5 35 35 H 1.08997 * 109.47171 * 289.99469 * 16 6 5 36 36 H 1.07998 * 120.41916 * 359.97438 * 18 17 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 38 38 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 39 39 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 40 40 H 1.09006 * 109.46780 * 89.99609 * 24 23 4 41 41 H 1.09000 * 109.47204 * 209.99274 * 24 23 4 42 42 H 1.09001 * 109.46956 * 329.99703 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 -0.0005 5 6 4.5307 2.0246 -0.0012 6 7 4.8500 2.3966 1.3836 7 6 5.5758 1.3163 2.0649 8 6 5.5861 1.5761 3.5492 9 1 5.1015 2.4557 3.9468 10 6 6.2141 0.6911 4.3998 11 7 6.8037 -0.3801 3.9157 12 14 6.2261 1.0129 6.2398 13 1 5.0354 0.3794 6.8609 14 1 7.4594 0.4383 6.8347 15 1 6.1932 2.4770 6.4865 16 6 5.6108 3.6524 1.4292 17 6 5.7077 4.1293 2.8555 18 6 6.8214 3.8087 3.6090 19 6 6.9026 4.2562 4.9185 20 6 5.8515 5.0043 5.4267 21 6 4.7704 5.2860 4.6135 22 7 4.7290 4.8474 3.3703 23 6 3.9354 -0.4006 -0.0060 24 6 5.3574 -0.8994 -0.0128 25 16 2.4856 -1.4020 0.0006 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 4.0901 2.8793 -0.5146 30 1 5.4428 1.7223 -0.5158 31 1 5.0821 0.3650 1.8659 32 1 6.6006 1.2779 1.6957 33 1 7.2458 -1.0026 4.5140 34 1 5.1036 4.4065 0.8276 35 1 6.6124 3.4850 1.0333 36 1 7.6194 3.2196 3.1818 37 1 7.7624 4.0241 5.5297 38 1 5.8795 5.3663 6.4439 39 1 3.9496 5.8715 5.0005 40 1 5.7040 -1.0228 1.0133 41 1 5.4038 -1.8579 -0.5297 42 1 5.9929 -0.1782 -0.5267 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336822325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:40 Heat of formation + Delta-G solvation = 97.401602 kcal Electronic energy + Delta-G solvation = -24853.853958 eV Core-core repulsion = 21540.370416 eV Total energy + Delta-G solvation = -3313.483542 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82458 -39.38694 -36.47861 -33.19267 -32.68351 -31.57024 -30.81839 -30.08926 -27.95884 -27.03290 -24.83638 -23.84814 -22.63624 -22.48119 -21.57145 -20.15062 -18.34230 -17.38087 -16.66720 -16.10111 -15.57899 -15.17649 -14.97537 -14.63919 -14.38315 -14.05666 -13.69509 -13.35307 -13.11265 -13.00869 -12.70013 -12.58340 -12.47373 -12.20730 -12.05737 -11.94332 -11.87865 -11.66425 -11.30076 -11.07234 -10.89695 -10.66501 -10.59019 -10.37754 -9.82886 -9.29785 -9.17802 -8.82158 -8.76731 -8.61248 -8.52620 -8.14513 -7.77690 -7.28232 -6.10823 -4.00936 1.13845 1.73201 1.96107 2.12653 2.19370 3.23032 3.26451 3.34689 3.40876 4.38324 4.42844 4.57445 5.09044 5.20737 5.25902 5.28565 5.42249 5.50367 5.51491 5.54678 5.55995 5.59439 5.82589 5.83183 5.94772 5.97063 5.97456 6.10430 6.13467 6.21878 6.35811 6.46527 6.48610 6.57720 6.69913 6.94790 7.03259 7.18714 7.23576 7.54445 7.77844 8.03386 8.12178 8.25270 8.48302 8.89471 8.99087 9.54551 10.99158 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.005088 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.468086 B = 5501.375250 C = 6274.916397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.032 3.968 3 N -0.448 5.448 4 C 0.079 3.921 5 C 0.132 3.868 6 N -0.522 5.522 7 C 0.177 3.823 8 C -0.491 4.491 9 H 0.073 0.927 10 C 0.061 3.939 11 N -0.894 5.894 12 Si 0.871 3.129 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.252 1.252 16 C 0.119 3.881 17 C 0.162 3.838 18 C -0.085 4.085 19 C -0.101 4.101 20 C -0.177 4.177 21 C 0.067 3.933 22 N -0.475 5.475 23 C -0.194 4.194 24 C -0.083 4.083 25 S 0.085 5.915 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.048 0.952 32 H -0.008 1.008 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 1.856 -6.899 8.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.246 4.246 3 N -0.163 5.163 4 C -0.052 4.052 5 C 0.002 3.998 6 N -0.247 5.247 7 C 0.052 3.948 8 C -0.529 4.529 9 H 0.091 0.909 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.698 3.302 13 H -0.211 1.211 14 H -0.215 1.215 15 H -0.175 1.175 16 C -0.010 4.010 17 C 0.021 3.979 18 C -0.106 4.106 19 C -0.127 4.127 20 C -0.197 4.197 21 C -0.088 4.088 22 N -0.185 5.185 23 C -0.315 4.315 24 C -0.142 4.142 25 S 0.340 5.660 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.145 0.855 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.156 0.844 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.256 1.432 -7.102 8.951 hybrid contribution 2.026 0.037 1.600 2.582 sum -3.230 1.470 -5.502 6.547 Atomic orbital electron populations 1.20336 0.85756 1.03864 1.03125 1.26728 1.01247 0.90833 1.05827 1.65996 1.04673 1.31228 1.14364 1.19848 0.89789 0.93402 1.02129 1.20422 0.93836 0.93910 0.91663 1.62039 1.46794 1.04031 1.11845 1.20174 0.90960 0.89816 0.93809 1.21529 1.32211 1.08016 0.91145 0.90882 1.24845 0.95850 0.94971 0.98410 1.69920 1.36336 1.12104 1.35002 0.86907 0.77246 0.79979 0.86038 1.21084 1.21550 1.17545 1.20699 0.96066 0.92539 0.91681 1.20599 0.88959 0.92309 0.96007 1.21651 0.99281 0.95196 0.94447 1.21195 0.98686 0.97402 0.95413 1.21820 0.96070 1.01566 1.00227 1.22303 0.97081 0.99327 0.90137 1.67339 1.26970 1.10701 1.13504 1.25664 0.99956 0.95377 1.10528 1.20540 0.88404 1.00208 1.05022 1.83652 0.98644 1.13392 1.70344 0.90238 0.90604 0.89519 0.90306 0.94104 0.93406 0.99066 0.93036 0.90799 0.94382 0.85523 0.86543 0.86623 0.84358 0.87674 0.92151 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.46 36.01 0.38 -0.45 16 2 C 0.03 0.52 7.39 -13.46 -0.10 0.43 16 3 N -0.45 -8.64 10.53 -8.06 -0.08 -8.73 16 4 C 0.08 1.54 5.76 -84.22 -0.48 1.05 16 5 C 0.13 2.47 5.20 -4.97 -0.03 2.45 16 6 N -0.52 -11.26 4.55 -238.96 -1.09 -12.35 16 7 C 0.18 4.27 3.74 -4.98 -0.02 4.25 16 8 C -0.49 -12.89 5.77 -34.44 -0.20 -13.09 16 9 H 0.07 1.99 4.93 -52.48 -0.26 1.74 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.89 -24.70 13.29 55.43 0.74 -23.97 16 12 Si 0.87 20.87 28.79 -169.99 -4.89 15.98 16 13 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.25 -5.68 5.26 56.52 0.30 -5.38 16 16 C 0.12 2.31 5.28 -4.97 -0.03 2.28 16 17 C 0.16 3.36 4.01 -82.58 -0.33 3.03 16 18 C -0.09 -1.73 6.30 -39.44 -0.25 -1.97 16 19 C -0.10 -1.92 7.80 -39.28 -0.31 -2.22 16 20 C -0.18 -3.16 9.87 -39.44 -0.39 -3.55 16 21 C 0.07 1.25 11.18 -17.55 -0.20 1.05 16 22 N -0.48 -10.00 10.16 -9.47 -0.10 -10.10 16 23 C -0.19 -3.51 5.58 -35.92 -0.20 -3.71 16 24 C -0.08 -1.40 8.90 36.00 0.32 -1.08 16 25 S 0.09 1.34 23.18 -107.50 -2.49 -1.15 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.38 7.93 -51.93 -0.41 0.97 16 30 H 0.04 0.70 6.69 -51.93 -0.35 0.35 16 31 H 0.05 1.22 3.76 -51.93 -0.20 1.03 16 32 H -0.01 -0.21 7.99 -51.93 -0.41 -0.62 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 35 H 0.04 0.69 7.91 -51.93 -0.41 0.27 16 36 H 0.13 2.58 7.98 -52.49 -0.42 2.16 16 37 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 38 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.14 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.11 2.13 6.48 -51.93 -0.34 1.79 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.17 6.76 -51.93 -0.35 0.82 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -30.94 346.07 -10.38 -41.33 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.76 Total: 3.79 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -1.93 Total: -10.01 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.53 Total: -55.14 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.89 Total: 15.98 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.49 Total: -1.15 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.94 -10.38 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336822325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.727 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds