Wall clock time and date at job start Tue Mar 31 2020 11:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29021 * 124.91687 * 2 1 4 4 C 1.31777 * 117.12686 * 180.02562 * 3 2 1 5 5 C 1.50704 * 122.75277 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47259 * 90.02429 * 5 4 3 7 7 C 1.46898 * 110.99720 * 66.04641 * 6 5 4 8 8 C 1.50699 * 109.47155 * 193.95501 * 7 6 5 9 9 H 1.08004 * 119.99782 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00305 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99866 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99965 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47160 * 89.99975 * 12 10 8 14 14 H 1.48496 * 109.46807 * 209.99838 * 12 10 8 15 15 H 1.48504 * 109.47033 * 329.99696 * 12 10 8 16 16 C 1.46898 * 110.99845 * 190.00318 * 6 5 4 17 17 C 1.50707 * 109.46592 * 170.00327 * 16 6 5 18 18 C 1.38227 * 119.62024 * 94.97729 * 17 16 6 19 19 C 1.38627 * 119.15702 * 179.78495 * 18 17 16 20 20 C 1.38669 * 118.42389 * 0.47826 * 19 18 17 21 21 C 1.38186 * 119.16143 * 359.49762 * 20 19 18 22 22 N 1.31856 * 119.61172 * 274.99481 * 17 16 6 23 23 C 1.33641 * 114.50193 * 0.23580 * 4 3 2 24 24 C 1.50698 * 126.04165 * 179.76908 * 23 4 3 25 25 S 1.70977 * 124.91537 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47407 * 90.00316 * 1 2 3 27 27 H 1.09005 * 109.47357 * 210.00224 * 1 2 3 28 28 H 1.09000 * 109.47068 * 329.99939 * 1 2 3 29 29 H 1.09005 * 109.47002 * 330.02471 * 5 4 3 30 30 H 1.08999 * 109.47250 * 210.03003 * 5 4 3 31 31 H 1.09002 * 109.47442 * 313.95778 * 7 6 5 32 32 H 1.08997 * 109.47281 * 73.95810 * 7 6 5 33 33 H 0.96999 * 120.00005 * 179.97438 * 11 10 8 34 34 H 1.08993 * 109.47549 * 49.99892 * 16 6 5 35 35 H 1.08997 * 109.47171 * 289.99469 * 16 6 5 36 36 H 1.07998 * 120.41916 * 359.97438 * 18 17 16 37 37 H 1.08008 * 120.78688 * 180.22921 * 19 18 17 38 38 H 1.08002 * 120.42244 * 179.78279 * 20 19 18 39 39 H 1.07996 * 119.61757 * 180.25243 * 21 20 19 40 40 H 1.09006 * 109.46780 * 89.99609 * 24 23 4 41 41 H 1.09000 * 109.47204 * 209.99274 * 24 23 4 42 42 H 1.09001 * 109.46956 * 329.99703 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 -0.0005 5 6 4.5307 2.0246 -0.0012 6 7 4.8500 2.3966 1.3836 7 6 5.5758 1.3163 2.0649 8 6 5.5861 1.5761 3.5492 9 1 5.1015 2.4557 3.9468 10 6 6.2141 0.6911 4.3998 11 7 6.8037 -0.3801 3.9157 12 14 6.2261 1.0129 6.2398 13 1 5.0354 0.3794 6.8609 14 1 7.4594 0.4383 6.8347 15 1 6.1932 2.4770 6.4865 16 6 5.6108 3.6524 1.4292 17 6 5.7077 4.1293 2.8555 18 6 6.8214 3.8087 3.6090 19 6 6.9026 4.2562 4.9185 20 6 5.8515 5.0043 5.4267 21 6 4.7704 5.2860 4.6135 22 7 4.7290 4.8474 3.3703 23 6 3.9354 -0.4006 -0.0060 24 6 5.3574 -0.8994 -0.0128 25 16 2.4856 -1.4020 0.0006 26 1 -0.3634 -0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 4.0901 2.8793 -0.5146 30 1 5.4428 1.7223 -0.5158 31 1 5.0821 0.3650 1.8659 32 1 6.6006 1.2779 1.6957 33 1 7.2458 -1.0026 4.5140 34 1 5.1036 4.4065 0.8276 35 1 6.6124 3.4850 1.0333 36 1 7.6194 3.2196 3.1818 37 1 7.7624 4.0241 5.5297 38 1 5.8795 5.3663 6.4439 39 1 3.9496 5.8715 5.0005 40 1 5.7040 -1.0228 1.0133 41 1 5.4038 -1.8579 -0.5297 42 1 5.9929 -0.1782 -0.5267 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336822325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:39 Heat of formation + Delta-G solvation = 77.508785 kcal Electronic energy + Delta-G solvation = -24854.716575 eV Core-core repulsion = 21540.370416 eV Total energy + Delta-G solvation = -3314.346159 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28749 -40.81484 -38.06123 -34.74128 -34.41508 -33.10262 -32.30233 -31.29673 -29.68058 -28.56809 -26.31873 -25.43147 -24.16691 -24.02840 -22.98781 -21.75322 -19.69103 -18.79983 -18.54684 -17.56074 -17.14881 -16.68188 -16.53633 -16.34184 -15.82431 -15.45984 -15.26990 -14.78923 -14.52786 -14.24403 -14.15749 -14.03094 -13.96105 -13.82291 -13.53138 -13.47282 -13.11874 -12.98715 -12.91713 -12.69304 -12.56379 -12.35947 -12.18667 -11.92001 -11.62655 -11.20628 -10.55594 -10.50474 -10.36194 -10.11348 -10.07041 -9.51303 -9.35377 -8.95274 -8.12886 -6.07960 -0.17815 0.45427 0.48151 0.67959 0.81075 1.34623 1.41052 1.49877 1.84481 2.43484 3.02063 3.23198 3.25509 3.61432 3.66385 3.98593 4.06416 4.14121 4.17552 4.19471 4.38678 4.41726 4.48134 4.52712 4.59581 4.65818 4.70907 4.72118 4.74444 4.97952 4.99080 5.00509 5.09686 5.13624 5.26682 5.35329 5.39981 5.47257 5.56184 5.75688 6.06427 6.16143 6.38835 6.64605 6.92214 6.96597 7.38223 7.50741 8.96497 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.014035 B = 0.005088 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.468086 B = 5501.375250 C = 6274.916397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.031 3.969 3 N -0.485 5.485 4 C 0.061 3.939 5 C 0.133 3.867 6 N -0.536 5.536 7 C 0.197 3.803 8 C -0.491 4.491 9 H 0.065 0.935 10 C 0.020 3.980 11 N -0.923 5.923 12 Si 0.915 3.085 13 H -0.299 1.299 14 H -0.288 1.288 15 H -0.229 1.229 16 C 0.118 3.882 17 C 0.146 3.854 18 C -0.100 4.100 19 C -0.105 4.105 20 C -0.175 4.175 21 C 0.062 3.938 22 N -0.499 5.499 23 C -0.221 4.221 24 C -0.072 4.072 25 S 0.126 5.874 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.033 0.967 32 H -0.028 1.028 33 H 0.258 0.742 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.169 0.831 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.918 2.506 -6.345 8.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.247 4.247 3 N -0.201 5.201 4 C -0.070 4.070 5 C 0.003 3.997 6 N -0.261 5.261 7 C 0.072 3.928 8 C -0.530 4.530 9 H 0.083 0.917 10 C -0.178 4.178 11 N -0.564 5.564 12 Si 0.741 3.259 13 H -0.226 1.226 14 H -0.214 1.214 15 H -0.151 1.151 16 C -0.010 4.010 17 C 0.006 3.994 18 C -0.121 4.121 19 C -0.131 4.131 20 C -0.195 4.195 21 C -0.093 4.093 22 N -0.210 5.210 23 C -0.342 4.342 24 C -0.131 4.131 25 S 0.381 5.619 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.051 0.949 32 H -0.011 1.011 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.151 0.849 38 H 0.169 0.831 39 H 0.186 0.814 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.471 2.100 -6.564 9.453 hybrid contribution 2.310 -0.106 1.416 2.712 sum -4.161 1.994 -5.148 6.913 Atomic orbital electron populations 1.20566 0.82605 1.04833 1.05128 1.27574 1.03134 0.90537 1.03437 1.66042 1.04817 1.32719 1.16484 1.19980 0.90245 0.93901 1.02849 1.20456 0.94439 0.94490 0.90285 1.61955 1.46670 1.03916 1.13598 1.19806 0.89799 0.90089 0.93124 1.21655 1.31590 1.07478 0.92231 0.91716 1.25411 0.95945 0.94967 1.01527 1.70022 1.37567 1.12932 1.35842 0.86220 0.76405 0.81014 0.82233 1.22604 1.21442 1.15136 1.20764 0.96527 0.91910 0.91829 1.20738 0.89267 0.92816 0.96555 1.21638 0.99134 0.95963 0.95371 1.21527 0.99641 0.96930 0.94990 1.22207 0.95059 1.00522 1.01715 1.22908 0.98186 0.98748 0.89487 1.67362 1.27300 1.11364 1.14926 1.25869 1.01293 0.95966 1.11109 1.20381 0.88139 1.01653 1.02929 1.83412 0.96870 1.12194 1.69464 0.87592 0.88382 0.89710 0.89394 0.92984 0.94925 1.01075 0.93328 0.89512 0.93535 0.86692 0.84851 0.83120 0.81374 0.91410 0.89721 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.46 71.24 0.75 -0.74 16 2 C 0.03 0.98 7.39 88.52 0.65 1.63 16 3 N -0.49 -18.51 10.53 -179.40 -1.89 -20.39 16 4 C 0.06 2.38 5.76 41.52 0.24 2.62 16 5 C 0.13 5.03 5.20 85.56 0.44 5.48 16 6 N -0.54 -23.45 4.55 -909.94 -4.14 -27.60 16 7 C 0.20 9.78 3.74 85.56 0.32 10.10 16 8 C -0.49 -26.10 5.77 25.60 0.15 -25.96 16 9 H 0.06 3.53 4.93 -2.91 -0.01 3.51 16 10 C 0.02 1.07 5.46 84.66 0.46 1.54 16 11 N -0.92 -52.15 13.29 21.45 0.28 -51.87 16 12 Si 0.91 42.51 28.79 68.60 1.98 44.48 16 13 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 14 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 15 H -0.23 -9.61 5.26 99.48 0.52 -9.08 16 16 C 0.12 4.62 5.28 85.56 0.45 5.07 16 17 C 0.15 6.01 4.01 42.55 0.17 6.18 16 18 C -0.10 -4.04 6.30 22.36 0.14 -3.90 16 19 C -0.11 -3.78 7.80 22.47 0.18 -3.61 16 20 C -0.18 -5.73 9.87 22.36 0.22 -5.51 16 21 C 0.06 2.17 11.18 84.67 0.95 3.12 16 22 N -0.50 -20.45 10.16 -183.88 -1.87 -22.32 16 23 C -0.22 -8.02 5.58 24.64 0.14 -7.89 16 24 C -0.07 -2.48 8.90 71.24 0.63 -1.85 16 25 S 0.13 3.79 23.18 -56.49 -1.31 2.48 16 26 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 3.08 7.93 -2.38 -0.02 3.07 16 30 H 0.05 1.81 6.69 -2.39 -0.02 1.80 16 31 H 0.03 1.73 3.76 -2.39 -0.01 1.72 16 32 H -0.03 -1.49 7.99 -2.39 -0.02 -1.51 16 33 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.09 3.10 7.93 -2.39 -0.02 3.08 16 35 H 0.05 1.71 7.91 -2.39 -0.02 1.69 16 36 H 0.12 4.80 7.98 -2.91 -0.02 4.78 16 37 H 0.13 4.27 8.06 -2.91 -0.02 4.24 16 38 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.17 4.70 8.06 -2.91 -0.02 4.68 16 40 H 0.07 2.88 6.48 -2.38 -0.02 2.86 16 41 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 42 H 0.08 2.55 6.76 -2.39 -0.02 2.53 16 Total: -1.00 -67.11 346.07 -0.21 -67.32 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.85 Total: 21.61 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.89 Total: -13.72 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -7.61 Total: -122.17 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.98 Total: 44.48 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.31 Total: 2.48 kcal Total: -67.11 -0.21 -67.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336822325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.826 kcal (2) G-P(sol) polarization free energy of solvation -67.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds