Wall clock time and date at job start Tue Mar 31 2020 11:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30299 * 126.34508 * 2 1 4 4 N 1.28529 * 110.07971 * 179.76577 * 3 2 1 5 5 C 1.31283 * 109.85638 * 0.39493 * 4 3 2 6 6 S 1.76198 * 126.48179 * 179.88129 * 5 4 3 7 7 C 1.81003 * 100.00093 * 359.68773 * 6 5 4 8 8 H 1.09000 * 109.46909 * 55.00336 * 7 6 5 9 9 C 1.52996 * 109.46962 * 294.99792 * 7 6 5 10 10 C 1.52996 * 109.46938 * 174.99964 * 7 6 5 11 11 C 1.50702 * 109.47159 * 294.99833 * 10 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 N 1.36540 * 107.03158 * 359.61694 * 5 4 3 20 20 C 1.46505 * 127.14179 * 180.22471 * 19 5 4 21 21 C 1.50698 * 109.46882 * 90.00238 * 20 19 5 22 22 C 1.38233 * 119.99831 * 269.72532 * 21 20 19 23 23 C 1.38240 * 119.99546 * 179.76948 * 22 21 20 24 24 C 1.38232 * 120.00274 * 0.50496 * 23 22 21 25 25 C 1.38242 * 119.99863 * 359.74939 * 24 23 22 26 26 C 1.38234 * 119.99721 * 89.99930 * 21 20 19 27 27 H 1.09000 * 109.47063 * 270.00157 * 1 2 3 28 28 H 1.09001 * 109.47058 * 29.99241 * 1 2 3 29 29 H 1.08999 * 109.47573 * 149.99358 * 1 2 3 30 30 H 1.09000 * 109.46774 * 180.02562 * 9 7 6 31 31 H 1.08993 * 109.47136 * 300.00175 * 9 7 6 32 32 H 1.09001 * 109.47101 * 60.00309 * 9 7 6 33 33 H 1.09004 * 109.47066 * 175.00036 * 10 7 6 34 34 H 1.08994 * 109.47405 * 54.99867 * 10 7 6 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.46638 * 210.00256 * 20 19 5 37 37 H 1.08994 * 109.46781 * 330.00004 * 20 19 5 38 38 H 1.07996 * 120.00531 * 0.02562 * 22 21 20 39 39 H 1.07998 * 119.99504 * 180.23154 * 23 22 21 40 40 H 1.07997 * 120.00121 * 179.72217 * 24 23 22 41 41 H 1.07993 * 120.00143 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.00682 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5130 0.6895 0.0049 5 6 3.5952 -0.6207 -0.0001 6 16 5.0748 -1.5775 0.0006 7 6 6.3067 -0.2514 0.0002 8 1 6.1220 0.4164 0.8417 9 6 6.2074 0.5364 -1.3076 10 6 7.7066 -0.8557 0.1265 11 6 7.8445 -1.5276 1.4684 12 1 7.0164 -1.5242 2.1617 13 6 9.0258 -2.1519 1.8087 14 7 10.0341 -2.1563 0.9643 15 14 9.1941 -2.9913 3.4689 16 1 7.9263 -2.8454 4.2282 17 1 9.4867 -4.4332 3.2672 18 1 10.3031 -2.3631 4.2311 19 7 2.3173 -1.1017 -0.0001 20 6 1.9008 -2.5062 -0.0002 21 6 1.7581 -2.9879 1.4206 22 6 2.8388 -3.5544 2.0702 23 6 2.7091 -3.9919 3.3751 24 6 1.4959 -3.8724 4.0268 25 6 0.4137 -3.3107 3.3753 26 6 0.5448 -2.8684 2.0722 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5139 30 1 6.9496 1.3347 -1.3080 31 1 6.3921 -0.1314 -2.1489 32 1 5.2101 0.9670 -1.3975 33 1 8.4526 -0.0661 0.0372 34 1 7.8581 -1.5900 -0.6646 35 1 10.8654 -2.5953 1.2038 36 1 0.9442 -2.6014 -0.5141 37 1 2.6507 -3.1075 -0.5141 38 1 3.7855 -3.6514 1.5597 39 1 3.5544 -4.4310 3.8839 40 1 1.3934 -4.2183 5.0447 41 1 -0.5343 -3.2178 3.8843 42 1 -0.3009 -2.4303 1.5631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340638660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:31 Heat of formation + Delta-G solvation = 87.124130 kcal Electronic energy + Delta-G solvation = -23944.894594 eV Core-core repulsion = 20630.965387 eV Total energy + Delta-G solvation = -3313.929207 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.63288 -39.38933 -35.38261 -34.53557 -32.43037 -31.97896 -31.40941 -31.01804 -28.01485 -27.21191 -26.65348 -23.30958 -22.95764 -22.48681 -21.76246 -20.96103 -20.13884 -17.58651 -17.01444 -16.37390 -16.31492 -15.84772 -15.30289 -15.17780 -14.86085 -14.53963 -14.06811 -13.58745 -13.50542 -13.22289 -13.06038 -12.83753 -12.79202 -12.51065 -12.50051 -11.85714 -11.66267 -11.58774 -11.33485 -11.16698 -11.08179 -10.80892 -10.70639 -10.51756 -10.21249 -10.10653 -9.63021 -9.45866 -9.35239 -9.14822 -9.06035 -9.02507 -8.42628 -7.04724 -6.07116 -4.09243 1.01072 1.26687 1.67198 1.88760 2.77326 2.92981 3.06672 3.27845 3.35992 3.40492 3.68777 4.33283 4.39684 4.41583 4.43916 4.79332 4.82786 4.86416 5.00585 5.09200 5.28332 5.30363 5.35403 5.44100 5.50445 5.65902 5.77467 5.77785 5.87413 5.90114 5.96318 6.16943 6.20403 6.26572 6.38641 6.41998 6.59120 6.64327 6.82028 6.84333 6.89689 7.49686 7.54036 7.90242 8.26832 8.92859 8.96045 9.55109 11.03973 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.005061 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.425622 B = 5531.441686 C = 7527.046904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.165 3.835 3 N -0.291 5.291 4 N -0.297 5.297 5 C 0.169 3.831 6 S 0.008 5.992 7 C -0.052 4.052 8 H 0.090 0.910 9 C -0.147 4.147 10 C 0.037 3.963 11 C -0.521 4.521 12 H 0.063 0.937 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.464 5.464 20 C 0.150 3.850 21 C -0.120 4.120 22 C -0.086 4.086 23 C -0.117 4.117 24 C -0.110 4.110 25 C -0.127 4.127 26 C -0.101 4.101 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.079 -4.080 -0.484 21.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 N -0.131 5.131 4 N -0.141 5.141 5 C -0.204 4.204 6 S 0.238 5.762 7 C -0.181 4.181 8 H 0.109 0.891 9 C -0.207 4.207 10 C -0.002 4.002 11 C -0.560 4.560 12 H 0.082 0.918 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.717 3.283 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.159 5.159 20 C 0.028 3.972 21 C -0.121 4.121 22 C -0.105 4.105 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.145 4.145 26 C -0.120 4.120 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.320 -3.856 -0.524 20.689 hybrid contribution -0.283 -0.510 1.038 1.191 sum -20.603 -4.365 0.514 21.067 Atomic orbital electron populations 1.20152 0.84312 1.03978 1.03560 1.24875 0.96533 0.82681 1.06368 1.73892 0.96939 1.24157 1.18076 1.74674 1.11228 1.06939 1.21250 1.27564 0.91453 0.95698 1.05709 1.85802 0.88592 1.10677 1.91161 1.23636 0.97744 0.95833 1.00905 0.89129 1.22124 1.02525 0.99928 0.96086 1.19110 0.86537 0.96527 0.98049 1.21292 0.99055 1.34511 1.01096 0.91833 1.24976 0.95813 0.96243 0.97028 1.69964 1.03784 1.43971 1.35466 0.86561 0.78231 0.79229 0.84240 1.19547 1.20978 1.20985 1.46484 1.05159 1.07605 1.56605 1.20728 1.03078 0.78563 0.94873 1.19871 0.94815 1.01642 0.95737 1.21351 0.98313 0.95725 0.95079 1.21265 0.97771 0.99702 0.94780 1.21253 0.93146 0.98572 0.99834 1.21092 0.98952 0.99636 0.94823 1.20992 0.96667 0.99245 0.95106 0.90013 0.88961 0.90833 0.91963 0.92697 0.91716 0.94113 0.95484 0.92928 0.87881 0.87470 0.84734 0.85415 0.85966 0.85985 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.25 36.00 0.37 -0.16 16 2 C 0.17 2.39 8.07 -153.99 -1.24 1.15 16 3 N -0.29 -5.37 12.17 32.99 0.40 -4.97 16 4 N -0.30 -5.98 9.76 30.68 0.30 -5.68 16 5 C 0.17 3.08 7.75 -88.34 -0.68 2.40 16 6 S 0.01 0.15 20.10 -107.50 -2.16 -2.01 16 7 C -0.05 -1.10 2.29 -26.74 -0.06 -1.16 16 8 H 0.09 2.04 8.14 -51.92 -0.42 1.62 16 9 C -0.15 -2.78 9.01 37.16 0.33 -2.44 16 10 C 0.04 0.91 4.44 -27.88 -0.12 0.78 16 11 C -0.52 -14.06 8.53 -34.44 -0.29 -14.35 16 12 H 0.06 1.71 7.60 -52.49 -0.40 1.31 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 15 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 N -0.46 -6.80 2.79 -114.82 -0.32 -7.12 16 20 C 0.15 1.64 6.01 -5.19 -0.03 1.61 16 21 C -0.12 -1.38 5.46 -104.63 -0.57 -1.95 16 22 C -0.09 -1.12 9.70 -39.58 -0.38 -1.51 16 23 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 24 C -0.11 -1.14 10.05 -39.58 -0.40 -1.53 16 25 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.45 7.27 -51.93 -0.38 0.07 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.23 5.92 -51.93 -0.31 0.92 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.10 0.78 7.20 -51.93 -0.37 0.40 16 37 H 0.11 1.15 7.80 -51.93 -0.41 0.75 16 38 H 0.13 1.88 7.59 -52.49 -0.40 1.48 16 39 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -32.68 366.70 -10.95 -43.63 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.05 Total: 0.04 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -4.36 Total: -20.38 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 1.12 Total: -42.95 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.16 Total: -2.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.68 -10.95 -43.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340638660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.757 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds