Wall clock time and date at job start Tue Mar 31 2020 11:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30299 * 126.34508 * 2 1 4 4 N 1.28529 * 110.07971 * 179.76577 * 3 2 1 5 5 C 1.31283 * 109.85638 * 0.39493 * 4 3 2 6 6 S 1.76198 * 126.48179 * 179.88129 * 5 4 3 7 7 C 1.81003 * 100.00093 * 359.68773 * 6 5 4 8 8 H 1.09000 * 109.46909 * 55.00336 * 7 6 5 9 9 C 1.52996 * 109.46962 * 294.99792 * 7 6 5 10 10 C 1.52996 * 109.46938 * 174.99964 * 7 6 5 11 11 C 1.50702 * 109.47159 * 294.99833 * 10 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 7 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 N 1.36540 * 107.03158 * 359.61694 * 5 4 3 20 20 C 1.46505 * 127.14179 * 180.22471 * 19 5 4 21 21 C 1.50698 * 109.46882 * 90.00238 * 20 19 5 22 22 C 1.38233 * 119.99831 * 269.72532 * 21 20 19 23 23 C 1.38240 * 119.99546 * 179.76948 * 22 21 20 24 24 C 1.38232 * 120.00274 * 0.50496 * 23 22 21 25 25 C 1.38242 * 119.99863 * 359.74939 * 24 23 22 26 26 C 1.38234 * 119.99721 * 89.99930 * 21 20 19 27 27 H 1.09000 * 109.47063 * 270.00157 * 1 2 3 28 28 H 1.09001 * 109.47058 * 29.99241 * 1 2 3 29 29 H 1.08999 * 109.47573 * 149.99358 * 1 2 3 30 30 H 1.09000 * 109.46774 * 180.02562 * 9 7 6 31 31 H 1.08993 * 109.47136 * 300.00175 * 9 7 6 32 32 H 1.09001 * 109.47101 * 60.00309 * 9 7 6 33 33 H 1.09004 * 109.47066 * 175.00036 * 10 7 6 34 34 H 1.08994 * 109.47405 * 54.99867 * 10 7 6 35 35 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.46638 * 210.00256 * 20 19 5 37 37 H 1.08994 * 109.46781 * 330.00004 * 20 19 5 38 38 H 1.07996 * 120.00531 * 0.02562 * 22 21 20 39 39 H 1.07998 * 119.99504 * 180.23154 * 23 22 21 40 40 H 1.07997 * 120.00121 * 179.72217 * 24 23 22 41 41 H 1.07993 * 120.00143 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.00682 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2791 1.0495 0.0000 4 7 3.5130 0.6895 0.0049 5 6 3.5952 -0.6207 -0.0001 6 16 5.0748 -1.5775 0.0006 7 6 6.3067 -0.2514 0.0002 8 1 6.1220 0.4164 0.8417 9 6 6.2074 0.5364 -1.3076 10 6 7.7066 -0.8557 0.1265 11 6 7.8445 -1.5276 1.4684 12 1 7.0164 -1.5242 2.1617 13 6 9.0258 -2.1519 1.8087 14 7 10.0341 -2.1563 0.9643 15 14 9.1941 -2.9913 3.4689 16 1 7.9263 -2.8454 4.2282 17 1 9.4867 -4.4332 3.2672 18 1 10.3031 -2.3631 4.2311 19 7 2.3173 -1.1017 -0.0001 20 6 1.9008 -2.5062 -0.0002 21 6 1.7581 -2.9879 1.4206 22 6 2.8388 -3.5544 2.0702 23 6 2.7091 -3.9919 3.3751 24 6 1.4959 -3.8724 4.0268 25 6 0.4137 -3.3107 3.3753 26 6 0.5448 -2.8684 2.0722 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8901 -0.5137 29 1 -0.3634 -0.8899 -0.5139 30 1 6.9496 1.3347 -1.3080 31 1 6.3921 -0.1314 -2.1489 32 1 5.2101 0.9670 -1.3975 33 1 8.4526 -0.0661 0.0372 34 1 7.8581 -1.5900 -0.6646 35 1 10.8654 -2.5953 1.2038 36 1 0.9442 -2.6014 -0.5141 37 1 2.6507 -3.1075 -0.5141 38 1 3.7855 -3.6514 1.5597 39 1 3.5544 -4.4310 3.8839 40 1 1.3934 -4.2183 5.0447 41 1 -0.5343 -3.2178 3.8843 42 1 -0.3009 -2.4303 1.5631 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340638660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:30 Heat of formation + Delta-G solvation = 71.495932 kcal Electronic energy + Delta-G solvation = -23945.572283 eV Core-core repulsion = 20630.965387 eV Total energy + Delta-G solvation = -3314.606896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.87271 -40.20634 -36.64927 -36.22846 -34.13711 -33.30115 -32.35886 -31.82631 -29.59286 -28.60762 -27.57687 -25.28625 -24.03356 -23.49181 -22.74314 -22.46678 -21.41518 -18.77297 -18.51482 -17.97030 -17.51730 -16.92805 -16.58439 -16.43127 -16.14920 -16.02219 -15.14123 -14.80322 -14.41337 -14.34673 -14.30021 -13.90808 -13.78839 -13.64243 -13.60729 -13.32327 -13.22722 -13.04543 -12.70169 -12.58606 -12.46705 -12.42079 -12.28799 -11.96461 -11.62276 -11.53004 -11.29775 -11.15303 -11.02821 -10.68261 -10.56064 -9.87361 -9.85559 -8.52938 -8.21197 -6.30041 0.09065 0.32183 0.45135 0.68695 1.26739 1.38131 1.39749 1.52162 1.76396 1.77561 2.40189 2.85641 3.13920 3.48401 3.53163 3.59421 4.00827 4.06037 4.06794 4.07660 4.20145 4.23759 4.29785 4.44659 4.52613 4.56478 4.63899 4.70039 4.87118 4.89125 4.95217 4.98886 5.00501 5.05478 5.12053 5.24637 5.37680 5.47823 5.48191 5.55769 5.58535 5.75945 5.84314 6.04015 6.15832 6.81429 7.38064 7.64320 8.90634 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.005061 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.425622 B = 5531.441686 C = 7527.046904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.188 3.812 3 N -0.338 5.338 4 N -0.330 5.330 5 C 0.152 3.848 6 S 0.015 5.985 7 C -0.050 4.050 8 H 0.071 0.929 9 C -0.136 4.136 10 C 0.046 3.954 11 C -0.531 4.531 12 H 0.060 0.940 13 C 0.011 3.989 14 N -0.928 5.928 15 Si 0.954 3.046 16 H -0.265 1.265 17 H -0.275 1.275 18 H -0.280 1.280 19 N -0.457 5.457 20 C 0.143 3.857 21 C -0.129 4.129 22 C -0.114 4.114 23 C -0.140 4.140 24 C -0.114 4.114 25 C -0.127 4.127 26 C -0.098 4.098 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.018 0.982 34 H 0.009 0.991 35 H 0.264 0.736 36 H 0.149 0.851 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.154 0.846 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.925 -4.899 0.241 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 N -0.178 5.178 4 N -0.173 5.173 5 C -0.224 4.224 6 S 0.244 5.756 7 C -0.180 4.180 8 H 0.089 0.911 9 C -0.195 4.195 10 C 0.008 3.992 11 C -0.569 4.569 12 H 0.078 0.922 13 C -0.188 4.188 14 N -0.568 5.568 15 Si 0.779 3.221 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.205 1.205 19 N -0.151 5.151 20 C 0.023 3.977 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.158 4.158 24 C -0.132 4.132 25 C -0.144 4.144 26 C -0.116 4.116 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.166 0.834 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.171 0.829 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -24.182 -4.682 0.200 24.632 hybrid contribution 0.746 -0.266 0.828 1.146 sum -23.436 -4.948 1.028 23.975 Atomic orbital electron populations 1.20534 0.79791 1.06368 1.05505 1.25973 0.98573 0.81474 1.02198 1.73819 0.96798 1.26179 1.20956 1.74566 1.12774 1.08019 1.21988 1.27205 0.92379 0.95415 1.07365 1.85569 0.88800 1.09279 1.91950 1.23320 0.96819 0.96401 1.01410 0.91087 1.22011 1.02629 0.99841 0.95000 1.18875 0.88412 0.95258 0.96698 1.21538 0.99036 1.34547 1.01807 0.92206 1.25784 0.95478 0.96901 1.00625 1.70073 1.04345 1.44978 1.37383 0.85557 0.78318 0.78379 0.79858 1.18931 1.20101 1.20529 1.46725 1.03741 1.09183 1.55420 1.21106 1.05067 0.76332 0.95234 1.19950 0.95172 1.01882 0.95994 1.21353 0.98342 0.97720 0.95859 1.21391 0.98867 1.00712 0.94836 1.21555 0.92665 0.98195 1.00794 1.21525 0.99780 0.98236 0.94879 1.21397 0.96733 0.98212 0.95238 0.88021 0.87963 0.87120 0.91527 0.91914 0.91688 0.96401 0.97234 0.92686 0.83368 0.87989 0.87024 0.85856 0.83982 0.82859 0.82655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 10.25 71.23 0.73 -0.06 16 2 C 0.19 4.95 8.07 137.63 1.11 6.06 16 3 N -0.34 -12.23 12.17 -49.53 -0.60 -12.83 16 4 N -0.33 -13.42 9.76 -56.85 -0.55 -13.98 16 5 C 0.15 5.56 7.75 179.55 1.39 6.95 16 6 S 0.01 0.59 20.10 -56.49 -1.14 -0.55 16 7 C -0.05 -2.22 2.29 30.59 0.07 -2.15 16 8 H 0.07 3.38 8.14 -2.40 -0.02 3.36 16 9 C -0.14 -5.28 9.01 71.98 0.65 -4.63 16 10 C 0.05 2.41 4.44 29.85 0.13 2.54 16 11 C -0.53 -29.66 8.53 25.60 0.22 -29.44 16 12 H 0.06 3.32 7.60 -2.91 -0.02 3.30 16 13 C 0.01 0.60 5.46 84.66 0.46 1.06 16 14 N -0.93 -55.20 13.29 21.45 0.28 -54.92 16 15 Si 0.95 44.11 29.54 68.60 2.03 46.13 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 19 N -0.46 -12.56 2.79 -517.18 -1.45 -14.01 16 20 C 0.14 2.76 6.01 85.63 0.51 3.27 16 21 C -0.13 -2.69 5.46 -19.87 -0.11 -2.80 16 22 C -0.11 -2.98 9.70 22.27 0.22 -2.76 16 23 C -0.14 -3.36 10.05 22.27 0.22 -3.13 16 24 C -0.11 -2.12 10.05 22.27 0.22 -1.89 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 26 C -0.10 -1.50 9.70 22.27 0.22 -1.29 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.11 0.60 7.27 -2.39 -0.02 0.59 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 2.54 5.92 -2.39 -0.01 2.53 16 33 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 36 H 0.15 1.47 7.20 -2.39 -0.02 1.46 16 37 H 0.10 2.08 7.80 -2.39 -0.02 2.06 16 38 H 0.11 3.32 7.59 -2.91 -0.02 3.30 16 39 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -74.46 366.70 5.86 -68.61 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.01 Total: 11.51 kcal Atomic # 6 Polarization: -36.24 SS G_CDS: 6.27 Total: -29.97 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -2.32 Total: -95.74 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -1.14 Total: -0.55 kcal Total: -74.46 5.86 -68.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340638660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.102 kcal (2) G-P(sol) polarization free energy of solvation -74.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds