Wall clock time and date at job start Tue Mar 31 2020 11:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47436 * 2 1 4 4 C 1.53005 * 109.47176 * 239.99720 * 2 1 3 5 5 C 1.50704 * 109.46669 * 60.00424 * 4 2 1 6 6 H 1.07996 * 119.99918 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99750 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00214 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47106 * 60.00128 * 9 7 5 11 11 H 1.48502 * 109.47305 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46913 * 300.00258 * 9 7 5 13 13 C 1.53002 * 109.46857 * 120.00319 * 2 1 3 14 14 N 1.46498 * 109.46994 * 299.99797 * 13 2 1 15 15 C 1.31040 * 120.00036 * 120.00467 * 14 13 2 16 16 N 1.35629 * 125.73880 * 180.02562 * 15 14 13 17 17 H 0.97001 * 122.93668 * 359.97438 * 16 15 14 18 18 N 1.37812 * 114.11868 * 180.26692 * 16 15 14 19 19 C 1.28499 * 116.33149 * 359.53940 * 18 16 15 20 20 C 1.47947 * 124.83770 * 180.19036 * 19 18 16 21 21 C 1.39516 * 120.13530 * 180.02562 * 20 19 18 22 22 C 1.37981 * 119.85633 * 179.69935 * 21 20 19 23 23 C 1.38344 * 120.14062 * 0.58321 * 22 21 20 24 24 C 1.38346 * 120.27868 * 359.71484 * 23 22 21 25 25 C 1.37975 * 120.14184 * 359.97438 * 24 23 22 26 26 S 1.75866 * 110.31439 * 0.43648 * 19 18 16 27 27 H 1.08994 * 109.46948 * 300.00193 * 1 2 3 28 28 H 1.09009 * 109.46729 * 59.99916 * 1 2 3 29 29 H 1.09006 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47449 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47145 * 300.00228 * 3 2 1 32 32 H 1.09002 * 109.46875 * 59.99972 * 3 2 1 33 33 H 1.09003 * 109.47144 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47257 * 300.00181 * 4 2 1 35 35 H 0.97000 * 120.00189 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46787 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.47528 * 59.99849 * 13 2 1 38 38 H 1.08000 * 120.07259 * 359.97438 * 21 20 19 39 39 H 1.08005 * 119.93028 * 180.31965 * 22 21 20 40 40 H 1.07999 * 119.86220 * 179.69548 * 23 22 21 41 41 H 1.08002 * 119.93181 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.07107 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6273 -1.5509 -3.8526 9 14 1.2481 0.3986 -5.2572 10 1 1.7421 1.7990 -5.2571 11 1 1.7442 -0.3006 -6.4697 12 1 -0.2369 0.3976 -5.2573 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 0.7982 -0.6676 3.3080 16 7 0.2841 -0.1443 4.4487 17 1 0.4390 0.7725 4.7250 18 7 -0.4724 -1.0310 5.1841 19 6 -0.5975 -2.2137 4.6974 20 6 -1.3683 -3.3090 5.3259 21 6 -1.4384 -4.5590 4.7102 22 6 -2.1537 -5.5783 5.3045 23 6 -2.8106 -5.3593 6.5022 24 6 -2.7500 -4.1203 7.1146 25 6 -2.0328 -3.0947 6.5338 26 16 0.2840 -2.3465 3.1814 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7209 -1.2495 34 1 1.6767 -1.7490 -1.2492 35 1 2.8622 -1.8819 -4.7336 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7490 1.2492 38 1 -0.9301 -4.7298 3.7727 39 1 -2.2045 -6.5480 4.8315 40 1 -3.3732 -6.1589 6.9610 41 1 -3.2653 -3.9554 8.0494 42 1 -1.9859 -2.1279 7.0130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340889743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:03 Heat of formation + Delta-G solvation = 83.564477 kcal Electronic energy + Delta-G solvation = -23011.647814 eV Core-core repulsion = 19697.564249 eV Total energy + Delta-G solvation = -3314.083565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.07926 -39.16897 -37.44613 -34.69744 -32.82239 -31.97996 -31.35442 -29.92466 -27.10128 -26.46921 -26.23575 -24.44566 -23.37706 -22.96933 -22.31524 -20.49048 -18.88686 -17.80992 -17.27476 -16.94629 -16.21284 -15.83603 -15.51649 -15.27678 -14.69694 -14.37821 -14.03328 -13.87793 -13.74779 -13.60747 -13.20078 -12.76591 -12.65239 -12.10668 -12.00101 -11.81376 -11.58239 -11.50815 -11.04477 -10.91146 -10.80569 -10.66439 -10.54640 -10.48117 -10.17770 -9.96419 -9.71176 -9.33512 -9.32454 -9.01081 -8.95158 -8.88071 -8.31916 -7.59805 -5.96476 -3.96875 0.33947 0.87578 1.03842 1.39590 1.72427 2.15195 2.29213 3.35059 3.39497 3.41980 3.47982 3.98044 4.48262 4.52308 4.59786 4.70931 4.82706 5.06355 5.10719 5.28672 5.39306 5.49399 5.61304 5.67149 5.74619 5.92488 6.04970 6.08190 6.12626 6.14551 6.34039 6.48459 6.53701 6.62754 6.74036 6.79997 6.85652 7.14141 7.18222 7.22146 7.26672 7.67238 7.80416 7.86422 8.02840 8.46642 9.07426 9.65791 11.15106 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.002743 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.904326 B =10205.466637 C =11017.316032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.052 4.052 3 C -0.118 4.118 4 C 0.034 3.966 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.074 3.926 14 N -0.519 5.519 15 C 0.324 3.676 16 N -0.520 5.520 17 H 0.447 0.553 18 N -0.215 5.215 19 C 0.100 3.900 20 C -0.021 4.021 21 C -0.088 4.088 22 C -0.117 4.117 23 C -0.104 4.104 24 C -0.122 4.122 25 C -0.078 4.078 26 S -0.002 6.002 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.017 0.983 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 -6.296 22.913 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.052 4.052 3 C -0.176 4.176 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.056 4.056 14 N -0.248 5.248 15 C -0.066 4.066 16 N -0.256 5.256 17 H 0.294 0.706 18 N -0.030 5.030 19 C -0.199 4.199 20 C -0.025 4.025 21 C -0.108 4.108 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.099 4.099 26 S 0.226 5.774 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.923 -5.850 22.395 24.807 hybrid contribution -0.278 0.748 -0.731 1.082 sum -9.202 -5.102 21.664 24.083 Atomic orbital electron populations 1.21728 0.95639 1.00520 1.00367 1.20677 0.95123 0.96114 0.93324 1.21625 0.99853 0.95717 1.00356 1.19147 0.96218 0.95101 0.89877 1.21156 1.30951 1.11980 0.90495 0.92348 1.25002 0.95363 0.95105 0.99017 1.69952 1.37132 1.23118 1.23458 0.86714 0.79178 0.79814 0.82638 1.20316 1.21390 1.20326 1.22446 1.00159 0.94795 0.88175 1.71689 1.15713 1.31586 1.05850 1.25279 0.97427 0.91452 0.92439 1.45454 1.48521 1.13973 1.17684 0.70566 1.73727 1.10117 1.00646 1.18473 1.25334 1.02576 0.94407 0.97534 1.17626 0.98838 0.90367 0.95627 1.21257 0.98313 0.91596 0.99666 1.21092 0.97447 0.99105 0.95858 1.21354 0.98374 0.97253 0.95325 1.21129 0.99499 0.93040 1.00367 1.21274 0.95129 0.99822 0.93698 1.86343 1.55597 1.12674 1.22759 0.95162 0.91662 0.93965 0.93929 0.92255 0.94123 0.96478 0.96644 0.93054 0.89666 0.93821 0.85128 0.85085 0.85552 0.85328 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.06 37.16 0.30 -2.25 16 2 C -0.05 -1.08 0.60 -154.51 -0.09 -1.18 16 3 C -0.12 -2.40 8.06 37.16 0.30 -2.10 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -14.00 7.65 -34.44 -0.26 -14.26 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.07 1.39 5.24 -4.04 -0.02 1.37 16 14 N -0.52 -8.88 9.13 -61.39 -0.56 -9.44 16 15 C 0.32 4.93 8.42 -89.39 -0.75 4.17 16 16 N -0.52 -6.72 6.93 30.42 0.21 -6.51 16 17 H 0.45 4.80 8.96 -184.29 -1.65 3.15 16 18 N -0.21 -2.69 11.51 32.64 0.38 -2.31 16 19 C 0.10 1.23 7.33 -14.97 -0.11 1.12 16 20 C -0.02 -0.21 5.87 -104.97 -0.62 -0.83 16 21 C -0.09 -0.80 9.59 -39.20 -0.38 -1.18 16 22 C -0.12 -0.84 10.03 -39.64 -0.40 -1.24 16 23 C -0.10 -0.66 10.04 -39.50 -0.40 -1.06 16 24 C -0.12 -0.83 10.03 -39.64 -0.40 -1.23 16 25 C -0.08 -0.67 9.67 -39.20 -0.38 -1.05 16 26 S 0.00 -0.03 20.33 -107.50 -2.19 -2.22 16 27 H 0.03 0.57 7.60 -51.93 -0.39 0.17 16 28 H 0.06 1.40 6.62 -51.92 -0.34 1.05 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 32 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.04 0.81 6.23 -51.93 -0.32 0.49 16 38 H 0.13 1.16 7.25 -52.49 -0.38 0.78 16 39 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.13 1.07 7.79 -52.48 -0.41 0.66 16 LS Contribution 359.70 15.07 5.42 5.42 Total: -1.00 -31.13 359.70 -11.49 -42.62 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.06 Total: -0.72 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -3.41 Total: -17.46 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.76 Total: -44.34 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.19 Total: -2.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.13 -11.49 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340889743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.189 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds