Wall clock time and date at job start Tue Mar 31 2020 11:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47436 * 2 1 4 4 C 1.53005 * 109.47176 * 239.99720 * 2 1 3 5 5 C 1.50704 * 109.46669 * 60.00424 * 4 2 1 6 6 H 1.07996 * 119.99918 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99750 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00214 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47106 * 60.00128 * 9 7 5 11 11 H 1.48502 * 109.47305 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46913 * 300.00258 * 9 7 5 13 13 C 1.53002 * 109.46857 * 120.00319 * 2 1 3 14 14 N 1.46498 * 109.46994 * 299.99797 * 13 2 1 15 15 C 1.31040 * 120.00036 * 120.00467 * 14 13 2 16 16 N 1.35629 * 125.73880 * 180.02562 * 15 14 13 17 17 H 0.97001 * 122.93668 * 359.97438 * 16 15 14 18 18 N 1.37812 * 114.11868 * 180.26692 * 16 15 14 19 19 C 1.28499 * 116.33149 * 359.53940 * 18 16 15 20 20 C 1.47947 * 124.83770 * 180.19036 * 19 18 16 21 21 C 1.39516 * 120.13530 * 180.02562 * 20 19 18 22 22 C 1.37981 * 119.85633 * 179.69935 * 21 20 19 23 23 C 1.38344 * 120.14062 * 0.58321 * 22 21 20 24 24 C 1.38346 * 120.27868 * 359.71484 * 23 22 21 25 25 C 1.37975 * 120.14184 * 359.97438 * 24 23 22 26 26 S 1.75866 * 110.31439 * 0.43648 * 19 18 16 27 27 H 1.08994 * 109.46948 * 300.00193 * 1 2 3 28 28 H 1.09009 * 109.46729 * 59.99916 * 1 2 3 29 29 H 1.09006 * 109.47083 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47449 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47145 * 300.00228 * 3 2 1 32 32 H 1.09002 * 109.46875 * 59.99972 * 3 2 1 33 33 H 1.09003 * 109.47144 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47257 * 300.00181 * 4 2 1 35 35 H 0.97000 * 120.00189 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46787 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.47528 * 59.99849 * 13 2 1 38 38 H 1.08000 * 120.07259 * 359.97438 * 21 20 19 39 39 H 1.08005 * 119.93028 * 180.31965 * 22 21 20 40 40 H 1.07999 * 119.86220 * 179.69548 * 23 22 21 41 41 H 1.08002 * 119.93181 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.07107 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6273 -1.5509 -3.8526 9 14 1.2481 0.3986 -5.2572 10 1 1.7421 1.7990 -5.2571 11 1 1.7442 -0.3006 -6.4697 12 1 -0.2369 0.3976 -5.2573 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 0.7982 -0.6676 3.3080 16 7 0.2841 -0.1443 4.4487 17 1 0.4390 0.7725 4.7250 18 7 -0.4724 -1.0310 5.1841 19 6 -0.5975 -2.2137 4.6974 20 6 -1.3683 -3.3090 5.3259 21 6 -1.4384 -4.5590 4.7102 22 6 -2.1537 -5.5783 5.3045 23 6 -2.8106 -5.3593 6.5022 24 6 -2.7500 -4.1203 7.1146 25 6 -2.0328 -3.0947 6.5338 26 16 0.2840 -2.3465 3.1814 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 -0.7209 -1.2495 34 1 1.6767 -1.7490 -1.2492 35 1 2.8622 -1.8819 -4.7336 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7490 1.2492 38 1 -0.9301 -4.7298 3.7727 39 1 -2.2045 -6.5480 4.8315 40 1 -3.3732 -6.1589 6.9610 41 1 -3.2653 -3.9554 8.0494 42 1 -1.9859 -2.1279 7.0130 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340889743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:02 Heat of formation + Delta-G solvation = 66.430435 kcal Electronic energy + Delta-G solvation = -23012.390802 eV Core-core repulsion = 19697.564249 eV Total energy + Delta-G solvation = -3314.826553 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05097 -39.91371 -39.02472 -36.05578 -34.47348 -33.35391 -31.94543 -30.84949 -29.08028 -28.05699 -27.73232 -25.73709 -24.66864 -23.89206 -23.49054 -21.33369 -20.14522 -19.36430 -18.38654 -18.22892 -17.76481 -16.79277 -16.52029 -16.45398 -16.19480 -15.51422 -15.39113 -15.31031 -14.68842 -14.42574 -14.31368 -14.16067 -13.99566 -13.91773 -13.56403 -12.98831 -12.77538 -12.74289 -12.61185 -12.38734 -12.34632 -12.22714 -12.12975 -12.02441 -11.63443 -11.50480 -11.11876 -11.07075 -10.83449 -10.51200 -10.39471 -9.91325 -9.75189 -8.77975 -8.14588 -6.22126 -0.45955 -0.24733 0.27225 0.45615 0.73246 1.10382 1.26859 1.40617 1.42742 1.50152 2.43174 2.86806 2.96895 3.18866 3.68374 3.87131 4.00272 4.05448 4.10104 4.20416 4.30068 4.30783 4.52244 4.53016 4.62169 4.74907 4.80112 4.91080 4.96307 5.06599 5.10600 5.11465 5.40994 5.43316 5.44004 5.47660 5.49363 5.55265 5.57184 5.76823 5.83181 5.88050 5.98437 6.05685 6.31507 6.67576 6.90897 7.44809 8.97337 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.021017 B = 0.002743 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.904326 B =10205.466637 C =11017.316032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.109 4.109 4 C 0.042 3.958 5 C -0.517 4.517 6 H 0.064 0.936 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.085 3.915 14 N -0.542 5.542 15 C 0.328 3.672 16 N -0.513 5.513 17 H 0.456 0.544 18 N -0.221 5.221 19 C 0.114 3.886 20 C -0.049 4.049 21 C -0.100 4.100 22 C -0.120 4.120 23 C -0.095 4.095 24 C -0.121 4.121 25 C -0.083 4.083 26 S -0.013 6.013 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.057 0.943 33 H -0.009 1.009 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.079 0.921 37 H 0.040 0.960 38 H 0.125 0.875 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.156 0.844 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.531 -6.568 24.725 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.166 4.166 4 C 0.004 3.996 5 C -0.555 4.555 6 H 0.082 0.918 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.194 1.194 13 C -0.046 4.046 14 N -0.274 5.274 15 C -0.061 4.061 16 N -0.250 5.250 17 H 0.305 0.695 18 N -0.035 5.035 19 C -0.184 4.184 20 C -0.054 4.054 21 C -0.121 4.121 22 C -0.138 4.138 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.104 4.104 26 S 0.217 5.783 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.009 0.991 34 H 0.007 0.993 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.143 0.857 39 H 0.170 0.830 40 H 0.175 0.825 41 H 0.174 0.826 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.021 -6.105 24.246 27.324 hybrid contribution 0.252 0.650 -1.100 1.302 sum -10.769 -5.455 23.147 26.105 Atomic orbital electron populations 1.21586 0.94931 1.00214 1.00346 1.20514 0.95587 0.96285 0.92522 1.21519 0.99567 0.95083 1.00461 1.18993 0.94445 0.94128 0.91996 1.21509 1.30578 1.12030 0.91352 0.91822 1.25884 0.95611 0.95868 1.02431 1.70091 1.38547 1.24738 1.24209 0.85638 0.78914 0.78788 0.78553 1.19400 1.21122 1.19365 1.22128 0.99790 0.94406 0.88272 1.71675 1.18042 1.31652 1.06023 1.25438 0.96226 0.91998 0.92450 1.45541 1.47970 1.14578 1.16911 0.69459 1.73779 1.10760 1.00686 1.18249 1.25751 1.01626 0.94814 0.96257 1.17767 1.00427 0.90238 0.96919 1.21362 0.99050 0.91915 0.99793 1.21405 0.96746 0.99417 0.96249 1.21778 0.97206 0.97863 0.94536 1.21484 0.98690 0.92570 1.01138 1.21421 0.95184 1.00699 0.93140 1.86434 1.55874 1.11786 1.24228 0.93619 0.92982 0.94419 0.94291 0.93568 0.92354 0.99077 0.99257 0.93024 0.90319 0.94214 0.85741 0.83013 0.82480 0.82598 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 8.06 71.98 0.58 -4.04 16 2 C -0.05 -2.06 0.60 -52.18 -0.03 -2.10 16 3 C -0.11 -4.44 8.06 71.98 0.58 -3.86 16 4 C 0.04 2.23 4.04 29.85 0.12 2.35 16 5 C -0.52 -29.03 7.65 25.60 0.20 -28.84 16 6 H 0.06 3.45 5.68 -2.91 -0.02 3.43 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 8 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 9 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.08 3.25 5.24 86.38 0.45 3.70 16 14 N -0.54 -18.47 9.13 -348.13 -3.18 -21.65 16 15 C 0.33 9.87 8.42 179.92 1.52 11.39 16 16 N -0.51 -12.83 6.93 -57.68 -0.40 -13.23 16 17 H 0.46 9.33 8.96 -214.76 -1.93 7.40 16 18 N -0.22 -5.31 11.51 -50.63 -0.58 -5.90 16 19 C 0.11 2.72 7.33 87.76 0.64 3.37 16 20 C -0.05 -0.97 5.87 -20.09 -0.12 -1.08 16 21 C -0.10 -1.73 9.59 22.52 0.22 -1.52 16 22 C -0.12 -1.44 10.03 22.23 0.22 -1.22 16 23 C -0.09 -0.87 10.04 22.32 0.22 -0.65 16 24 C -0.12 -1.25 10.03 22.23 0.22 -1.03 16 25 C -0.08 -1.28 9.67 22.52 0.22 -1.06 16 26 S -0.01 -0.35 20.33 -56.49 -1.15 -1.50 16 27 H 0.04 1.70 7.60 -2.39 -0.02 1.68 16 28 H 0.05 2.23 6.62 -2.38 -0.02 2.21 16 29 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.97 6.62 -2.39 -0.02 1.95 16 32 H 0.06 2.15 7.60 -2.39 -0.02 2.14 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.04 1.52 6.23 -2.39 -0.01 1.51 16 38 H 0.12 2.20 7.25 -2.91 -0.02 2.18 16 39 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 42 H 0.14 1.95 7.79 -2.91 -0.02 1.93 16 Total: -1.00 -67.57 359.70 1.62 -65.95 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -0.89 Total: 10.62 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 5.51 Total: -24.17 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -3.88 Total: -97.73 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.15 Total: -1.50 kcal Total: -67.57 1.62 -65.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340889743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.381 kcal (2) G-P(sol) polarization free energy of solvation -67.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds