Wall clock time and date at job start Tue Mar 31 2020 11:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46896 * 2 1 4 4 C 1.52997 * 109.47068 * 239.99754 * 2 1 3 5 5 C 1.50701 * 109.46962 * 60.00332 * 4 2 1 6 6 H 1.07998 * 120.00299 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99873 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00383 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47072 * 89.99570 * 9 7 5 11 11 H 1.48491 * 109.47516 * 209.99769 * 9 7 5 12 12 H 1.48503 * 109.47091 * 330.00062 * 9 7 5 13 13 C 1.53004 * 109.46945 * 119.99757 * 2 1 3 14 14 N 1.46501 * 109.47218 * 299.99904 * 13 2 1 15 15 C 1.31831 * 119.99613 * 120.00094 * 14 13 2 16 16 N 1.34345 * 127.70962 * 179.97438 * 15 14 13 17 17 C 1.29414 * 116.98547 * 179.97438 * 16 15 14 18 18 C 1.47909 * 120.78815 * 179.72917 * 17 16 15 19 19 C 1.39546 * 120.13701 * 179.74741 * 18 17 16 20 20 C 1.37970 * 119.84804 * 179.78607 * 19 18 17 21 21 C 1.38350 * 120.14363 * 0.46673 * 20 19 18 22 22 C 1.38342 * 120.28852 * 359.78870 * 21 20 19 23 23 C 1.37975 * 120.14297 * 359.97270 * 22 21 20 24 24 N 1.35213 * 118.42546 * 359.97438 * 17 16 15 25 25 H 0.96997 * 127.12794 * 180.02562 * 24 17 16 26 26 S 1.70069 * 105.74229 * 0.02562 * 24 17 16 27 27 H 1.09001 * 109.46742 * 300.00552 * 1 2 3 28 28 H 1.09001 * 109.46604 * 59.99835 * 1 2 3 29 29 H 1.08994 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46986 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47629 * 299.99538 * 3 2 1 32 32 H 1.09001 * 109.47876 * 60.00142 * 3 2 1 33 33 H 1.08996 * 109.46919 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47079 * 300.00416 * 4 2 1 35 35 H 0.97000 * 120.00589 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47061 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46895 * 59.99772 * 13 2 1 38 38 H 1.08001 * 120.07488 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.92235 * 180.24989 * 20 19 18 40 40 H 1.08004 * 119.85146 * 179.76245 * 21 20 19 41 41 H 1.08002 * 119.93131 * 180.02562 * 22 21 20 42 42 H 1.07993 * 120.07350 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6264 -1.5515 -3.8526 9 14 1.2472 0.3979 -5.2572 10 1 2.2252 1.4395 -5.6619 11 1 1.0819 -0.5814 -6.3610 12 1 -0.0608 1.0355 -4.9610 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 0.7938 -0.6713 3.3132 16 7 0.2654 -0.1940 4.4525 17 6 -0.4534 -1.0105 5.1536 18 6 -1.0704 -0.5752 6.4254 19 6 -1.8473 -1.4653 7.1680 20 6 -2.4164 -1.0542 8.3557 21 6 -2.2262 0.2400 8.8060 22 6 -1.4615 1.1289 8.0718 23 6 -0.8827 0.7290 6.8848 24 7 -0.6228 -2.2724 4.6985 25 1 -1.1324 -2.9828 5.1186 26 16 0.2428 -2.3559 3.2369 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -1.7489 -1.2492 35 1 2.8602 -1.8834 -4.7336 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7489 1.2493 38 1 -2.0002 -2.4746 6.8153 39 1 -3.0146 -1.7434 8.9334 40 1 -2.6771 0.5579 9.7345 41 1 -1.3164 2.1378 8.4289 42 1 -0.2857 1.4236 6.3128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340894481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:59 Heat of formation + Delta-G solvation = 78.816858 kcal Electronic energy + Delta-G solvation = -23006.473170 eV Core-core repulsion = 19692.183733 eV Total energy + Delta-G solvation = -3314.289437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59909 -38.81232 -37.41509 -34.65358 -32.67263 -31.92681 -31.53461 -31.13418 -27.11524 -26.49431 -26.21216 -24.70997 -23.12252 -22.77189 -21.40381 -20.86623 -19.08523 -17.94442 -17.76164 -16.63164 -16.19287 -15.83963 -15.53346 -15.23516 -14.98115 -14.43850 -14.19175 -13.90091 -13.80437 -13.42306 -13.14656 -12.66114 -12.23859 -12.16721 -11.97520 -11.73144 -11.58199 -11.52943 -11.06318 -10.88431 -10.75794 -10.66535 -10.47825 -10.38016 -10.16059 -10.08985 -9.66777 -9.45304 -9.19430 -8.99789 -8.81326 -8.69413 -8.29554 -7.38542 -5.94001 -3.94064 0.14270 0.64265 0.91506 1.42110 1.61651 2.90529 3.29367 3.35883 3.42121 3.44751 3.45608 4.07400 4.27851 4.37420 4.48945 4.52521 4.67846 4.91332 5.03432 5.31809 5.41242 5.46050 5.56089 5.70545 5.78255 5.90405 5.96216 6.00193 6.03968 6.19621 6.38558 6.40857 6.51585 6.54236 6.70537 6.82486 6.86999 7.20936 7.27088 7.30206 7.34033 7.70635 7.84238 7.99070 8.05919 8.49781 9.10498 9.68459 11.17622 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.002494 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.841768 B =11223.168127 C =11531.451559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.050 4.050 3 C -0.120 4.120 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.459 5.459 15 C 0.336 3.664 16 N -0.518 5.518 17 C 0.440 3.560 18 C -0.055 4.055 19 C -0.090 4.090 20 C -0.124 4.124 21 C -0.095 4.095 22 C -0.124 4.124 23 C -0.054 4.054 24 N -0.695 5.695 25 H 0.442 0.558 26 S 0.076 5.924 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.017 0.983 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.344 -1.166 27.316 29.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.051 4.051 3 C -0.177 4.177 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.183 5.183 15 C -0.055 4.055 16 N -0.249 5.249 17 C 0.159 3.841 18 C -0.060 4.060 19 C -0.110 4.110 20 C -0.142 4.142 21 C -0.114 4.114 22 C -0.142 4.142 23 C -0.074 4.074 24 N -0.427 5.427 25 H 0.286 0.714 26 S 0.198 5.802 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.441 -0.687 26.190 27.848 hybrid contribution -0.964 -0.654 -0.383 1.227 sum -10.405 -1.341 25.808 27.858 Atomic orbital electron populations 1.21745 0.95575 1.00482 1.00590 1.20681 0.95187 0.96194 0.93057 1.21642 0.99895 0.95602 1.00568 1.19154 0.96253 0.95078 0.89883 1.21202 1.30829 1.11917 0.90453 0.92231 1.25009 0.95415 0.95112 0.99039 1.69963 1.37293 1.23134 1.23306 0.86645 0.79255 0.79406 0.83012 1.20752 1.21388 1.19938 1.22583 1.00466 0.94968 0.88670 1.72037 1.12304 1.29730 1.04263 1.26151 0.97841 0.87145 0.94322 1.67844 1.19282 1.29794 1.07937 1.21267 0.89386 0.80436 0.93022 1.18035 1.00914 0.95571 0.91431 1.21123 0.96220 0.98745 0.94934 1.21047 1.00439 0.96635 0.96080 1.21415 0.96972 0.93489 0.99543 1.21242 0.97779 1.00365 0.94831 1.21472 0.96418 0.94428 0.95128 1.47234 1.55268 1.14337 1.25874 0.71383 1.86273 1.56676 1.23902 1.13379 0.94896 0.91587 0.94059 0.93869 0.92205 0.93845 0.96425 0.96680 0.93150 0.89174 0.94033 0.85913 0.85194 0.85410 0.84957 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.06 37.16 0.30 -2.36 16 2 C -0.05 -1.09 0.60 -154.51 -0.09 -1.19 16 3 C -0.12 -2.52 8.06 37.16 0.30 -2.22 16 4 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -14.13 7.65 -34.44 -0.26 -14.39 16 6 H 0.06 1.63 5.68 -52.49 -0.30 1.33 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 1.25 5.27 -4.04 -0.02 1.23 16 14 N -0.46 -8.75 9.16 -61.13 -0.56 -9.31 16 15 C 0.34 5.76 8.59 -89.89 -0.77 4.99 16 16 N -0.52 -7.98 9.80 -11.69 -0.11 -8.09 16 17 C 0.44 5.25 7.46 -157.47 -1.17 4.07 16 18 C -0.05 -0.50 5.87 -104.97 -0.62 -1.12 16 19 C -0.09 -0.58 9.60 -39.19 -0.38 -0.95 16 20 C -0.12 -0.65 10.03 -39.64 -0.40 -1.05 16 21 C -0.10 -0.50 10.04 -39.50 -0.40 -0.90 16 22 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 23 C -0.05 -0.48 9.59 -39.19 -0.38 -0.85 16 24 N -0.70 -7.20 6.62 31.55 0.21 -7.00 16 25 H 0.44 2.88 7.52 -40.82 -0.31 2.57 16 26 S 0.08 1.08 22.40 -107.50 -2.41 -1.33 16 27 H 0.03 0.66 7.60 -51.93 -0.39 0.26 16 28 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.89 8.14 -51.92 -0.42 0.46 16 31 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 32 H 0.04 0.87 7.60 -51.93 -0.39 0.47 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 37 H 0.04 0.80 6.44 -51.93 -0.33 0.46 16 38 H 0.12 0.50 6.69 -52.49 -0.35 0.15 16 39 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 40 H 0.13 0.38 8.06 -52.48 -0.42 -0.05 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.15 1.41 7.60 -52.49 -0.40 1.01 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -33.15 358.04 -11.94 -45.09 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.68 Total: -1.65 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -4.50 Total: -13.70 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.27 Total: -50.72 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.41 Total: -1.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.15 -11.94 -45.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340894481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.908 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds