Wall clock time and date at job start Tue Mar 31 2020 11:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46896 * 2 1 4 4 C 1.52997 * 109.47068 * 239.99754 * 2 1 3 5 5 C 1.50701 * 109.46962 * 60.00332 * 4 2 1 6 6 H 1.07998 * 120.00299 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99873 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00383 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00040 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47072 * 89.99570 * 9 7 5 11 11 H 1.48491 * 109.47516 * 209.99769 * 9 7 5 12 12 H 1.48503 * 109.47091 * 330.00062 * 9 7 5 13 13 C 1.53004 * 109.46945 * 119.99757 * 2 1 3 14 14 N 1.46501 * 109.47218 * 299.99904 * 13 2 1 15 15 C 1.31831 * 119.99613 * 120.00094 * 14 13 2 16 16 N 1.34345 * 127.70962 * 179.97438 * 15 14 13 17 17 C 1.29414 * 116.98547 * 179.97438 * 16 15 14 18 18 C 1.47909 * 120.78815 * 179.72917 * 17 16 15 19 19 C 1.39546 * 120.13701 * 179.74741 * 18 17 16 20 20 C 1.37970 * 119.84804 * 179.78607 * 19 18 17 21 21 C 1.38350 * 120.14363 * 0.46673 * 20 19 18 22 22 C 1.38342 * 120.28852 * 359.78870 * 21 20 19 23 23 C 1.37975 * 120.14297 * 359.97270 * 22 21 20 24 24 N 1.35213 * 118.42546 * 359.97438 * 17 16 15 25 25 H 0.96997 * 127.12794 * 180.02562 * 24 17 16 26 26 S 1.70069 * 105.74229 * 0.02562 * 24 17 16 27 27 H 1.09001 * 109.46742 * 300.00552 * 1 2 3 28 28 H 1.09001 * 109.46604 * 59.99835 * 1 2 3 29 29 H 1.08994 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46986 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47629 * 299.99538 * 3 2 1 32 32 H 1.09001 * 109.47876 * 60.00142 * 3 2 1 33 33 H 1.08996 * 109.46919 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47079 * 300.00416 * 4 2 1 35 35 H 0.97000 * 120.00589 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47061 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46895 * 59.99772 * 13 2 1 38 38 H 1.08001 * 120.07488 * 359.97438 * 19 18 17 39 39 H 1.08002 * 119.92235 * 180.24989 * 20 19 18 40 40 H 1.08004 * 119.85146 * 179.76245 * 21 20 19 41 41 H 1.08002 * 119.93131 * 180.02562 * 22 21 20 42 42 H 1.07993 * 120.07350 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6264 -1.5515 -3.8526 9 14 1.2472 0.3979 -5.2572 10 1 2.2252 1.4395 -5.6619 11 1 1.0819 -0.5814 -6.3610 12 1 -0.0608 1.0355 -4.9610 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 0.7938 -0.6713 3.3132 16 7 0.2654 -0.1940 4.4525 17 6 -0.4534 -1.0105 5.1536 18 6 -1.0704 -0.5752 6.4254 19 6 -1.8473 -1.4653 7.1680 20 6 -2.4164 -1.0542 8.3557 21 6 -2.2262 0.2400 8.8060 22 6 -1.4615 1.1289 8.0718 23 6 -0.8827 0.7290 6.8848 24 7 -0.6228 -2.2724 4.6985 25 1 -1.1324 -2.9828 5.1186 26 16 0.2428 -2.3559 3.2369 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1300 -0.7217 -1.2489 34 1 1.6766 -1.7489 -1.2492 35 1 2.8602 -1.8834 -4.7336 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7489 1.2493 38 1 -2.0002 -2.4746 6.8153 39 1 -3.0146 -1.7434 8.9334 40 1 -2.6771 0.5579 9.7345 41 1 -1.3164 2.1378 8.4289 42 1 -0.2857 1.4236 6.3128 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340894481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:58 Heat of formation + Delta-G solvation = 59.989985 kcal Electronic energy + Delta-G solvation = -23007.289564 eV Core-core repulsion = 19692.183733 eV Total energy + Delta-G solvation = -3315.105832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49074 -39.55013 -39.01742 -36.05194 -34.48384 -33.20999 -32.23575 -31.76046 -29.10906 -28.07515 -27.79619 -25.88827 -24.66560 -23.52203 -22.38957 -21.89625 -20.19800 -19.51745 -18.73430 -18.34597 -17.39418 -16.83138 -16.52260 -16.51150 -16.21931 -15.63902 -15.50068 -15.25252 -14.71086 -14.48342 -14.35519 -13.98776 -13.93302 -13.68998 -13.16030 -13.05499 -12.82384 -12.73436 -12.64723 -12.35122 -12.30410 -12.25422 -12.07807 -12.00870 -11.75729 -11.46569 -11.19125 -11.03007 -10.86065 -10.51253 -10.03609 -9.93902 -9.70215 -8.63005 -8.14165 -6.21632 -0.66370 -0.41720 0.37655 0.43395 0.54971 1.40958 1.41749 1.52399 1.86528 2.27474 2.44313 2.86037 3.13901 3.19142 3.38936 3.88622 3.94879 4.01483 4.09342 4.23165 4.27897 4.39184 4.49421 4.51071 4.64701 4.75235 4.80885 4.84500 4.96894 5.07328 5.10430 5.11187 5.38410 5.40861 5.44207 5.44909 5.47910 5.54529 5.57711 5.73535 5.77331 5.88228 5.94746 6.16664 6.32477 6.79819 6.91317 7.45119 8.97868 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.002494 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.841768 B =11223.168127 C =11531.451559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.109 4.109 4 C 0.043 3.957 5 C -0.516 4.516 6 H 0.064 0.936 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.077 3.923 14 N -0.502 5.502 15 C 0.341 3.659 16 N -0.556 5.556 17 C 0.454 3.546 18 C -0.082 4.082 19 C -0.084 4.084 20 C -0.123 4.123 21 C -0.085 4.085 22 C -0.130 4.130 23 C -0.071 4.071 24 N -0.670 5.670 25 H 0.461 0.539 26 S 0.074 5.926 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.053 0.947 33 H -0.008 1.008 34 H -0.010 1.010 35 H 0.261 0.739 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.147 0.853 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.149 0.851 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 -1.275 29.975 32.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.049 4.049 3 C -0.167 4.167 4 C 0.005 3.995 5 C -0.554 4.554 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.189 1.189 13 C -0.054 4.054 14 N -0.229 5.229 15 C -0.050 4.050 16 N -0.289 5.289 17 C 0.175 3.825 18 C -0.087 4.087 19 C -0.104 4.104 20 C -0.140 4.140 21 C -0.104 4.104 22 C -0.148 4.148 23 C -0.092 4.092 24 N -0.404 5.404 25 H 0.310 0.690 26 S 0.197 5.803 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.010 0.990 34 H 0.008 0.992 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.165 0.835 39 H 0.179 0.821 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.048 -0.848 28.896 31.319 hybrid contribution -0.325 -0.715 -0.884 1.182 sum -12.373 -1.563 28.013 30.663 Atomic orbital electron populations 1.21584 0.94918 1.00222 1.00310 1.20521 0.95630 0.96287 0.92420 1.21522 0.99650 0.95098 1.00407 1.18988 0.94512 0.94113 0.91853 1.21535 1.30540 1.11976 0.91312 0.91805 1.25897 0.95645 0.95882 1.02461 1.70098 1.38627 1.24716 1.24135 0.85554 0.79035 0.78255 0.78865 1.20040 1.20998 1.18896 1.22231 1.00039 0.94513 0.88610 1.72016 1.15608 1.30333 1.04983 1.26421 0.96305 0.88067 0.94161 1.67863 1.21663 1.31166 1.08248 1.21745 0.87536 0.80076 0.93136 1.18117 1.03082 0.96571 0.90973 1.21433 0.94859 0.99260 0.94895 1.21474 0.99854 0.97161 0.95547 1.21849 0.95332 0.93200 0.99998 1.21472 0.97644 1.01619 0.94028 1.21464 0.97175 0.94294 0.96224 1.47213 1.54334 1.14586 1.24243 0.68975 1.86260 1.56703 1.22267 1.15095 0.93936 0.92793 0.94292 0.94136 0.93306 0.92767 0.98956 0.99178 0.93039 0.89921 0.94333 0.83526 0.82077 0.82449 0.83336 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.84 8.06 71.98 0.58 -4.26 16 2 C -0.05 -2.15 0.60 -52.18 -0.03 -2.18 16 3 C -0.11 -4.73 8.06 71.98 0.58 -4.15 16 4 C 0.04 2.33 4.04 29.85 0.12 2.45 16 5 C -0.52 -29.46 7.65 25.60 0.20 -29.27 16 6 H 0.06 3.53 5.68 -2.91 -0.02 3.52 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 8 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 9 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.08 3.17 5.27 86.38 0.46 3.62 16 14 N -0.50 -19.72 9.16 -347.32 -3.18 -22.91 16 15 C 0.34 11.85 8.59 180.09 1.55 13.40 16 16 N -0.56 -17.27 9.80 -190.89 -1.87 -19.14 16 17 C 0.45 10.39 7.46 137.53 1.03 11.42 16 18 C -0.08 -1.38 5.87 -20.09 -0.12 -1.50 16 19 C -0.08 -0.79 9.60 22.52 0.22 -0.58 16 20 C -0.12 -0.74 10.03 22.23 0.22 -0.52 16 21 C -0.09 -0.55 10.04 22.32 0.22 -0.33 16 22 C -0.13 -1.37 10.03 22.23 0.22 -1.15 16 23 C -0.07 -1.19 9.59 22.52 0.22 -0.98 16 24 N -0.67 -12.70 6.62 -54.11 -0.36 -13.06 16 25 H 0.46 4.67 7.52 -92.71 -0.70 3.97 16 26 S 0.07 2.07 22.40 -56.49 -1.27 0.80 16 27 H 0.04 1.72 7.60 -2.39 -0.02 1.70 16 28 H 0.05 2.40 6.62 -2.39 -0.02 2.38 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.05 2.17 6.62 -2.39 -0.02 2.15 16 32 H 0.05 2.21 7.60 -2.39 -0.02 2.19 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 37 H 0.04 1.55 6.44 -2.39 -0.02 1.53 16 38 H 0.15 0.56 6.69 -2.91 -0.02 0.54 16 39 H 0.16 0.02 8.06 -2.91 -0.02 -0.01 16 40 H 0.16 0.12 8.06 -2.91 -0.02 0.10 16 41 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 42 H 0.12 2.55 7.60 -2.91 -0.02 2.53 16 Total: -1.00 -74.12 358.04 1.90 -72.22 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.34 Total: 5.79 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 5.92 Total: -13.66 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -5.13 Total: -112.58 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.27 Total: 0.80 kcal Total: -74.12 1.90 -72.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340894481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.212 kcal (2) G-P(sol) polarization free energy of solvation -74.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds