Wall clock time and date at job start Tue Mar 31 2020 11:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47567 * 2 1 4 4 C 1.33635 * 126.04303 * 85.46137 * 3 2 1 5 5 N 1.31782 * 114.50267 * 179.97438 * 4 3 2 6 6 C 1.29021 * 117.12759 * 0.02562 * 5 4 3 7 7 C 1.50693 * 124.91954 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.47577 * 95.28638 * 7 6 5 9 9 C 1.46892 * 111.00322 * 160.78449 * 8 7 6 10 10 C 1.50700 * 109.47411 * 288.52630 * 9 8 7 11 11 H 1.07996 * 119.99685 * 3.26174 * 10 9 8 12 12 C 1.37876 * 120.00096 * 183.25711 * 10 9 8 13 13 N 1.31519 * 120.00019 * 5.27057 * 12 10 9 14 14 Si 1.86801 * 119.99812 * 185.26764 * 12 10 9 15 15 H 1.48496 * 109.47039 * 65.00351 * 14 12 10 16 16 H 1.48508 * 109.46972 * 184.99930 * 14 12 10 17 17 H 1.48494 * 109.47084 * 304.99920 * 14 12 10 18 18 C 1.46905 * 110.99709 * 284.74224 * 8 7 6 19 19 C 1.50701 * 109.47029 * 169.99665 * 18 8 7 20 20 C 1.38223 * 119.61596 * 94.97552 * 19 18 8 21 21 C 1.38628 * 119.15976 * 179.78951 * 20 19 18 22 22 C 1.38672 * 118.41929 * 0.47107 * 21 20 19 23 23 C 1.38182 * 119.16202 * 359.51312 * 22 21 20 24 24 N 1.31855 * 119.61641 * 274.99565 * 19 18 8 25 25 S 1.70978 * 110.16349 * 0.22909 * 6 5 4 26 26 H 1.09007 * 109.46543 * 300.00711 * 1 2 3 27 27 H 1.09000 * 109.46917 * 59.99819 * 1 2 3 28 28 H 1.08996 * 109.47388 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46830 * 239.99548 * 2 1 3 30 30 H 1.09008 * 109.46761 * 119.99865 * 2 1 3 31 31 H 1.07999 * 122.74852 * 0.02916 * 4 3 2 32 32 H 1.09005 * 109.47113 * 335.27932 * 7 6 5 33 33 H 1.09010 * 109.47138 * 215.28731 * 7 6 5 34 34 H 1.09005 * 109.47486 * 48.53001 * 9 8 7 35 35 H 1.09008 * 109.47076 * 168.52903 * 9 8 7 36 36 H 0.96998 * 119.99795 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47264 * 49.99731 * 18 8 7 38 38 H 1.08999 * 109.46854 * 289.99531 * 18 8 7 39 39 H 1.07998 * 120.42593 * 0.02562 * 20 19 18 40 40 H 1.08001 * 120.79017 * 180.23748 * 21 20 19 41 41 H 1.08003 * 120.42269 * 179.77893 * 22 21 20 42 42 H 1.08003 * 119.61779 * 180.25105 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2140 2.1905 1.0772 5 7 2.6646 3.4007 0.8144 6 6 2.8729 3.6948 -0.4245 7 6 3.3842 5.0222 -0.9218 8 7 4.8413 4.9523 -1.0944 9 6 5.3183 6.0213 -1.9818 10 6 4.8931 5.7265 -3.3972 11 1 4.2808 4.8623 -3.6081 12 6 5.2858 6.5601 -4.4228 13 7 6.1153 7.5521 -4.1829 14 14 4.6398 6.2803 -6.1530 15 1 3.1722 6.5055 -6.1758 16 1 5.3004 7.2271 -7.0872 17 1 4.9333 4.8862 -6.5716 18 6 5.5280 4.9997 0.2034 19 6 6.9883 4.6810 0.0110 20 6 7.8981 5.7107 -0.1391 21 6 9.2397 5.4069 -0.3111 22 6 9.6164 4.0726 -0.3358 23 6 8.6502 3.0972 -0.1789 24 7 7.3832 3.4232 -0.0127 25 16 2.4780 2.3626 -1.4209 26 1 -0.3633 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.0090 1.8486 2.0809 32 1 3.1409 5.7997 -0.1975 33 1 2.9159 5.2569 -1.8778 34 1 4.8923 6.9734 -1.6653 35 1 6.4059 6.0758 -1.9330 36 1 6.3918 8.1383 -4.9045 37 1 5.0822 4.2681 0.8773 38 1 5.4271 5.9970 0.6316 39 1 7.5687 6.7390 -0.1187 40 1 9.9736 6.1908 -0.4270 41 1 10.6524 3.7992 -0.4715 42 1 8.9359 2.0558 -0.1928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346140739.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:49 Heat of formation + Delta-G solvation = 79.382367 kcal Electronic energy + Delta-G solvation = -23710.987148 eV Core-core repulsion = 20396.722233 eV Total energy + Delta-G solvation = -3314.264915 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.82532 -39.35152 -36.72049 -34.24191 -32.70004 -32.03984 -31.48501 -29.48676 -27.48136 -26.97912 -24.78514 -23.50608 -23.09160 -22.45023 -21.89477 -20.22727 -18.84607 -17.69180 -16.53443 -16.37243 -15.79157 -15.36218 -15.25938 -14.74809 -14.59309 -14.36395 -14.03508 -13.91841 -13.55249 -13.27779 -12.95800 -12.84379 -12.49137 -12.26976 -12.14972 -11.74455 -11.69245 -11.52846 -11.35015 -11.07468 -10.99769 -10.72537 -10.67508 -10.61636 -9.97437 -9.48625 -9.31173 -9.21285 -8.95469 -8.84160 -8.58445 -8.42718 -8.37776 -7.39912 -6.07143 -4.07462 1.06383 1.53491 1.73321 1.74008 2.21923 3.16368 3.31164 3.35539 3.38781 4.16284 4.40989 4.52788 4.73687 4.85656 4.97647 5.06957 5.18544 5.20752 5.27010 5.31105 5.44541 5.47311 5.55933 5.58713 5.66419 5.73977 5.82663 5.91484 5.99058 6.04552 6.09602 6.16116 6.23549 6.28365 6.52989 6.56560 6.58618 7.07982 7.15083 7.19652 7.73661 7.96541 8.07344 8.13275 8.43539 8.50308 8.97961 9.56134 11.03469 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.008996 B = 0.005163 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.915008 B = 5422.310044 C = 7616.993740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.246 4.246 4 C 0.036 3.964 5 N -0.484 5.484 6 C 0.077 3.923 7 C 0.132 3.868 8 N -0.520 5.520 9 C 0.187 3.813 10 C -0.509 4.509 11 H 0.062 0.938 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.100 3.900 19 C 0.155 3.845 20 C -0.153 4.153 21 C -0.077 4.077 22 C -0.184 4.184 23 C 0.093 3.907 24 N -0.468 5.468 25 S 0.151 5.849 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.164 0.836 32 H 0.056 0.944 33 H 0.108 0.892 34 H -0.008 1.008 35 H 0.046 0.954 36 H 0.262 0.738 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -9.940 9.414 13.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.368 4.368 4 C -0.116 4.116 5 N -0.198 5.198 6 C -0.200 4.200 7 C 0.001 3.999 8 N -0.245 5.245 9 C 0.063 3.937 10 C -0.547 4.547 11 H 0.080 0.920 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.028 4.028 19 C 0.017 3.983 20 C -0.173 4.173 21 C -0.103 4.103 22 C -0.204 4.204 23 C -0.065 4.065 24 N -0.177 5.177 25 S 0.407 5.593 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.182 0.818 32 H 0.074 0.926 33 H 0.126 0.874 34 H 0.010 0.990 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.166 -10.615 8.504 13.964 hybrid contribution 0.250 1.110 0.051 1.139 sum -2.916 -9.505 8.555 13.116 Atomic orbital electron populations 1.21794 0.94627 1.01636 1.02394 1.19890 0.95741 0.89434 1.03013 1.25959 1.11959 1.02499 0.96356 1.21507 1.01660 0.88856 0.99550 1.66324 1.15983 1.18645 1.18895 1.27153 1.00622 1.01410 0.90863 1.20601 0.90309 0.87719 1.01277 1.61995 1.01260 1.51201 1.10087 1.19932 0.97005 0.86018 0.90792 1.21067 1.32217 1.10281 0.91167 0.91969 1.24932 0.94935 0.95328 0.99002 1.69941 1.32792 1.17861 1.32883 0.86620 0.79138 0.78087 0.84012 1.20226 1.21337 1.20068 1.20961 0.88924 0.99840 0.93086 1.21059 0.95920 0.88164 0.93183 1.22017 0.93766 1.00907 1.00617 1.21482 0.96105 0.96567 0.96125 1.22014 1.00796 0.94058 1.03546 1.22634 0.88370 0.99527 0.95945 1.67455 1.17768 1.20816 1.11687 1.84109 1.57948 1.06473 1.10790 0.92450 0.92506 0.92266 0.90905 0.90262 0.81850 0.92560 0.87406 0.99043 0.93587 0.92865 0.89565 0.94037 0.84951 0.85290 0.85499 0.83469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.90 37.16 0.37 -0.93 16 2 C -0.04 -0.42 6.47 -27.89 -0.18 -0.60 16 3 C -0.25 -3.39 5.85 -35.92 -0.21 -3.60 16 4 C 0.04 0.53 11.25 -19.19 -0.22 0.32 16 5 N -0.48 -8.41 10.02 -11.87 -0.12 -8.53 16 6 C 0.08 1.39 6.27 -13.46 -0.08 1.31 16 7 C 0.13 2.56 5.40 -4.98 -0.03 2.53 16 8 N -0.52 -11.18 4.37 -238.96 -1.04 -12.22 16 9 C 0.19 4.65 4.58 -4.98 -0.02 4.63 16 10 C -0.51 -13.80 8.38 -34.44 -0.29 -14.09 16 11 H 0.06 1.68 7.56 -52.49 -0.40 1.28 16 12 C 0.06 1.65 5.45 -17.82 -0.10 1.55 16 13 N -0.90 -25.69 13.30 55.43 0.74 -24.96 16 14 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.10 1.96 5.11 -4.97 -0.03 1.93 16 19 C 0.16 3.02 5.69 -82.59 -0.47 2.55 16 20 C -0.15 -2.74 8.03 -39.44 -0.32 -3.05 16 21 C -0.08 -1.19 10.18 -39.28 -0.40 -1.59 16 22 C -0.18 -2.67 10.11 -39.44 -0.40 -3.07 16 23 C 0.09 1.49 11.18 -17.55 -0.20 1.29 16 24 N -0.47 -9.07 10.27 -9.47 -0.10 -9.17 16 25 S 0.15 2.44 23.18 -107.50 -2.49 -0.05 16 26 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 31 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 32 H 0.06 1.04 8.01 -51.93 -0.42 0.62 16 33 H 0.11 2.16 6.95 -51.92 -0.36 1.80 16 34 H -0.01 -0.21 8.06 -51.93 -0.42 -0.63 16 35 H 0.05 1.22 5.57 -51.92 -0.29 0.93 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.09 1.70 7.00 -51.93 -0.36 1.34 16 38 H 0.04 0.76 8.02 -51.93 -0.42 0.34 16 39 H 0.13 2.29 8.01 -52.49 -0.42 1.87 16 40 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.15 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -31.05 366.27 -11.10 -42.15 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.02 Total: 1.86 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -2.57 Total: -10.82 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.52 Total: -54.88 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.49 Total: -0.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.05 -11.10 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346140739.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.535 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds